mRNA_E-fasciculatus_F_contig1641.4340.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1641.4340.1
Unique NamemRNA_E-fasciculatus_F_contig1641.4340.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1641.4340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1641contigE-fasciculatus_F_contig1641:13058..13819 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size637
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1641.4340.1prot_E-fasciculatus_F_contig1641.4340.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1641 13383..13795 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928110.4196346-UTR-E-fasciculatus_F_contig1641:13057..131011622928110.4196346-UTR-E-fasciculatus_F_contig1641:13057..13101Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1641 13058..13101 +
1695995823.4335501-UTR-E-fasciculatus_F_contig1641:13057..131011695995823.4335501-UTR-E-fasciculatus_F_contig1641:13057..13101Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1641 13058..13101 +
1622928110.434508-UTR-E-fasciculatus_F_contig1641:13141..132991622928110.434508-UTR-E-fasciculatus_F_contig1641:13141..13299Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1641 13142..13299 +
1695995823.447556-UTR-E-fasciculatus_F_contig1641:13141..132991695995823.447556-UTR-E-fasciculatus_F_contig1641:13141..13299Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1641 13142..13299 +
1622928110.4492164-UTR-E-fasciculatus_F_contig1641:13310..133821622928110.4492164-UTR-E-fasciculatus_F_contig1641:13310..13382Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1641 13311..13382 +
1695995823.4555762-UTR-E-fasciculatus_F_contig1641:13310..133821695995823.4555762-UTR-E-fasciculatus_F_contig1641:13310..13382Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1641 13311..13382 +
1622928110.4902513-UTR-E-fasciculatus_F_contig1641:13795..138191622928110.4902513-UTR-E-fasciculatus_F_contig1641:13795..13819Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1641 13796..13819 +
1695995823.4876468-UTR-E-fasciculatus_F_contig1641:13795..138191695995823.4876468-UTR-E-fasciculatus_F_contig1641:13795..13819Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1641 13796..13819 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928110.4657993-CDS-E-fasciculatus_F_contig1641:13382..135831622928110.4657993-CDS-E-fasciculatus_F_contig1641:13382..13583Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1641 13383..13583 +
1695995823.465245-CDS-E-fasciculatus_F_contig1641:13382..135831695995823.465245-CDS-E-fasciculatus_F_contig1641:13382..13583Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1641 13383..13583 +
1622928110.478179-CDS-E-fasciculatus_F_contig1641:13657..137951622928110.478179-CDS-E-fasciculatus_F_contig1641:13657..13795Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1641 13658..13795 +
1695995823.4766922-CDS-E-fasciculatus_F_contig1641:13657..137951695995823.4766922-CDS-E-fasciculatus_F_contig1641:13657..13795Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1641 13658..13795 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1641.4340.1

>prot_E-fasciculatus_F_contig1641.4340.1 ID=prot_E-fasciculatus_F_contig1641.4340.1|Name=mRNA_E-fasciculatus_F_contig1641.4340.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=113bp
MVSGYTRNIRNTPIKYFALFLTFARTDTCTHCMAHMTHDCHVGRVRRQWL
SHGAPGTSYGCPTGHIGRPTCPLGRPIGRLGRRRTSHGTLGIAIGRPKRV
QWDVHTTREYGN*
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mRNA from alignment at E-fasciculatus_F_contig1641:13058..13819+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1641.4340.1 ID=mRNA_E-fasciculatus_F_contig1641.4340.1|Name=mRNA_E-fasciculatus_F_contig1641.4340.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=762bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1641:13058..13819+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGTCCATTGGACGTCCAATGGGACGCGTGGGACGTCCAATGAACGTCCAA
TGGGACGCTTGGGACGTCCCACGGACGTCCCAAGCGTCCCTCGGACGTCC
CAAGCGTCCCACGGACGTCCCAAGCGTCCCACGGGCGTCCCATGGGACGT
CCCATGCGTCCAAACGCTTGGACGTCCCACGCGTCCAAGCCTGGGACGTC
CCACCAGTGTCCGCTGGGACGTCCAAGCATGTCCATTGGACATCCATTGG
ACGTCCATTGGACGTCCATTGGACGTCCCATGGCTGTCCCATGGGACACG
GGCGTCCAGTTTGCGCGAGTCCGTAATGGTATCAGGATACACACGAAACA
TTAGAAATACTCCCATTAAATACTTTGCACTCTTTCTTACCTTCGCAAGA
ACAGATACATGTACGCATTGCATGGCCCATATGACGCATGACTGTCATGT
GGGACGCGTGAGACGCCAATGGCTGTCCCATGGTGCGCCTGGGACGTCCT
ATGGCTGTCCAACAGGTCACATCGGCCGTCCAAGGGTTGTCCAATGGGAC
ACGTGGGACGTCCATTGGACGTCCATTGGACGTCCCACTTGTCCATTGGA
CGTCCCACTTGTCCTTTGGGACGTCCCATTGGACGCTTGGGACGTCGTCG
GACGTCCCATGGGACGCTCGGGATTGCCATTGGACGCCCCAAGCGCGTTC
AATGGGACGTACATACCACGCGCGAATATGGCAACTAGATGTAACATACC
CATCGCTACACA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1641:13058..13819+

>mRNA_E-fasciculatus_F_contig1641.4340.1 ID=mRNA_E-fasciculatus_F_contig1641.4340.1|Name=mRNA_E-fasciculatus_F_contig1641.4340.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=678bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1641:13058..13819+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTATCAGGATACACACGAAACATTAGAAATACTCCCATTAAATACTT
TGCACTCTTTCTTACCTTCGCAAGAACAGATACATGTACGCATTGCATGG
CCCATATGACGCATGACTGTCATGTGGGACGCGTGAGACGCCAATGGCTG
TCCCATGGTGCGCCTGGGACGTCCTATGGCTGTCCAACAGGTCACATCGG
CATGGTATCAGGATACACACGAAACATTAGAAATACTCCCATTAAATACT
TTGCACTCTTTCTTACCTTCGCAAGAACAGATACATGTACGCATTGCATG
GCCCATATGACGCATGACTGTCATGTGGGACGCGTGAGACGCCAATGGCT
GTCCCATGGTGCGCCTGGGACGTCCTATGGCTGTCCAACAGGTCACATCG
GCCGTCCCACTTGTCCTTTGGGACGTCCCATTGGACGCTTGGGACGTCGT
CGGACGTCCCATGGGACGCTCGGGATTGCCATTGGACGCCCCAAGCGCGT
TCAATGGGACGTACATACCACGCGCGAATATGGCAACTAGCGTCCCACTT
GTCCTTTGGGACGTCCCATTGGACGCTTGGGACGTCGTCGGACGTCCCAT
GGGACGCTCGGGATTGCCATTGGACGCCCCAAGCGCGTTCAATGGGACGT
ACATACCACGCGCGAATATGGCAACTAG
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