mRNA_E-fasciculatus_F_contig1641.4339.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1641.4339.1
Unique NamemRNA_E-fasciculatus_F_contig1641.4339.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1641.4339.1 vs. uniprot
Match: D8LU01_ECTSI (GT23 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU01_ECTSI)

HSP 1 Score: 422 bits (1084), Expect = 1.380e-143
Identity = 213/280 (76.07%), Postives = 219/280 (78.21%), Query Frame = 3 
Query:   69 MIEAIPAAGRSLVFMLMCLGISESVLERQGVDSRRDMAAFSKEWVEEFGKGELGCAGPAIDAYEWRNAGYGSNINFLAIVWANALMAGRQDLSVVVRTDEWFPRTICNVTSNGEETRGWPCFFAEVPHLCAFDADQDWIQYNLLQNVSASDIRDASSRKGLKYVRRHLSSTRASFQSMRIDPMRVLAMLVDHLHSYLQPWFKADIQRILDEPDIAEMRNGKYVGMHIRRTDKANEVKLTKTEVYFRKVAQYLRSSPGGLTAADITGLWLSTDEVSVYNEV 908
            MIEAIPAAGRSLVFMLMCLG+SESVLERQGVDSR+DMA FS EW+EEFG G LGC G AIDAYEWRNAGYGSNINFL IVWANA+MAGRQDL+VVVRTDEWFPRTICNVTS GEETRGWPCFFAEVPHLCAFDADQ                                                   MLVDHLHSYLQPWFKADIQRILDEPDIAEMRNGKYVGMHIRRTDKANE KLTKTEVYFRKVAQYLRSSPGGL AADITGLWLSTDEVSV+NEV
Sbjct:    1 MIEAIPAAGRSLVFMLMCLGVSESVLERQGVDSRKDMAVFSNEWMEEFGSGALGCVGSAIDAYEWRNAGYGSNINFLTIVWANAMMAGRQDLAVVVRTDEWFPRTICNVTSYGEETRGWPCFFAEVPHLCAFDADQ---------------------------------------------------MLVDHLHSYLQPWFKADIQRILDEPDIAEMRNGKYVGMHIRRTDKANETKLTKTEVYFRKVAQYLRSSPGGLRAADITGLWLSTDEVSVFNEV 229
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BLAST of mRNA_E-fasciculatus_F_contig1641.4339.1 vs. uniprot
Match: D8LU00_ECTSI (Similar to putative alpha-6-fucosyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU00_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 1.130e-54
Identity = 92/171 (53.80%), Postives = 128/171 (74.85%), Query Frame = 3 
Query:  717 MRNGKYVGMHIRRTDKANEVKLTKTEVYFRKVAQYLRSSPGGLTAADITGLWLSTDEVSVYNEVKRLVPRYFPNVKPSAVIFVSGRVTVRAMPPGLANQDGQRDRNTYEAMVLLKAELDMLAGATVFAGTYSSNMGRLLALMRRSLNKPDKSSLSTDRPSWFLGR*RGRRE 1229
            MR+GKYVG+HIRRTDKANEV+  KT+ Y  K   YL S    + A +ITG+W+S+D+ +V++EVK+L   +FP + P+AV++V+G   V+ M        G  DRN+YEAMV L+AEL+MLAG+ VF+GT+SSN+GR++ALMR++LN PD+S++S D P+WF GR R RRE
Sbjct:    1 MRSGKYVGLHIRRTDKANEVQPVKTKAYLAKAVNYLASPTNDMAATNITGIWVSSDDEAVFDEVKQLASEFFPGIAPNAVLYVTGGKPVQLMR-------GAADRNSYEAMVYLRAELEMLAGSAVFSGTFSSNVGRMVALMRKTLNMPDESAVSVDFPAWFAGRQRHRRE 164
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BLAST of mRNA_E-fasciculatus_F_contig1641.4339.1 vs. uniprot
Match: D7G435_ECTSI (Alpha-(1,6)-fucosyltransferase, family GT23 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G435_ECTSI)

HSP 1 Score: 191 bits (486), Expect = 2.020e-51
Identity = 116/353 (32.86%), Postives = 177/353 (50.14%), Query Frame = 3 
Query:  186 FSKEWVEEFGKGELGCAGPAIDAYEWRNAGYGSNINFLAIVWANALMAGR-QDLSVVVRTDE--WFPRTICNVTSNGEETRGWPCFFAEVPHLCAFDADQDWIQYNLLQNVSASDIRDASSRKGLKYVRRHLSSTRASFQSMRIDPMRVLAMLVDHLHSYLQPWFKADIQRILDEPDIAEMRNGKYVGMHIRRTDKANE---VKLTKTEVYFRKVAQYLRSSPGGLTAADITGLWLSTDEVSVYNEVKRLVPRYFPNVKPSAVIFVSGRVTVRAMPPGLANQDGQRDRNTYEAMVLLKAELDMLAGATVFAGTYSSNMGRLLALMRRSLNKPDKSS-LSTDRPSWFLGR*RGR 1223
            FS EW  E+ +GE GC   A  ++ WR  G GSNIN +   W  AL   +  D++VVV  ++  W     C   S GE   GW C F  +PHLC F + + W +Y + +++  +++ + + R     VR H     AS +   +D +  LA +  +L S + PW +AD+  +         +   ++G+HIRR DK        +   + Y     ++L      L+  DI G+W+++DE  V  +VK++ P Y PNV    + + SG V      P +     + D+ TY   V   A+L  L  A +F GT+SSNMGRLL L+R S+   D++S +S D P W  GR R R
Sbjct:  106 FSSEWAVEYARGEEGCD-LARGSFMWRGQGLGSNINNMLNAWVYALSVEKWSDMTVVVGENQMKWVD---CGEESGGEAQTGWDCIFKPMPHLCTFPSAESWKEYMVSKDLPEAELVEVA-RLDQDAVRFHPEEIVASLEGSGVDHIAALAAMAKYLWSNVTPWLQADVDFVTRASPSDVFQESPFLGLHIRRGDKVTHGRRASMYLCKEYLEAAVEFLEGDDSQLSVGDIKGIWVASDEPKVIAKVKQIAPDYLPNVSEDDIFWASGGVEGG---PEIGRTATRTDKETYADFVYTLADLQQLTAADLFVGTFSSNMGRLLVLLRESIGLKDRASAVSIDGP-WRAGRRRRR 449
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BLAST of mRNA_E-fasciculatus_F_contig1641.4339.1 vs. uniprot
Match: A0A6H5JTL0_9PHAE (GT23 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTL0_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 8.960e-49
Identity = 114/350 (32.57%), Postives = 178/350 (50.86%), Query Frame = 3 
Query:  186 FSKEWVEEFGKGELGCAGPAIDAYEWRNAGYGSNINFLAIVWANALMAGR-QDLSVVVRTDEWFPRTICNVTSNGEETRGWPCFFAEVPHLCAFDADQDWIQYNLLQNVSASDIRDASSRKGLKYVRRHLSSTRASFQSMRIDPMRVLAMLVDHLHSYLQPWFKADIQRILDEPDIAEMRNGKYVGMHIRRTDKAN--EVKLTKTEVYFRKVAQYLRSSPGGLTAADITGLWLSTDEVSVYNEVKRLVPRYFPNVKPSAVIFVSGRVTVRAMPPGLANQDGQRDRNTYEAMVLLKAELDMLAGATVFAGTYSSNMGRLLALMRRSLNKPDKSS-LSTDRPSWFLGR*RGR 1223
            FS EW  E+ +GE GC   A  ++ WR  G GSN+N +   W  AL   +  D++VVV  ++   +  C   S GE   GW C F  +PHLC F + ++   + + + +  +D+ +A+ R     VR H     AS +   +D +  LA +  +L S + PW +AD+  +         +   ++G+HIRR DK +  E  +   E Y     ++L  +   L+  DI G+W+++DE  V  +VK++   Y PNV    + + SG V      P +     + D+ TY   V   A+L  L  A +F GT+SSN+GRLL L+R S+   D++S +S D P W  GR R R
Sbjct:  102 FSSEWAAEYARGEAGCD-LARGSFMWRGHGLGSNVNNMLNAWVYALSVEKWSDMTVVVDENQ-MKQVDCEEESGGEAQAGWDCLFKPMPHLCTFPSAEE---HMVSKGLPKADLVEAA-RLDQDAVRFHPEEIVASLEGSGVDHIAALAAMAKYLWSNVTPWLQADVDFVTRASPSDVFQESPFLGLHIRRGDKVSQGEASMYLCEEYLETAVEFLEGNDSQLSVGDIKGIWVASDEPKVIAKVKQIAQDYLPNVSEGDIFWASGGVEGG---PEIERTATRTDQETYADFVYTFADLQQLTAADLFVGTFSSNIGRLLVLLRESIGLKDRASAVSIDGP-WRAGRRRRR 441
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BLAST of mRNA_E-fasciculatus_F_contig1641.4339.1 vs. uniprot
Match: A0A6H5LR29_9PHAE (GT23 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LR29_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 4.980e-22
Identity = 65/216 (30.09%), Postives = 111/216 (51.39%), Query Frame = 3 
Query:  567 HLSSTRASFQSMRIDPMRVLAMLVDHLHSYLQPWFKADIQRILDEPDIAEMRNGKYVGMHIRRTDKANEVKLTKTEV--YFRKVAQYLRSSPGGLTAADITGLWLSTDEVSVYNEVKRLVPRYFPNVKPSAVIFVSGRVTVRAMPPGLANQDGQRDRNTYEAMVLLKAELDMLAGATVFAGTYSSNMGRLLALMRRSLNKPDKSS-LSTDRPSWFL 1205
            H +  R   +       +V+A L   L   L PW + D+++ L+ PD+   R   +VG+H+RR DK  E +  K E   Y    A++   +       DI  +W+++D+  V  EV+ +  +YFPNV    +++VSG     A+     +Q        Y+  V++ A+L MLA  ++F GTY+SN+ RL+AL+R  ++   + S +S D+  + L
Sbjct:   86 HSAPRREHLRDSFAPDTQVMARL---LWKNLTPWLQEDVRKALERPDLDVFRRKPFVGLHVRRGDKVGEGEAQKVETKEYLSAAARFF-DNKASQDKQDIEAIWVASDDHKVVEEVRAIARQYFPNVLDEDIVWVSGGARGGAVTTHTKSQG-------YQGFVMVFADLKMLAAGSLFVGTYTSNVSRLVALLREGIHGHARDSCISLDKTEFGL 290
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BLAST of mRNA_E-fasciculatus_F_contig1641.4339.1 vs. uniprot
Match: A0A7S0BFM2_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BFM2_9RHOD)

HSP 1 Score: 73.6 bits (179), Expect = 3.690e-11
Identity = 61/175 (34.86%), Postives = 93/175 (53.14%), Query Frame = 3 
Query:  684 QRILDEPDIAEMRNGKYVGMHIRRTDKANEVKLTKTEVYFRKVAQYLRSSPGGLTAADITGLWLSTDEVSVYNEVKRLVPRYFPNVKPSAVIFVSGRVTVRAMPPGLANQDGQRDRNTYEAMVLLKAELDMLAGATVFAGTYSSNMGRLLALMRRSLNKPDKSSLSTDRPSWFLG 1208
            +R  D     ++R  ++VG+HIRR DKA EV L   E Y    A+ +R S        I+ ++L+TD+ S+  E++ L+P Y      +   F   + T        AN+D  R   T  + + L AE+D+L  A  F GTYSSN+GRLLA++R   +K  ++S+S D  +W  G
Sbjct:   36 ERTNDAMRRIDLRPDEFVGLHIRRGDKALEVPLIPLESY----AEIVRMSDPA-----ISKIFLATDDGSIIWELRDLLPEY------AIYTFADPQSTGHLQRN--ANEDPMRQ--TVLSTMSLVAEIDILRQAKYFIGTYSSNIGRLLAVLR---DKDIRTSISMD-VAWSSG 187
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BLAST of mRNA_E-fasciculatus_F_contig1641.4339.1 vs. uniprot
Match: A0A7S3EDL2_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EDL2_9RHOD)

HSP 1 Score: 71.2 bits (173), Expect = 1.430e-9
Identity = 58/175 (33.14%), Postives = 92/175 (52.57%), Query Frame = 3 
Query:  684 QRILDEPDIAEMRNGKYVGMHIRRTDKANEVKLTKTEVYFRKVAQYLRSSPGGLTAADITGLWLSTDEVSVYNEVKRLVPRYFPNVKPSAVIFVSGRVTVRAMPPGLANQDGQRDRNTYEAMVLLKAELDMLAGATVFAGTYSSNMGRLLALMRRSLNKPDKSSLSTDRPSWFLG 1208
            +R  D     ++   +++G+HIRR DKA EV L   E Y    A+ +R     +    IT ++L+TD+ S+  E++ L+P Y      +   F   + T        AN+D  R   T  + + L AE+D++  A  F GTYSSN+GRLLA++R   +K  ++S+S D  +W  G
Sbjct:  223 ERTNDAMQRMDLHPDQFIGLHIRRGDKALEVPLIPLESY----AEIVR-----MCDPAITKIFLATDDGSIIWELRDLLPEY------AIYTFADPQSTGHLQRN--ANEDPMR--RTVLSTMSLVAEIDIIRQAKYFIGTYSSNIGRLLAVLR---DKDIRTSISMD-VAWSSG 374
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1641.4339.1 vs. uniprot
Match: R7QMX9_CHOCR (Alpha-(1,6)-fucosyltransferase, family GT23 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QMX9_CHOCR)

HSP 1 Score: 55.5 bits (132), Expect = 3.980e-5
Identity = 53/171 (30.99%), Postives = 83/171 (48.54%), Query Frame = 3 
Query:  675 ADIQRILDEPDIAEMRNGKYVGMHIRRTDKANEVKLTKTEVYFRKVAQYLRSSPGGLTAADITGLWLSTDEVSVYNEVKRLVPRYFPNVKPSAVIFVSGRVTVRAMPPGLANQDGQRDRNTYEAMVLLKAELDMLAGATVFAGTYSSNMGRLLALMRRSLNKPDKSSLSTD 1187
            A ++ +L+E  +     G+YVG+H+RR DK+ EV     +V   + A  +R+  G   A  +     + D  SV    + L  R         V+ + G    R     LA   G    N Y  +V L AE++ L GA VF GT+SSN+GRL+ ++R      +++S+S D
Sbjct:   24 AAVRVVLEEASV--WGAGEYVGVHVRRGDKSKEV----ADVPLWRYAAAVRAVSGEEMAVFVA----ADDGASVRGLRQLLAGR--------KVVAIRG-AEGRGGHDQLATNRGYMKEN-YGRVVELLAEVEALRGAKVFVGTFSSNLGRLVHVLREG---DERNSVSLD 171
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1641.4339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LU01_ECTSI1.380e-14376.07GT23 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LU00_ECTSI1.130e-5453.80Similar to putative alpha-6-fucosyltransferase n=1... [more]
D7G435_ECTSI2.020e-5132.86Alpha-(1,6)-fucosyltransferase, family GT23 n=1 Ta... [more]
A0A6H5JTL0_9PHAE8.960e-4932.57GT23 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5LR29_9PHAE4.980e-2230.09GT23 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
A0A7S0BFM2_9RHOD3.690e-1134.86Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S3EDL2_9RHOD1.430e-933.14Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
R7QMX9_CHOCR3.980e-530.99Alpha-(1,6)-fucosyltransferase, family GT23 n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1641contigE-fasciculatus_F_contig1641:6177..11783 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score191.0
Seed ortholog evalue9.9e-46
Seed eggNOG ortholog2880.D7G435
KEGG koko:K00717
KEGG ReactionR05988,R09319
KEGG Pathwayko00510,ko00513,ko00533,ko01100,ko05202,map00510,map00513,map00533,map01100,map05202
KEGG ModuleM00075
EggNOG free text desc.glycoprotein 6-alpha-L-fucosyltransferase activity
EggNOG OGsKOG3705@1,KOG3705@2759
EC2.4.1.68
COG Functional cat.M
CAZyGT23
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_003660.1
Exons9
Model size1605
Cds size1146
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928110.7629046-UTR-E-fasciculatus_F_contig1641:6176..65671622928110.7629046-UTR-E-fasciculatus_F_contig1641:6176..6567Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1641 6177..6567 -
1695995823.6196353-UTR-E-fasciculatus_F_contig1641:6176..65671695995823.6196353-UTR-E-fasciculatus_F_contig1641:6176..6567Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1641 6177..6567 -
1622928110.9069147-UTR-E-fasciculatus_F_contig1641:10624..106341622928110.9069147-UTR-E-fasciculatus_F_contig1641:10624..10634Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1641 10625..10634 -
1695995823.707696-UTR-E-fasciculatus_F_contig1641:10624..106341695995823.707696-UTR-E-fasciculatus_F_contig1641:10624..10634Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1641 10625..10634 -
1622928110.9208252-UTR-E-fasciculatus_F_contig1641:11725..117831622928110.9208252-UTR-E-fasciculatus_F_contig1641:11725..11783Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1641 11726..11783 -
1695995823.7205849-UTR-E-fasciculatus_F_contig1641:11725..117831695995823.7205849-UTR-E-fasciculatus_F_contig1641:11725..11783Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1641 11726..11783 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928110.7792985-CDS-E-fasciculatus_F_contig1641:6567..67471622928110.7792985-CDS-E-fasciculatus_F_contig1641:6567..6747Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1641 6568..6747 -
1695995823.6341798-CDS-E-fasciculatus_F_contig1641:6567..67471695995823.6341798-CDS-E-fasciculatus_F_contig1641:6567..6747Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1641 6568..6747 -
1622928110.7945547-CDS-E-fasciculatus_F_contig1641:7009..71381622928110.7945547-CDS-E-fasciculatus_F_contig1641:7009..7138Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1641 7010..7138 -
1695995823.6435192-CDS-E-fasciculatus_F_contig1641:7009..71381695995823.6435192-CDS-E-fasciculatus_F_contig1641:7009..7138Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1641 7010..7138 -
1622928110.8145688-CDS-E-fasciculatus_F_contig1641:7901..80121622928110.8145688-CDS-E-fasciculatus_F_contig1641:7901..8012Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1641 7902..8012 -
1695995823.6523328-CDS-E-fasciculatus_F_contig1641:7901..80121695995823.6523328-CDS-E-fasciculatus_F_contig1641:7901..8012Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1641 7902..8012 -
1622928110.8323889-CDS-E-fasciculatus_F_contig1641:8196..83611622928110.8323889-CDS-E-fasciculatus_F_contig1641:8196..8361Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1641 8197..8361 -
1695995823.6603072-CDS-E-fasciculatus_F_contig1641:8196..83611695995823.6603072-CDS-E-fasciculatus_F_contig1641:8196..8361Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1641 8197..8361 -
1622928110.8556902-CDS-E-fasciculatus_F_contig1641:8573..87261622928110.8556902-CDS-E-fasciculatus_F_contig1641:8573..8726Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1641 8574..8726 -
1695995823.6683283-CDS-E-fasciculatus_F_contig1641:8573..87261695995823.6683283-CDS-E-fasciculatus_F_contig1641:8573..8726Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1641 8574..8726 -
1622928110.8718379-CDS-E-fasciculatus_F_contig1641:9724..99061622928110.8718379-CDS-E-fasciculatus_F_contig1641:9724..9906Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1641 9725..9906 -
1695995823.6774657-CDS-E-fasciculatus_F_contig1641:9724..99061695995823.6774657-CDS-E-fasciculatus_F_contig1641:9724..9906Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1641 9725..9906 -
1622928110.8827596-CDS-E-fasciculatus_F_contig1641:10254..103921622928110.8827596-CDS-E-fasciculatus_F_contig1641:10254..10392Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1641 10255..10392 -
1695995823.6892152-CDS-E-fasciculatus_F_contig1641:10254..103921695995823.6892152-CDS-E-fasciculatus_F_contig1641:10254..10392Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1641 10255..10392 -
1622928110.893168-CDS-E-fasciculatus_F_contig1641:10536..106241622928110.893168-CDS-E-fasciculatus_F_contig1641:10536..10624Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1641 10537..10624 -
1695995823.6984754-CDS-E-fasciculatus_F_contig1641:10536..106241695995823.6984754-CDS-E-fasciculatus_F_contig1641:10536..10624Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1641 10537..10624 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1641.4339.1prot_E-fasciculatus_F_contig1641.4339.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1641 6568..10624 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1641.4339.1

>prot_E-fasciculatus_F_contig1641.4339.1 ID=prot_E-fasciculatus_F_contig1641.4339.1|Name=mRNA_E-fasciculatus_F_contig1641.4339.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=382bp
MIEAIPAAGRSLVFMLMCLGISESVLERQGVDSRRDMAAFSKEWVEEFGK
GELGCAGPAIDAYEWRNAGYGSNINFLAIVWANALMAGRQDLSVVVRTDE
WFPRTICNVTSNGEETRGWPCFFAEVPHLCAFDADQDWIQYNLLQNVSAS
DIRDASSRKGLKYVRRHLSSTRASFQSMRIDPMRVLAMLVDHLHSYLQPW
FKADIQRILDEPDIAEMRNGKYVGMHIRRTDKANEVKLTKTEVYFRKVAQ
YLRSSPGGLTAADITGLWLSTDEVSVYNEVKRLVPRYFPNVKPSAVIFVS
GRVTVRAMPPGLANQDGQRDRNTYEAMVLLKAELDMLAGATVFAGTYSSN
MGRLLALMRRSLNKPDKSSLSTDRPSWFLGR*
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mRNA from alignment at E-fasciculatus_F_contig1641:6177..11783-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1641.4339.1 ID=mRNA_E-fasciculatus_F_contig1641.4339.1|Name=mRNA_E-fasciculatus_F_contig1641.4339.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=5607bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1641:6177..11783- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CACATCTCTCCAACGCCAACCGCCTACCTCTAACCCTTCGACCACGTGAC
GCCACACGGTGAGACGGCTGGTACTTTATATGTCCACAAGCGTCGGATCG
ATGTCTGTCCCATAGCACGTCATGCGAGTCACGTATGTCGCAGGGAGACA
GTGCTGCTGTGTTCTTGGTATCCAAGCAAACCACGTAGTACGCTATGTAG
CCTAGTATCTTTGGCATGCCTCCCACCGCAACCCGAAAATCGGCACACAA
GATACATGCTTCTCCCGCGACAAGTAGACTAGTGGGCGATCACAAGTTTG
TTATCCACGAGGATGCCCAAGGATCATCACAACCAACCGTGCAAACAATA
TGAGCCCCACCGTTGGCCGATTGTATCCATAAAGAATTCCTCCGCCTCTC
AACGCACAACTCCGTACGCATCAGCACAGGATACATACCTACATGTAGTA
CACGACACCTACCTACAGTAGTCTACCCGCAGGTTCGGCTACCTAGCCTC
CCAGTAACACTGAAAGTTGTACTACTGTAGTCTACGTACTTTCCCACGCT
TTGGGCTCGGGGCATAACCCTAGGTGCATGTACCTCTCAATGCAAGACAC
GGTTTGACAGCGGCAAGCATTCTGCATGGATTCCGTGGTGATTTTATTAT
ACCCTTGGCCAAGCGTCGTTAAGTCCATGGTTGGAGACTTGATCTCCCCC
GGCACCTCCGATCACGTGAGCGGTATAAAGCCGTGGAGAACACGTTTCAT
GTCCGTACATAGCACCATTTAGTGCACCCCAGGTGCTTCACATGCATCCG
CATACGAAGCCTACTTCTAGCTTCCTCTTGCCTCGCCTGTACATGTAGCA
CTGATCAACAGTGGGAGACCGACCACATCCCCGAAAGGAGGTGACTTCCG
CGCACGACTACTGAAGGCGATGGCAAGAATAGCGCCCTACAATGATACCC
ACTAATCCGCGTTTTTCCCCTACTAAACCATATGTGTCACGCGACATAGC
ATCCTATACTCAGCAATCCGAATTCCTTAACTCCACCAAGCAGATTTATC
AGCCTACTGCTGTACCGATGCAGTTCTGTTCAATAAATCTCCTTGGGCGC
TGCCAACCCCTGATCGACCCAGGTTTTCACCCGCTGACCACTTGAACAGG
GATTTGATCATGATCGAGGCGATTCCAGCCGCAGGGCGGTCCCTAGTCTT
CATGCTCATGTGCCTGGGTATCTCGGAAAGCGTCTTGGAACGCCAGGGTG
AGACCCAGAGATAGAGTTTAGGTCAACACACAGATATCTTGGATAATGAC
GCTATTTTATCCTTACACATAGGGCTCCCCTATGGACCGTGTTATGCTCC
TCACTACTGTTATATTTCCATTCGCATCTGTTCTCCGGTAGGAGTTGATT
CGAGAAGAGACATGGCGGCCTTTTCCAAGGAATGGGTGGAAGAATTCGGA
AAGGGCGAACTTGGATGTGCTGGTCCCGCGATAGACGCGTACGAGTGGAG
GAACGCTGGATACGGCAGCAATATCAACTGTAGGTCACAGATTATTGGCT
TCCAAGCGTTGGCAAAATACAGATGCGGATGTACCGAAAGACTCCCTGAC
AAACGTGGCAACAGACCTGTAGAGATGCAACATGCTCTCCCAGCGATCGC
TTGTCGACATGTATAACGTGAGAGAGTTGTCGGTGGCGGTGATTCCTGTG
TTTCGGGTTTGGTGACAAGCTCCAAAGGAGACAGGGTGGCCAACTGCGTT
TGCTCATCAGCGCAAAGAAGGTTGGGAGTTTGGTGACGCCGCGCGTTGCG
CGGCATTATCGCACAACTTCTTTTCCAAACTGAGCGTGCTCCCCCCACTT
CGGAATACACCTCGCCGTCCCCTGCAGTCCTTGCCATCGTGTGGGCAAAC
GCACTGATGGCGGGACGTCAGGACCTCTCCGTCGTTGTCCGGACAGATGA
ATGGTTCCCTCGGACGATATGCAACGTCACTAGCAATGGAGAAGAAACAC
GAGGCTGGCCATGCTTTTTCGCTGAGGTTCCCCACCTGTGCGCCTTCGAC
GCGGATCAGGTCTGAAGCCGTGCGCCGTACTCGTGCAGTAGGAAAACAGC
TGCGCGTCAGCGTTCGACTTCCGACATTGTACAGCAGCCTCGCGTTCTGG
CAGGGTGCTACCGTAATATTTGGCTCGCCAACGAAGATGTTTACGAGCAG
CGAGCATGTTCATGCACGAGGTCCTTATTGGAGTGACTCGCTTACTCCAA
ACACAAGATTCATGGTTGCAGAAATTTATACGATATGACCGGTGAGGTTG
TGGCTTTCGATATACGGTGAAAGCGTGCTACGAAAAAATTGGAAGCCACT
TCCAGTTAACTGGTTCCATATCCAACATCAGACAATTGGAGGTTCATAAG
TAAATCGCAAAGCTGTGCTTGTACCCTTCAGACCCACCGTAGACCGGAAC
TGACGAGTCTTTGCACGCTTCACAGTACTACAGCTTGTGACTAGACAACG
AAGTGATATAAGCCGATGACGTGGCCGACATACACCGCCAGTACTGTACC
TCGGAGCGTGAAGCAAGTACCTACCAGGATTTCTGTTGATTTTCATGCTG
TTGCTGGCGCTACTGGTGCTGCTCATGTTCTTGATGTTTCTTCATACCAG
ACGCTGTTTGGACCGCATCCTATTATTTTATCTTTACGCAAACTACGCAC
TCCCGTGGCCATGGGCCAAACCAGTAGTGTCCGTCACAAGCGAGGCCAGC
ATTGCAGTGCACTATCCCCAACCAGTCAAGGATTCTTCTCATCAAACCGC
CAACGCAAGCAGCCCAAAACATTTGCTTTGAAGGCTGTGTTTATATTCGT
GTTCTAGGCAGTATCTCAATGCATTTCTACAACGGGGGAGGTGTTTTGGG
GCGTGATAACAACGAAGATACTGCGTACTCCAACCTTGTCTGGTTGTATG
GCTTCCGGTGCAAAATCCGGAGTGACGACGCACGCGTGCAACTATCGACG
CGAGTTTCGCAGACGCTCGATGTTCGTCCGTCGTTTCGTGCGATTTTGCT
TCCTCAGGATTGGATCCAATACAACCTGCTGCAGAACGTATCAGCGAGCG
ACATACGAGATGCCAGTAGCAGAAAGGGGCTAAAATACGTTCGCAGACAC
CTTTCCTCTACGAGGGCATCATTTCAATCAATGAGGATCGACCCGATGAG
AGTCCTAGCGGTGAGCGATTTATAACGGGATCGGTTTTTGCTGCAGACGG
TGTGGTGTCGTTTGTGCATCGGCGCGCATTGTGGAAAACAGACTCACCCG
GGATGGAATCGTTAGTGATACATTCGTTTTGTTTCCGCATACCCCACGTT
TCGATTGGATGACAGCCTGGACGGCCGCACCCGAAACAACCACGACCGCA
CCTCACGTTTTCCTTTTACCAGATGCTGGTAGACCACCTGCACTCTTATC
TTCAGCCATGGTTTAAGGCTGATATTCAACGCATCCTAGATGAACCCGAC
ATCGCCGAGATGAGGAACGGGAAGTACGTCGGCATGCACATCCGCCGAAC
CGACAAGGCGAACGAAGTCAAGCTCACGAAAACCGAGGTATATGCAGCGC
AACCCACGAAACTTCGCGTGAGCATGGACGGACCCGGTGGCTTTGCTCAT
TGACAATGTTGTACGGTTTGCCTGGTACGCTCAAGATTCCTCCCGATGAA
GAAAATGCCGATGGCGCCGCGCTGCAAGCCAATGGTGGTGAACGTTTGAA
TCATATTGTTCGTCGCGACAGGTGTACTTTCGGAAGGTCGCCCAGTACTT
GAGGTCGTCGCCAGGAGGACTTACAGCTGCCGACATAACGGGCCTTTGGC
TGTCAACAGACGAAGTGTCGGTTTATAACGAGGTGGGAGGACTGCAAGCG
CCGAATCCGGCATATTATTGTTTTCCTATCCAAACCCTTGGCCAGGGGCG
GGGGGTACAAGGATGGCCAGGGTATTATGTTCGTCTTGCATGCTGGCGCC
TCTTGTGGGAAGTTTGCGAGCGATTGGATACACCTGATGGAGGCGAGCCG
ATGCCTTCATCAATGGGCTCTAAGTCGTTTTTCCTGAGGACTGGGGAGGA
GAGGAGTCTCCTGTGTGTAGGTCGCCGTTGAACTTTGCTTCGTGCTGACA
TGTTTTTCATCGGTTTCCATCAAGTTAAAGTGTCGCAGAGCATCAAGCTG
CTGGTGGTAGCGACCTCCCAGGACATTCGATGCTCTACCCAATGAGCTCA
ACACTTTTTGTCCGCCGTGGATGAGGCCTCCATCCAACCTGACAAGTTCA
AAACTCGTCGGCGGAGCCACGCGGTTCTGCATCCACCGGCTGTTATGTTG
CGATGCCAAGCTTGAGGGCGCGAAAGGTTCCCTTCTGTCCTTCGCAATGC
GCCTACGCTAGCGAGTGGACAACTACCGAATGGCCGAATCCTTTTGCCGT
CCCAAAGTTTACCGGCAACAGCATCCAATATGATGTGGGTAGGGGGTATC
AGCTTGAACAGGTCGACCATTTTGCTGCCCAGGCCACTTCTGCGCGAATA
TTTTCTACCTTGTTTCTTGTCATTGGCAGAAGCAAATTACAATCCAAGGT
TACACCCGCGAGCGTTCCTCTTTCAACCTTGTGTGTGCACATCAGGTCAA
AAGGTTGGTTCCGCGCTACTTCCCCAACGTCAAGCCTAGTGCGGTAATAT
TTGTTTCAGGACGCGTTACTGTGCGGGCAATGCCACCCGGATTGGCGAAT
CAGGATGGTCAAAGAGACCGCAATGTAAGTGCCTCGACGAGTCGGATGCG
AGCAGTGATTAGCTCGCGGAAACAGCGTGATTTTCCCTGTACTTCCGCTG
TGCGACGATCATGTTTGCGCCACGTCACAAAACCCGTTATATCGGTACTA
TGTCTCGTGTATCAAACGGTCAACGTCGCCAATGTAACGTCCTTTCTTCG
AGCATGTACATCGTCCAGTATAAGCCTCTGGCCCCCCTCTCTGATCCTCG
GGTTCCCTGGCGTTTCCTTGCCGTCATCACCCACAGACGTACGAAGCTAT
GGTACTACTCAAGGCCGAGCTGGACATGCTAGCTGGGGCAACTGTGTTTG
CTGGCACGTACTCCTCGAATATGGGGCGTCTCTTGGCTCTCATGCGTAGG
TCGTTAAACAAACCTGACAAGTCCTCCTTAAGTACCGACCGCCCCAGCTG
GTTTCTTGGGAGGTAACGCGGCCGCCGCGAGTAGACGACAGGCAAATCAG
CAGCAAATGGAGGATCACTGCCGCCTTCTTTTCCTAGTTCTGTATTTTAG
ACTCTTGCGTGGCAACCGGTGTCGTGGAGGGAAGCAGGAGGACTTGCGCA
ACAAATCCCCATCTATGTGATTGAAAGAGCTTTAGAACACTTGTGGCGAC
AATGCCCGTAGACACGTTGCAGAGGCTGGCAGAGTGAGTGTTTCTTCAAG
AGCACTTGTGCTGTACAGATTCAAGACGTTTCGTTTGGAGCTTATTTGCG
CAGGAGACGTAGAGAGGAAATAATCAGATGGGCAAATTACGTTGATATAT
TTTGCCGAAATACTGATGCACACGGCTACCTAGCATGACTTCTCAGTGAA
TATGGCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1641:6177..11783-

>mRNA_E-fasciculatus_F_contig1641.4339.1 ID=mRNA_E-fasciculatus_F_contig1641.4339.1|Name=mRNA_E-fasciculatus_F_contig1641.4339.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2292bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1641:6177..11783- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATCGAGGCGATTCCAGCCGCAGGGCGGTCCCTAGTCTTCATGCTCAT
GTGCCTGGGTATCTCGGAAAGCGTCTTGGAACGCCAGGATGATCGAGGCG
ATTCCAGCCGCAGGGCGGTCCCTAGTCTTCATGCTCATGTGCCTGGGTAT
CTCGGAAAGCGTCTTGGAACGCCAGGGAGTTGATTCGAGAAGAGACATGG
CGGCCTTTTCCAAGGAATGGGTGGAAGAATTCGGAAAGGGCGAACTTGGA
TGTGCTGGTCCCGCGATAGACGCGTACGAGTGGAGGAACGCTGGATACGG
CAGCAATATCAACTGAGTTGATTCGAGAAGAGACATGGCGGCCTTTTCCA
AGGAATGGGTGGAAGAATTCGGAAAGGGCGAACTTGGATGTGCTGGTCCC
GCGATAGACGCGTACGAGTGGAGGAACGCTGGATACGGCAGCAATATCAA
CTTCCTTGCCATCGTGTGGGCAAACGCACTGATGGCGGGACGTCAGGACC
TCTCCGTCGTTGTCCGGACAGATGAATGGTTCCCTCGGACGATATGCAAC
GTCACTAGCAATGGAGAAGAAACACGAGGCTGGCCATGCTTTTTCGCTGA
GGTTCCCCACCTGTGCGCCTTCGACGCGGATCAGTCCTTGCCATCGTGTG
GGCAAACGCACTGATGGCGGGACGTCAGGACCTCTCCGTCGTTGTCCGGA
CAGATGAATGGTTCCCTCGGACGATATGCAACGTCACTAGCAATGGAGAA
GAAACACGAGGCTGGCCATGCTTTTTCGCTGAGGTTCCCCACCTGTGCGC
CTTCGACGCGGATCAGGATTGGATCCAATACAACCTGCTGCAGAACGTAT
CAGCGAGCGACATACGAGATGCCAGTAGCAGAAAGGGGCTAAAATACGTT
CGCAGACACCTTTCCTCTACGAGGGCATCATTTCAATCAATGAGGATCGA
CCCGATGAGAGTCCTAGCGGATTGGATCCAATACAACCTGCTGCAGAACG
TATCAGCGAGCGACATACGAGATGCCAGTAGCAGAAAGGGGCTAAAATAC
GTTCGCAGACACCTTTCCTCTACGAGGGCATCATTTCAATCAATGAGGAT
CGACCCGATGAGAGTCCTAGCGATGCTGGTAGACCACCTGCACTCTTATC
TTCAGCCATGGTTTAAGGCTGATATTCAACGCATCCTAGATGAACCCGAC
ATCGCCGAGATGAGGAACGGGAAGTACGTCGGCATGCACATCCGCCGAAC
CGACAAGGCGAACGAAGTCAAGCTCACGAAAACCGAGATGCTGGTAGACC
ACCTGCACTCTTATCTTCAGCCATGGTTTAAGGCTGATATTCAACGCATC
CTAGATGAACCCGACATCGCCGAGATGAGGAACGGGAAGTACGTCGGCAT
GCACATCCGCCGAACCGACAAGGCGAACGAAGTCAAGCTCACGAAAACCG
AGGTGTACTTTCGGAAGGTCGCCCAGTACTTGAGGTCGTCGCCAGGAGGA
CTTACAGCTGCCGACATAACGGGCCTTTGGCTGTCAACAGACGAAGTGTC
GGTTTATAACGAGGTGTACTTTCGGAAGGTCGCCCAGTACTTGAGGTCGT
CGCCAGGAGGACTTACAGCTGCCGACATAACGGGCCTTTGGCTGTCAACA
GACGAAGTGTCGGTTTATAACGAGGTCAAAAGGTTGGTTCCGCGCTACTT
CCCCAACGTCAAGCCTAGTGCGGTAATATTTGTTTCAGGACGCGTTACTG
TGCGGGCAATGCCACCCGGATTGGCGAATCAGGATGGTCAAAGAGACCGC
AATGTCAAAAGGTTGGTTCCGCGCTACTTCCCCAACGTCAAGCCTAGTGC
GGTAATATTTGTTTCAGGACGCGTTACTGTGCGGGCAATGCCACCCGGAT
TGGCGAATCAGGATGGTCAAAGAGACCGCAATACGTACGAAGCTATGGTA
CTACTCAAGGCCGAGCTGGACATGCTAGCTGGGGCAACTGTGTTTGCTGG
CACGTACTCCTCGAATATGGGGCGTCTCTTGGCTCTCATGCGTAGGTCGT
TAAACAAACCTGACAAGTCCTCCTTAAGTACCGACCGCCCCAGCTGGTTT
CTTGGGAGGTAAACGTACGAAGCTATGGTACTACTCAAGGCCGAGCTGGA
CATGCTAGCTGGGGCAACTGTGTTTGCTGGCACGTACTCCTCGAATATGG
GGCGTCTCTTGGCTCTCATGCGTAGGTCGTTAAACAAACCTGACAAGTCC
TCCTTAAGTACCGACCGCCCCAGCTGGTTTCTTGGGAGGTAA
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