mRNA_E-fasciculatus_F_contig16422.4348.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig16422.4348.1 vs. uniprot
Match: D8LJ72_ECTSI (Photosystem II 11 kDa protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ72_ECTSI) HSP 1 Score: 273 bits (698), Expect = 1.110e-91 Identity = 143/145 (98.62%), Postives = 144/145 (99.31%), Query Frame = 1
Query: 1 QGMSRKNAIAAFSAGAAAVLGAAAVPAAVFAAEEAAAPAPAAVSEDGPPSDWGLTKQYYPDASKMVRHMRYCTNMEKGDPYMADIANNCKKEMVEFVSNYRRSSNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQ 435
+ MSRKNAIAAFSAGAAAVLGAAAVPAAVFAAEEAAAPAPAAVSEDGPPSDWGLTKQYYPDASKMVRHMRYCTNMEKGDPYMADIANNCKKEMVEFVSNYRRSSNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQ
Sbjct: 49 EAMSRKNAIAAFSAGAAAVLGAAAVPAAVFAAEEAAAPAPAAVSEDGPPSDWGLTKQYYPDASKMVRHMRYCTNMEKGDPYMADIANNCKKEMVEFVSNYRRSSNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQ 193
BLAST of mRNA_E-fasciculatus_F_contig16422.4348.1 vs. uniprot
Match: A0A836C8X1_9STRA (Photosystem II Pbs27-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8X1_9STRA) HSP 1 Score: 155 bits (392), Expect = 1.840e-45 Identity = 81/127 (63.78%), Postives = 98/127 (77.17%), Query Frame = 1
Query: 91 AAEEAAAPAPA-AVSEDGPPS-----------DWGLTKQYYPDASKMVRHMRYCTNMEKGDPYMADIANNCKKEMVEFVSNYRRSSNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQ 435
AA AAA APA A++ DG P+ DWGLTK YY DASK+V HMRY T+MEKG + ++A NC++EM++FVS YRR N++GKLSYSNLYTSI+VLAGHYASYGPKFPVPEKRRKRL++
Sbjct: 45 AAAGAAAVAPALAIAADGTPAVEKVPLGPMPVDWGLTKDYYTDASKVVSHMRYATSMEKGAANIENVAKNCRQEMIDFVSYYRRFPNVSGKLSYSNLYTSINVLAGHYASYGPKFPVPEKRRKRLME 171
BLAST of mRNA_E-fasciculatus_F_contig16422.4348.1 vs. uniprot
Match: A0A836CEQ5_9STRA (Photosystem II Pbs27-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEQ5_9STRA) HSP 1 Score: 152 bits (384), Expect = 4.290e-44 Identity = 78/113 (69.03%), Postives = 92/113 (81.42%), Query Frame = 1
Query: 100 EAAAPAPAAVSEDGP-PSDWGLTKQYYPDASKMVRHMRYCTNMEKGDPYMADIANNCKKEMVEFVSNYRRSSNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQ 435
E AAPA A + GP P+DWGLTK YY DASK+V HMRY T++EKG + A NC++EM++FVS YRR N++GKLSYSNLYTSI+VLAGHYASYGPKFPVPEKRRKRLL+
Sbjct: 74 EDAAPAKAPL---GPMPTDWGLTKDYYTDASKVVSHMRYATSLEKGAAGIEMTAKNCRQEMIDFVSYYRRFPNVSGKLSYSNLYTSINVLAGHYASYGPKFPVPEKRRKRLLE 183
BLAST of mRNA_E-fasciculatus_F_contig16422.4348.1 vs. uniprot
Match: A0A7S3ZPN6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZPN6_9STRA) HSP 1 Score: 145 bits (365), Expect = 5.010e-42 Identity = 72/112 (64.29%), Postives = 85/112 (75.89%), Query Frame = 1
Query: 100 EAAAPAPAAVSEDGPPSDWGLTKQYYPDASKMVRHMRYCTNMEKGDPYMADIANNCKKEMVEFVSNYRRSSNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQ 435
EA APAP P DWG+T YY DA+K+V HMR T++EKG P M IA NCKKEM++FVS YRR +N++GK S+S LYT+I+VLAGHY SYGPKFPVPEKRRKRL Q
Sbjct: 15 EAEAPAPVEF-----PKDWGITSDYYTDAAKVVAHMRLATSLEKGAPNMEMIALNCKKEMIDFVSFYRRFTNVSGKQSFSTLYTAINVLAGHYTSYGPKFPVPEKRRKRLFQ 121
BLAST of mRNA_E-fasciculatus_F_contig16422.4348.1 vs. uniprot
Match: A0A7S2UVY8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVY8_9STRA) HSP 1 Score: 142 bits (357), Expect = 9.750e-40 Identity = 73/116 (62.93%), Postives = 91/116 (78.45%), Query Frame = 1
Query: 94 AEEAAAPAPAAVSED-GP-PSDWGLTKQYYPDASKMVRHMRYCTNMEKGDPYMADIANNCKKEMVEFVSNYRRSSNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQ 435
AEEA APA A D GP P+D+ + +YYPDA +V++MRY T M+KG P M I + +K+MV+FV+ YRR++ +NG+LSYS LYTSI+VLAGHYASYGPKFPVPEKRRKRLLQ
Sbjct: 90 AEEAVAPAAAPAKPDMGPVPTDFKVKGEYYPDAILLVKNMRYATLMDKGTPNMEQIGKSVRKQMVDFVAQYRRNNKVNGRLSYSTLYTSINVLAGHYASYGPKFPVPEKRRKRLLQ 205
BLAST of mRNA_E-fasciculatus_F_contig16422.4348.1 vs. uniprot
Match: A0A7R9U8B8_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8B8_9STRA) HSP 1 Score: 139 bits (351), Expect = 5.930e-39 Identity = 67/107 (62.62%), Postives = 80/107 (74.77%), Query Frame = 1
Query: 115 APAAVSEDGPPSDWGLTKQYYPDASKMVRHMRYCTNMEKGDPYMADIANNCKKEMVEFVSNYRRSSNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQ 435
APA+ PP+DWGL+ QYY DA ++V HMRY T M K P IA NCKKEM++FVS YRR N+ GK S+S LYT+I+VLAGHY +YG KFPVPEKR+KRLLQ
Sbjct: 89 APASTELGPPPTDWGLSNQYYDDAVRVVNHMRYATIMPKSTPNYEAIATNCKKEMIDFVSFYRRFPNVAGKPSFSTLYTAINVLAGHYTNYGVKFPVPEKRKKRLLQ 195
BLAST of mRNA_E-fasciculatus_F_contig16422.4348.1 vs. uniprot
Match: A0A7S1XRA0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XRA0_9STRA) HSP 1 Score: 137 bits (344), Expect = 6.040e-38 Identity = 65/102 (63.73%), Postives = 80/102 (78.43%), Query Frame = 1
Query: 133 EDGP-PSDWGLTKQYYPDASKMVRHMRYCTNMEKGDPYMADIANNCKKEMVEFVSNYRRSSNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQ 435
E GP P+DWGLT +YY DA ++V HMRY T+M KG P +IA +CKKEM++FVS YRR N+ GK S+S LYT+I+VLAGHY +YG KFPVPEKR+KRL Q
Sbjct: 90 ELGPAPTDWGLTNEYYKDAPRVVSHMRYATSMPKGTPNYENIAKSCKKEMIDFVSFYRRFPNVAGKPSFSTLYTAINVLAGHYTNYGLKFPVPEKRKKRLFQ 191
BLAST of mRNA_E-fasciculatus_F_contig16422.4348.1 vs. uniprot
Match: A0A7S0SU27_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SU27_9STRA) HSP 1 Score: 130 bits (326), Expect = 2.970e-35 Identity = 63/103 (61.17%), Postives = 76/103 (73.79%), Query Frame = 1
Query: 127 VSEDGPPSDWGLTKQYYPDASKMVRHMRYCTNMEKGDPYMADIANNCKKEMVEFVSNYRRSSNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQ 435
VS PP+D+GL YY DA K+V MRY +EKGDP +A A K +M +FVS YRR++ ++GK S+S LYTSI+VLAGHY SYG KFPVPEKRRKRLLQ
Sbjct: 87 VSLGPPPNDFGLKLDYYVDAQKLVNQMRYAVQLEKGDPIIASFAQKVKDDMTQFVSYYRRNNAVSGKQSFSLLYTSINVLAGHYTSYGTKFPVPEKRRKRLLQ 189
BLAST of mRNA_E-fasciculatus_F_contig16422.4348.1 vs. uniprot
Match: W7TYA6_9STRA (Photosystem ii 11 kd protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TYA6_9STRA) HSP 1 Score: 128 bits (322), Expect = 8.550e-35 Identity = 64/116 (55.17%), Postives = 83/116 (71.55%), Query Frame = 1
Query: 88 FAAEEAAAPAPAAVSEDGPPSDWGLTKQYYPDASKMVRHMRYCTNMEKGDPYMADIANNCKKEMVEFVSNYRRSSNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQ 435
AAEE P A V PP ++ L+K+YY DA+++V HM+Y T M + P +IA + K EM +FVS YRR +N+ GK S+S LYT+I+V+AGHYASYGPKFP+PEKRRKRL Q
Sbjct: 62 LAAEEGGVPTAAPVDLGVPPVNFDLSKEYYKDAAQVVNHMKYATFMNRDTPNYENIAKSVKNEMTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFPIPEKRRKRLQQ 177
BLAST of mRNA_E-fasciculatus_F_contig16422.4348.1 vs. uniprot
Match: A0A7S2RL20_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RL20_9STRA) HSP 1 Score: 128 bits (322), Expect = 1.600e-34 Identity = 63/98 (64.29%), Postives = 74/98 (75.51%), Query Frame = 1
Query: 145 PSDWGLT-KQYYPDASKMVRHMRYCTNMEKGDPYMADIANNCKKEMVEFVSNYRRSSNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQ 435
P +WG+T K YY DA ++V HM+Y T MEKG M I N KKEMV+FVS YRR +N+ GK S+S LYT+I+VLAGHY SYG KFPVPEKRRKRL Q
Sbjct: 103 PKEWGITGKDYYYDAQRVVDHMKYATAMEKGTSNMDSINKNMKKEMVDFVSFYRRFNNVAGKQSFSTLYTAINVLAGHYTSYGTKFPVPEKRRKRLFQ 200 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16422.4348.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig16422.4348.1 >prot_E-fasciculatus_F_contig16422.4348.1 ID=prot_E-fasciculatus_F_contig16422.4348.1|Name=mRNA_E-fasciculatus_F_contig16422.4348.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=143bp MSRKNAIAAFSAGAAAVLGAAAVPAAVFAAEEAAAPAPAAVSEDGPPSDWback to top mRNA from alignment at E-fasciculatus_F_contig16422:64..2586- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig16422.4348.1 ID=mRNA_E-fasciculatus_F_contig16422.4348.1|Name=mRNA_E-fasciculatus_F_contig16422.4348.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2523bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16422:64..2586- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16422:64..2586- >mRNA_E-fasciculatus_F_contig16422.4348.1 ID=mRNA_E-fasciculatus_F_contig16422.4348.1|Name=mRNA_E-fasciculatus_F_contig16422.4348.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=858bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16422:64..2586- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |