mRNA_E-fasciculatus_F_contig16420.4347.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16420.4347.1
Unique NamemRNA_E-fasciculatus_F_contig16420.4347.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig16420.4347.1 vs. uniprot
Match: D7G3P6_ECTSI (Origin recognition complex subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3P6_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 2.320e-46
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 1
Query:    1 MVEQKRTVARRLFIFLHSIDGEKLRNEDSQEALAELSASRYVHLVASMDHVNAPLMWDVRLSEKFNWLFHKTHTYKPYVEEV 246
            MVEQKRTVARRLFIFLHSIDGEKLRNEDSQEALAELSASRYVHLVASMDHVNAPLMWDV LSEKFNWLFHKTHTYKPYVEEV
Sbjct:  361 MVEQKRTVARRLFIFLHSIDGEKLRNEDSQEALAELSASRYVHLVASMDHVNAPLMWDVGLSEKFNWLFHKTHTYKPYVEEV 442          
BLAST of mRNA_E-fasciculatus_F_contig16420.4347.1 vs. uniprot
Match: A0A6H5LEG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEG7_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 8.910e-32
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 1
Query:   70 LRNEDSQEALAELSASRYVHLVASMDHVNAPLMWDVRLSEKFNWLFHKTHTYKPYVEEVS 249
            LRNEDSQEALAELSASRYVHL+ASMDHVNAPLMWDVRLSEKFNWLFHKTHTYKPYVEEVS
Sbjct: 1025 LRNEDSQEALAELSASRYVHLIASMDHVNAPLMWDVRLSEKFNWLFHKTHTYKPYVEEVS 1084          
BLAST of mRNA_E-fasciculatus_F_contig16420.4347.1 vs. uniprot
Match: A0A8C4S929_ERPCA (Origin recognition complex subunit 2 n=1 Tax=Erpetoichthys calabaricus TaxID=27687 RepID=A0A8C4S929_ERPCA)

HSP 1 Score: 89.0 bits (219), Expect = 3.650e-20
Identity = 39/79 (49.37%), Postives = 58/79 (73.42%), Query Frame = 1
Query:   13 KRTVARRLFIFLHSIDGEKLRNEDSQEALAELSASRYVHLVASMDHVNAPLMWDVRLSEKFNWLFHKTHTYKPYVEEVS 249
            K+  A  +F+ +H+IDG  LR E +Q+ LA+L+++  +H++AS+DH+NAPL WD      FNWL+++T TYKPYVEE S
Sbjct:   52 KKDPALHIFLIIHNIDGPMLRGEKTQQILAQLASAPNLHVIASIDHINAPLAWDQSKMSLFNWLWYETTTYKPYVEETS 130          
BLAST of mRNA_E-fasciculatus_F_contig16420.4347.1 vs. uniprot
Match: A0A2K6TF33_SAIBB (Origin recognition complex subunit 2 n=2 Tax=Simiiformes TaxID=314293 RepID=A0A2K6TF33_SAIBB)

HSP 1 Score: 84.0 bits (206), Expect = 1.150e-18
Identity = 35/72 (48.61%), Postives = 52/72 (72.22%), Query Frame = 1
Query:   34 LFIFLHSIDGEKLRNEDSQEALAELSASRYVHLVASMDHVNAPLMWDVRLSEKFNWLFHKTHTYKPYVEEVS 249
            LF+ +H++D + LR E SQ+ + +LS+   ++L+AS+DH+NAPLMWD      FNWL+++T TY PY EE S
Sbjct:   33 LFLLIHNLDSQMLRGEKSQQIIGQLSSLHNIYLIASIDHLNAPLMWDHAKQSLFNWLWYETTTYSPYTEETS 104          
BLAST of mRNA_E-fasciculatus_F_contig16420.4347.1 vs. uniprot
Match: A0A7S0GU76_MICPS (Origin recognition complex subunit 2 n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0GU76_MICPS)

HSP 1 Score: 85.1 bits (209), Expect = 2.660e-18
Identity = 38/75 (50.67%), Postives = 55/75 (73.33%), Query Frame = 1
Query:   25 ARRLFIFLHSIDGEKLRNEDSQEALAELSASRYVHLVASMDHVNAPLMWDVRLSEKFNWLFHKTHTYKPYVEEVS 249
            A+RL+I LH+IDG +LR+ ++Q  L EL++   VHL+AS+DHVNAPL+W  R + +FNW++ K  T+ PY  E S
Sbjct:   63 AKRLYIVLHNIDGAQLRSPEAQAVLGELASMPRVHLIASVDHVNAPLLWSKREAARFNWVWRKATTFAPYAVETS 137          
BLAST of mRNA_E-fasciculatus_F_contig16420.4347.1 vs. uniprot
Match: H3B312_LATCH (Origin recognition complex subunit 2 n=2 Tax=Latimeria chalumnae TaxID=7897 RepID=H3B312_LATCH)

HSP 1 Score: 87.4 bits (215), Expect = 2.780e-18
Identity = 39/79 (49.37%), Postives = 58/79 (73.42%), Query Frame = 1
Query:   13 KRTVARRLFIFLHSIDGEKLRNEDSQEALAELSASRYVHLVASMDHVNAPLMWDVRLSEKFNWLFHKTHTYKPYVEEVS 249
            K+  + +L++ +H+IDG+ LR E +Q+ L +L+A   +HL+AS+DH+NAPLMWD      FNWL+++T TYK YVEE S
Sbjct:  372 KKDPSLQLYLIIHNIDGQMLRGERTQQLLGQLAAVPNIHLLASLDHINAPLMWDQSKLSLFNWLWYETTTYKAYVEETS 450          
BLAST of mRNA_E-fasciculatus_F_contig16420.4347.1 vs. uniprot
Match: A0A8J7THG2_ATRSP (Origin recognition complex subunit 2 (Fragment) n=1 Tax=Atractosteus spatula TaxID=7917 RepID=A0A8J7THG2_ATRSP)

HSP 1 Score: 87.4 bits (215), Expect = 2.920e-18
Identity = 41/81 (50.62%), Postives = 57/81 (70.37%), Query Frame = 1
Query:    7 EQKRTVARRLFIFLHSIDGEKLRNEDSQEALAELSASRYVHLVASMDHVNAPLMWDVRLSEKFNWLFHKTHTYKPYVEEVS 249
            E K  V   L++ +H+IDG  LR E +Q+ LA+L+A   +HL+AS+DH+NAPL+WD      FNWL+++T TY PYVEE S
Sbjct:  374 EGKEEVDFHLYLIIHNIDGLMLRGEKTQQTLAQLAAIPNLHLIASIDHINAPLIWDQSKMSLFNWLWYETPTYLPYVEETS 454          
BLAST of mRNA_E-fasciculatus_F_contig16420.4347.1 vs. uniprot
Match: A0A6G1RKU7_9GRUI (Origin recognition complex subunit 2 (Fragment) n=1 Tax=Hypotaenidia okinawae TaxID=2861861 RepID=A0A6G1RKU7_9GRUI)

HSP 1 Score: 84.0 bits (206), Expect = 3.720e-18
Identity = 36/72 (50.00%), Postives = 54/72 (75.00%), Query Frame = 1
Query:   34 LFIFLHSIDGEKLRNEDSQEALAELSASRYVHLVASMDHVNAPLMWDVRLSEKFNWLFHKTHTYKPYVEEVS 249
            L++ +H++D + LR E SQ+ LA+LS+   V+L+AS+DH+NAPLMWD      +NWL+++T T+ PYVEE S
Sbjct:   24 LYVLIHNLDSQMLRGERSQQILAQLSSLPSVYLIASIDHINAPLMWDQAKLSLYNWLWYETTTFSPYVEETS 95          
BLAST of mRNA_E-fasciculatus_F_contig16420.4347.1 vs. uniprot
Match: A0A662YUG6_ACIRT (Origin recognition complex subunit 2 n=7 Tax=Acipenseroidei TaxID=186622 RepID=A0A662YUG6_ACIRT)

HSP 1 Score: 86.7 bits (213), Expect = 4.900e-18
Identity = 36/72 (50.00%), Postives = 55/72 (76.39%), Query Frame = 1
Query:   34 LFIFLHSIDGEKLRNEDSQEALAELSASRYVHLVASMDHVNAPLMWDVRLSEKFNWLFHKTHTYKPYVEEVS 249
            LF+ +H+IDG+ LR + +Q+ L +L+A   +HL+AS+DH+NAPL WD     +FNWL+++T TY+PY+EE S
Sbjct:  311 LFLLIHNIDGQMLRGDKTQQILGQLAAIPNLHLIASIDHINAPLSWDQFKMSQFNWLWYETTTYQPYIEETS 382          
BLAST of mRNA_E-fasciculatus_F_contig16420.4347.1 vs. uniprot
Match: A0A7K4J4Z6_GEOCA (Origin recognition complex subunit 2 (Fragment) n=1 Tax=Geococcyx californianus TaxID=8947 RepID=A0A7K4J4Z6_GEOCA)

HSP 1 Score: 86.7 bits (213), Expect = 5.080e-18
Identity = 37/72 (51.39%), Postives = 55/72 (76.39%), Query Frame = 1
Query:   34 LFIFLHSIDGEKLRNEDSQEALAELSASRYVHLVASMDHVNAPLMWDVRLSEKFNWLFHKTHTYKPYVEEVS 249
            L++ +H++D + LR E SQ+ LA+LS+   ++L+AS+DH+NAPLMWD      FNWL+++T T+KPYVEE S
Sbjct:  341 LYVLIHNLDSQMLRGERSQQILAQLSSLPSIYLIASIDHINAPLMWDQAKLSLFNWLWYETTTFKPYVEETS 412          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16420.4347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3P6_ECTSI2.320e-4698.78Origin recognition complex subunit 2 n=1 Tax=Ectoc... [more]
A0A6H5LEG7_9PHAE8.910e-3298.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8C4S929_ERPCA3.650e-2049.37Origin recognition complex subunit 2 n=1 Tax=Erpet... [more]
A0A2K6TF33_SAIBB1.150e-1848.61Origin recognition complex subunit 2 n=2 Tax=Simii... [more]
A0A7S0GU76_MICPS2.660e-1850.67Origin recognition complex subunit 2 n=1 Tax=Micro... [more]
H3B312_LATCH2.780e-1849.37Origin recognition complex subunit 2 n=2 Tax=Latim... [more]
A0A8J7THG2_ATRSP2.920e-1850.62Origin recognition complex subunit 2 (Fragment) n=... [more]
A0A6G1RKU7_9GRUI3.720e-1850.00Origin recognition complex subunit 2 (Fragment) n=... [more]
A0A662YUG6_ACIRT4.900e-1850.00Origin recognition complex subunit 2 n=7 Tax=Acipe... [more]
A0A7K4J4Z6_GEOCA5.080e-1851.39Origin recognition complex subunit 2 (Fragment) n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16420contigE-fasciculatus_F_contig16420:348..1285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.9
Seed ortholog evalue2e-39
Seed eggNOG ortholog2880.D7G3P6
KEGG koko:K02604,ko:K06199
KEGG TC1.A.43.1,1.A.43.2,1.A.43.3
KEGG Pathwayko04110,ko04111,ko04113,map04110,map04111,map04113
KEGG ModuleM00284
EggNOG free text desc.DNA replication origin binding
EggNOG OGsCOG5575@1,KOG2928@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000,ko03032,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size249
Cds size249
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928113.295411-CDS-E-fasciculatus_F_contig16420:347..4161622928113.295411-CDS-E-fasciculatus_F_contig16420:347..416Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16420 348..416 +
1695995824.0781045-CDS-E-fasciculatus_F_contig16420:347..4161695995824.0781045-CDS-E-fasciculatus_F_contig16420:347..416Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16420 348..416 +
1622928113.3124547-CDS-E-fasciculatus_F_contig16420:1105..12851622928113.3124547-CDS-E-fasciculatus_F_contig16420:1105..1285Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16420 1106..1285 +
1695995824.0900574-CDS-E-fasciculatus_F_contig16420:1105..12851695995824.0900574-CDS-E-fasciculatus_F_contig16420:1105..1285Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16420 1106..1285 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16420.4347.1prot_E-fasciculatus_F_contig16420.4347.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16420 348..1285 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16420.4347.1

>prot_E-fasciculatus_F_contig16420.4347.1 ID=prot_E-fasciculatus_F_contig16420.4347.1|Name=mRNA_E-fasciculatus_F_contig16420.4347.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=83bp
MVEQKRTVARRLFIFLHSIDGEKLRNEDSQEALAELSASRYVHLVASMDH
VNAPLMWDVRLSEKFNWLFHKTHTYKPYVEEVS
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mRNA from alignment at E-fasciculatus_F_contig16420:348..1285+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16420.4347.1 ID=mRNA_E-fasciculatus_F_contig16420.4347.1|Name=mRNA_E-fasciculatus_F_contig16420.4347.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=938bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16420:348..1285+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTAGAGCAGAAGAGGACGGTGGCGCGGCGGCTCTTCATCTTCCTTCA CAGCATCGACGGAGAGAAGGTGTGTGTTCCTTGTGTGTGTGTGTGGGGGG GGGGTATGTAGTGGGAAGGAGGGGAGAGGGAGGGGGTTGCTTTGGTCGAT CCTCAGGGGACCAAGCTTGGTTGGGGGCGATGGTTCCTCGTTTGTTTTTT CACAGCGCGACCGACGAAGGGGAGTTTAATCACTGCTTCCCTCTTGTGGC ACAGGGAGGGTGGCATTACAACATACTCGTGGCAAATCTCCTCGGTGATA TACTATTGTACCGTCGCGCAAGTCCCCCGTTTTGGTGTGTGTTTTCTATT TTTTATTCGCTCTGTTGGTGTGCAGCAGCACCAGATCAGGCAAAAACACC TACGGTTTTCCACGGTGTGACCTGTGTTTTGTCCGAATCTGTAAGAGGCT AGCTTCAGTTATCCGTGGTGGGCACGTATGTACGTATCTTAAATTTCCGA CATGAAGGCCACGCCCGGGTGGTGGGGAAATGGGCAGAGCAAGGTATGGC CACGGAAGGAGAGACTCTTTGTTTTTTCCTGGGTCTGTCCTTGGTACGCA GTGGTCATTGTCGTCGCTGCGATCGCCCCATGCGGTGCCTCCTATTTTTA TATTTCCTGGGTCTCTCCTTGCTGCGTATTGTGCCATTGTGGTAGTTGCT GTCGCCTTATCTCCGTCCCGCGTTTTTTCCCGACCCCGTCCGGCCGCCTC CCCCGCAGCTGAGGAACGAGGACTCGCAGGAGGCCCTGGCCGAGCTGTCG GCCTCCAGGTACGTGCACCTCGTCGCCTCGATGGACCACGTCAACGCCCC CCTGATGTGGGACGTAAGGCTCTCCGAGAAGTTCAACTGGCTCTTCCACA AGACGCACACGTACAAGCCCTACGTCGAGGAGGTGAGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16420:348..1285+

>mRNA_E-fasciculatus_F_contig16420.4347.1 ID=mRNA_E-fasciculatus_F_contig16420.4347.1|Name=mRNA_E-fasciculatus_F_contig16420.4347.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=498bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16420:348..1285+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTAGAGCAGAAGAGGACGGTGGCGCGGCGGCTCTTCATCTTCCTTCA
CAGCATCGACGGAGAGAAGATGGTAGAGCAGAAGAGGACGGTGGCGCGGC
GGCTCTTCATCTTCCTTCACAGCATCGACGGAGAGAAGCTGAGGAACGAG
GACTCGCAGGAGGCCCTGGCCGAGCTGTCGGCCTCCAGGTACGTGCACCT
CGTCGCCTCGATGGACCACGTCAACGCCCCCCTGATGTGGGACGTAAGGC
TCTCCGAGAAGTTCAACTGGCTCTTCCACAAGACGCACACGTACAAGCCC
TACGTCGAGGAGGTGAGCCTGAGGAACGAGGACTCGCAGGAGGCCCTGGC
CGAGCTGTCGGCCTCCAGGTACGTGCACCTCGTCGCCTCGATGGACCACG
TCAACGCCCCCCTGATGTGGGACGTAAGGCTCTCCGAGAAGTTCAACTGG
CTCTTCCACAAGACGCACACGTACAAGCCCTACGTCGAGGAGGTGAGC
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