mRNA_E-fasciculatus_F_contig16415.4342.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16415.4342.1
Unique NamemRNA_E-fasciculatus_F_contig16415.4342.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16415.4342.1 vs. uniprot
Match: D7FUA2_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA2_ECTSI)

HSP 1 Score: 48.5 bits (114), Expect = 4.890e-5
Identity = 22/27 (81.48%), Postives = 23/27 (85.19%), Query Frame = 1 
Query:   91 QTYSIERAALVALFRSTDGPNWKTKSN 171
            Q  SI+RAALVALFRSTDG NWKT SN
Sbjct:   18 QVSSIDRAALVALFRSTDGANWKTNSN 44
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16415.4342.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUA2_ECTSI4.890e-581.48Leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16415contigE-fasciculatus_F_contig16415:599..1150 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size173
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928111.0157368-CDS-E-fasciculatus_F_contig16415:600..6851622928111.0157368-CDS-E-fasciculatus_F_contig16415:600..685Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16415 601..685 -
1695995823.7517264-CDS-E-fasciculatus_F_contig16415:600..6851695995823.7517264-CDS-E-fasciculatus_F_contig16415:600..685Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16415 601..685 -
1622928111.0358021-CDS-E-fasciculatus_F_contig16415:1064..11501622928111.0358021-CDS-E-fasciculatus_F_contig16415:1064..1150Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16415 1065..1150 -
1695995823.7668357-CDS-E-fasciculatus_F_contig16415:1064..11501695995823.7668357-CDS-E-fasciculatus_F_contig16415:1064..1150Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16415 1065..1150 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16415.4342.1prot_E-fasciculatus_F_contig16415.4342.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16415 601..1150 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16415.4342.1

>prot_E-fasciculatus_F_contig16415.4342.1 ID=prot_E-fasciculatus_F_contig16415.4342.1|Name=mRNA_E-fasciculatus_F_contig16415.4342.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=57bp
RQQEQEAVREDRQPENPAARTSSSTQDDWYQTYSIERAALVALFRSTDGP
NWKTKSN
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mRNA from alignment at E-fasciculatus_F_contig16415:599..1150-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16415.4342.1 ID=mRNA_E-fasciculatus_F_contig16415.4342.1|Name=mRNA_E-fasciculatus_F_contig16415.4342.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=552bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16415:599..1150- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGGCAGCAGGAGCAGGAAGCTGTACGTGAAGACCGACAACCGGAAAACCC
CGCCGCACGCACGAGTTCCTCGACACAAGACGACTGGTCTGTTTCGCACC
ATCTGTTGTAGGCGCCGGTCTTTGCCGTCCGGCATATATGTTTGAGGTCA
GCCGGGCCCACACACGAGCTTGTCTGTATCTTGCTCCTGCGGTGACTCTT
GCCTGCAATTATCACGCGAAAAGGACCTCCCGTCTTTTTGTGTGTACTCA
CTGCTATGTGGTTTCACTTCTGTAATGCTATACGCTTGGTCACTCCCAGC
AGATCAACTTGGTGCCATGATCAGAGCCAGAAGGTTTAACGAGTTTTGTC
ACTGAGTCGCTTCATAGCCACTGTCGTGTAACCGAGCGCCAGACGACATG
GTGTCGAAGACACTGCTGTGGCTCGCATATTTTGTCTGATCGCTATTGTC
TCCCTCTCGTCGCAGGTATCAGACGTATTCCATAGAACGTGCTGCACTGG
TTGCGTTGTTCCGTTCGACCGATGGGCCGAATTGGAAGACGAAAAGCAAC
TG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16415:599..1150-

>mRNA_E-fasciculatus_F_contig16415.4342.1 ID=mRNA_E-fasciculatus_F_contig16415.4342.1|Name=mRNA_E-fasciculatus_F_contig16415.4342.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=342bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16415:599..1150- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGGCAGCAGGAGCAGGAAGCTGTACGTGAAGACCGACAACCGGAAAACCC
CGCCGCACGCACGAGTTCCTCGACACAAGACGACTGCGGCAGCAGGAGCA
GGAAGCTGTACGTGAAGACCGACAACCGGAAAACCCCGCCGCACGCACGA
GTTCCTCGACACAAGACGACTGGTATCAGACGTATTCCATAGAACGTGCT
GCACTGGTTGCGTTGTTCCGTTCGACCGATGGGCCGAATTGGAAGACGAA
AAGCAACGTATCAGACGTATTCCATAGAACGTGCTGCACTGGTTGCGTTG
TTCCGTTCGACCGATGGGCCGAATTGGAAGACGAAAAGCAAC
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