mRNA_E-fasciculatus_F_contig16416.4343.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16416.4343.1
Unique NamemRNA_E-fasciculatus_F_contig16416.4343.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16416.4343.1 vs. uniprot
Match: A0A6H5L932_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L932_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 2.950e-24
Identity = 59/84 (70.24%), Postives = 60/84 (71.43%), Query Frame = -3 
Query:   26 HAHFGPPGEDLGLPAGERGWGPEEGGGAEDDGEWGGNGRGAAPPPADGGSGFQEWSAFDESPPRAAPPRRAPMGATAGGGRGHP 277
            HA FGPPGEDL LP GERGWGP+EG                    ADGGSGFQEWSAFDESPPRAAPPRRAPMGA AGGGRGHP
Sbjct: 1251 HAPFGPPGEDLALPPGERGWGPDEGXXXXXXXXXXXXXXXXXXXXADGGSGFQEWSAFDESPPRAAPPRRAPMGAPAGGGRGHP 1334
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16416.4343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L932_9PHAE2.950e-2470.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16416contigE-fasciculatus_F_contig16416:2397..2710 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size314
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928111.0818634-CDS-E-fasciculatus_F_contig16416:2396..27081622928111.0818634-CDS-E-fasciculatus_F_contig16416:2396..2708Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16416 2397..2708 +
1695995823.7783682-CDS-E-fasciculatus_F_contig16416:2396..27081695995823.7783682-CDS-E-fasciculatus_F_contig16416:2396..2708Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16416 2397..2708 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16416.4343.1prot_E-fasciculatus_F_contig16416.4343.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16416 2397..2708 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16416.4343.1

>prot_E-fasciculatus_F_contig16416.4343.1 ID=prot_E-fasciculatus_F_contig16416.4343.1|Name=mRNA_E-fasciculatus_F_contig16416.4343.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=104bp
PSGPARRRPGAPYRRPPSPPLEPVSEARRVAGTRRTPTTPGTRSRRPRAA
VRHPYRCHPTRRRLRRRLLLPVPSPVPPRAARDLPPEGRSARGRAPPGRR
PCHL
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mRNA from alignment at E-fasciculatus_F_contig16416:2397..2710+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16416.4343.1 ID=mRNA_E-fasciculatus_F_contig16416.4343.1|Name=mRNA_E-fasciculatus_F_contig16416.4343.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=314bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16416:2397..2710+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCTCGGGCCCGGCCCGCCGCCGGCCGGGTGCCCCCTACCGCCGCCCGCC
GTCGCCCCCATTGGAGCCCGTCTCGGAGGCGCGGCGCGTGGCGGGGACTC
GTCGAACGCCGACCACTCCTGGAACCCGCTCCCGCCGTCCGCGGGCGGCG
GTGCGGCACCCCTACCGTTGCCACCCCACTCGCCGTCGTCTTCGGCGCCG
CCTCCTTCTTCCGGTCCCCAGCCCCGTTCCCCCGCGGGCAGCCCGAGATC
TTCCCCCGGAGGGCCGAAGTGCGCGTGGCCGCGCCCCCCCCGGCCGCCGC
CCCTGCCACCTCGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16416:2397..2710+

>mRNA_E-fasciculatus_F_contig16416.4343.1 ID=mRNA_E-fasciculatus_F_contig16416.4343.1|Name=mRNA_E-fasciculatus_F_contig16416.4343.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=624bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16416:2397..2710+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCTCGGGCCCGGCCCGCCGCCGGCCGGGTGCCCCCTACCGCCGCCCGCC
GTCGCCCCCATTGGAGCCCGTCTCGGAGGCGCGGCGCGTGGCGGGGACTC
GTCGAACGCCGACCACTCCTGGAACCCGCTCCCGCCGTCCGCGGGCGGCG
GTGCGGCACCCCTACCGTTGCCACCCCACTCGCCGTCGTCTTCGGCGCCG
CCTCCTTCTTCCGGTCCCCAGCCCCGTTCCCCCGCGGGCAGCCCGAGATC
TTCCCCCGGAGGGCCGAAGTGCGCGTGGCCGCGCCCCCCCCGGCCGCCGC
CCCTGCCACCTCCCCTCGGGCCCGGCCCGCCGCCGGCCGGGTGCCCCCTA
CCGCCGCCCGCCGTCGCCCCCATTGGAGCCCGTCTCGGAGGCGCGGCGCG
TGGCGGGGACTCGTCGAACGCCGACCACTCCTGGAACCCGCTCCCGCCGT
CCGCGGGCGGCGGTGCGGCACCCCTACCGTTGCCACCCCACTCGCCGTCG
TCTTCGGCGCCGCCTCCTTCTTCCGGTCCCCAGCCCCGTTCCCCCGCGGG
CAGCCCGAGATCTTCCCCCGGAGGGCCGAAGTGCGCGTGGCCGCGCCCCC
CCCGGCCGCCGCCCCTGCCACCTC
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