mRNA_E-fasciculatus_F_contig16420.4347.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig16420.4347.1 vs. uniprot
Match: D7G3P6_ECTSI (Origin recognition complex subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3P6_ECTSI) HSP 1 Score: 164 bits (415), Expect = 2.320e-46 Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 1
Query: 1 MVEQKRTVARRLFIFLHSIDGEKLRNEDSQEALAELSASRYVHLVASMDHVNAPLMWDVRLSEKFNWLFHKTHTYKPYVEEV 246
MVEQKRTVARRLFIFLHSIDGEKLRNEDSQEALAELSASRYVHLVASMDHVNAPLMWDV LSEKFNWLFHKTHTYKPYVEEV
Sbjct: 361 MVEQKRTVARRLFIFLHSIDGEKLRNEDSQEALAELSASRYVHLVASMDHVNAPLMWDVGLSEKFNWLFHKTHTYKPYVEEV 442
BLAST of mRNA_E-fasciculatus_F_contig16420.4347.1 vs. uniprot
Match: A0A6H5LEG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEG7_9PHAE) HSP 1 Score: 125 bits (315), Expect = 8.910e-32 Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 1
Query: 70 LRNEDSQEALAELSASRYVHLVASMDHVNAPLMWDVRLSEKFNWLFHKTHTYKPYVEEVS 249
LRNEDSQEALAELSASRYVHL+ASMDHVNAPLMWDVRLSEKFNWLFHKTHTYKPYVEEVS
Sbjct: 1025 LRNEDSQEALAELSASRYVHLIASMDHVNAPLMWDVRLSEKFNWLFHKTHTYKPYVEEVS 1084
BLAST of mRNA_E-fasciculatus_F_contig16420.4347.1 vs. uniprot
Match: A0A8C4S929_ERPCA (Origin recognition complex subunit 2 n=1 Tax=Erpetoichthys calabaricus TaxID=27687 RepID=A0A8C4S929_ERPCA) HSP 1 Score: 89.0 bits (219), Expect = 3.650e-20 Identity = 39/79 (49.37%), Postives = 58/79 (73.42%), Query Frame = 1
Query: 13 KRTVARRLFIFLHSIDGEKLRNEDSQEALAELSASRYVHLVASMDHVNAPLMWDVRLSEKFNWLFHKTHTYKPYVEEVS 249
K+ A +F+ +H+IDG LR E +Q+ LA+L+++ +H++AS+DH+NAPL WD FNWL+++T TYKPYVEE S
Sbjct: 52 KKDPALHIFLIIHNIDGPMLRGEKTQQILAQLASAPNLHVIASIDHINAPLAWDQSKMSLFNWLWYETTTYKPYVEETS 130
BLAST of mRNA_E-fasciculatus_F_contig16420.4347.1 vs. uniprot
Match: A0A2K6TF33_SAIBB (Origin recognition complex subunit 2 n=2 Tax=Simiiformes TaxID=314293 RepID=A0A2K6TF33_SAIBB) HSP 1 Score: 84.0 bits (206), Expect = 1.150e-18 Identity = 35/72 (48.61%), Postives = 52/72 (72.22%), Query Frame = 1
Query: 34 LFIFLHSIDGEKLRNEDSQEALAELSASRYVHLVASMDHVNAPLMWDVRLSEKFNWLFHKTHTYKPYVEEVS 249
LF+ +H++D + LR E SQ+ + +LS+ ++L+AS+DH+NAPLMWD FNWL+++T TY PY EE S
Sbjct: 33 LFLLIHNLDSQMLRGEKSQQIIGQLSSLHNIYLIASIDHLNAPLMWDHAKQSLFNWLWYETTTYSPYTEETS 104
BLAST of mRNA_E-fasciculatus_F_contig16420.4347.1 vs. uniprot
Match: A0A7S0GU76_MICPS (Origin recognition complex subunit 2 n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0GU76_MICPS) HSP 1 Score: 85.1 bits (209), Expect = 2.660e-18 Identity = 38/75 (50.67%), Postives = 55/75 (73.33%), Query Frame = 1
Query: 25 ARRLFIFLHSIDGEKLRNEDSQEALAELSASRYVHLVASMDHVNAPLMWDVRLSEKFNWLFHKTHTYKPYVEEVS 249
A+RL+I LH+IDG +LR+ ++Q L EL++ VHL+AS+DHVNAPL+W R + +FNW++ K T+ PY E S
Sbjct: 63 AKRLYIVLHNIDGAQLRSPEAQAVLGELASMPRVHLIASVDHVNAPLLWSKREAARFNWVWRKATTFAPYAVETS 137
BLAST of mRNA_E-fasciculatus_F_contig16420.4347.1 vs. uniprot
Match: H3B312_LATCH (Origin recognition complex subunit 2 n=2 Tax=Latimeria chalumnae TaxID=7897 RepID=H3B312_LATCH) HSP 1 Score: 87.4 bits (215), Expect = 2.780e-18 Identity = 39/79 (49.37%), Postives = 58/79 (73.42%), Query Frame = 1
Query: 13 KRTVARRLFIFLHSIDGEKLRNEDSQEALAELSASRYVHLVASMDHVNAPLMWDVRLSEKFNWLFHKTHTYKPYVEEVS 249
K+ + +L++ +H+IDG+ LR E +Q+ L +L+A +HL+AS+DH+NAPLMWD FNWL+++T TYK YVEE S
Sbjct: 372 KKDPSLQLYLIIHNIDGQMLRGERTQQLLGQLAAVPNIHLLASLDHINAPLMWDQSKLSLFNWLWYETTTYKAYVEETS 450
BLAST of mRNA_E-fasciculatus_F_contig16420.4347.1 vs. uniprot
Match: A0A8J7THG2_ATRSP (Origin recognition complex subunit 2 (Fragment) n=1 Tax=Atractosteus spatula TaxID=7917 RepID=A0A8J7THG2_ATRSP) HSP 1 Score: 87.4 bits (215), Expect = 2.920e-18 Identity = 41/81 (50.62%), Postives = 57/81 (70.37%), Query Frame = 1
Query: 7 EQKRTVARRLFIFLHSIDGEKLRNEDSQEALAELSASRYVHLVASMDHVNAPLMWDVRLSEKFNWLFHKTHTYKPYVEEVS 249
E K V L++ +H+IDG LR E +Q+ LA+L+A +HL+AS+DH+NAPL+WD FNWL+++T TY PYVEE S
Sbjct: 374 EGKEEVDFHLYLIIHNIDGLMLRGEKTQQTLAQLAAIPNLHLIASIDHINAPLIWDQSKMSLFNWLWYETPTYLPYVEETS 454
BLAST of mRNA_E-fasciculatus_F_contig16420.4347.1 vs. uniprot
Match: A0A6G1RKU7_9GRUI (Origin recognition complex subunit 2 (Fragment) n=1 Tax=Hypotaenidia okinawae TaxID=2861861 RepID=A0A6G1RKU7_9GRUI) HSP 1 Score: 84.0 bits (206), Expect = 3.720e-18 Identity = 36/72 (50.00%), Postives = 54/72 (75.00%), Query Frame = 1
Query: 34 LFIFLHSIDGEKLRNEDSQEALAELSASRYVHLVASMDHVNAPLMWDVRLSEKFNWLFHKTHTYKPYVEEVS 249
L++ +H++D + LR E SQ+ LA+LS+ V+L+AS+DH+NAPLMWD +NWL+++T T+ PYVEE S
Sbjct: 24 LYVLIHNLDSQMLRGERSQQILAQLSSLPSVYLIASIDHINAPLMWDQAKLSLYNWLWYETTTFSPYVEETS 95
BLAST of mRNA_E-fasciculatus_F_contig16420.4347.1 vs. uniprot
Match: A0A662YUG6_ACIRT (Origin recognition complex subunit 2 n=7 Tax=Acipenseroidei TaxID=186622 RepID=A0A662YUG6_ACIRT) HSP 1 Score: 86.7 bits (213), Expect = 4.900e-18 Identity = 36/72 (50.00%), Postives = 55/72 (76.39%), Query Frame = 1
Query: 34 LFIFLHSIDGEKLRNEDSQEALAELSASRYVHLVASMDHVNAPLMWDVRLSEKFNWLFHKTHTYKPYVEEVS 249
LF+ +H+IDG+ LR + +Q+ L +L+A +HL+AS+DH+NAPL WD +FNWL+++T TY+PY+EE S
Sbjct: 311 LFLLIHNIDGQMLRGDKTQQILGQLAAIPNLHLIASIDHINAPLSWDQFKMSQFNWLWYETTTYQPYIEETS 382
BLAST of mRNA_E-fasciculatus_F_contig16420.4347.1 vs. uniprot
Match: A0A7K4J4Z6_GEOCA (Origin recognition complex subunit 2 (Fragment) n=1 Tax=Geococcyx californianus TaxID=8947 RepID=A0A7K4J4Z6_GEOCA) HSP 1 Score: 86.7 bits (213), Expect = 5.080e-18 Identity = 37/72 (51.39%), Postives = 55/72 (76.39%), Query Frame = 1
Query: 34 LFIFLHSIDGEKLRNEDSQEALAELSASRYVHLVASMDHVNAPLMWDVRLSEKFNWLFHKTHTYKPYVEEVS 249
L++ +H++D + LR E SQ+ LA+LS+ ++L+AS+DH+NAPLMWD FNWL+++T T+KPYVEE S
Sbjct: 341 LYVLIHNLDSQMLRGERSQQILAQLSSLPSIYLIASIDHINAPLMWDQAKLSLFNWLWYETTTFKPYVEETS 412 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16420.4347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig16420.4347.1 >prot_E-fasciculatus_F_contig16420.4347.1 ID=prot_E-fasciculatus_F_contig16420.4347.1|Name=mRNA_E-fasciculatus_F_contig16420.4347.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=83bp MVEQKRTVARRLFIFLHSIDGEKLRNEDSQEALAELSASRYVHLVASMDHback to top mRNA from alignment at E-fasciculatus_F_contig16420:348..1285+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig16420.4347.1 ID=mRNA_E-fasciculatus_F_contig16420.4347.1|Name=mRNA_E-fasciculatus_F_contig16420.4347.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=938bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16420:348..1285+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16420:348..1285+ >mRNA_E-fasciculatus_F_contig16420.4347.1 ID=mRNA_E-fasciculatus_F_contig16420.4347.1|Name=mRNA_E-fasciculatus_F_contig16420.4347.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=498bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16420:348..1285+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |