mRNA_E-fasciculatus_F_contig1641.4338.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-fasciculatus_F_contig1641.4338.1
Unique Name	mRNA_E-fasciculatus_F_contig1641.4338.1
Type	mRNA
Organism	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)

Homology

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BLAST of mRNA_E-fasciculatus_F_contig1641.4338.1 vs. uniprot
Match: D8LU00_ECTSI (Similar to putative alpha-6-fucosyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU00_ECTSI)

HSP 1 Score: 295 bits (754), Expect = 2.070e-93
Identity = 147/164 (89.63%), Postives = 157/164 (95.73%), Query Frame = 1

Query:  709 MRSGKYIGIHIRRTDKAKEVQPVKTKAYLAKAVNYLESRTNDLAATNITGIWVSSDDEAVFDEVKELASEFFPGVAPNAVLYVTGGKPMKLMRGAADRNSYEAMVLLRAELEMLAGAAVFSGTFSSNVGRMVALMRRTLDKPDASAVSVDFPTWFAGRQRHRRE 1200
            MRSGKY+G+HIRRTDKA EVQPVKTKAYLAKAVNYL S TND+AATNITGIWVSSDDEAVFDEVK+LASEFFPG+APNAVLYVTGGKP++LMRGAADRNSYEAMV LRAELEMLAG+AVFSGTFSSNVGRMVALMR+TL+ PD SAVSVDFP WFAGRQRHRRE
Sbjct:    1 MRSGKYVGLHIRRTDKANEVQPVKTKAYLAKAVNYLASPTNDMAATNITGIWVSSDDEAVFDEVKQLASEFFPGIAPNAVLYVTGGKPVQLMRGAADRNSYEAMVYLRAELEMLAGSAVFSGTFSSNVGRMVALMRKTLNMPDESAVSVDFPAWFAGRQRHRRE 164

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BLAST of mRNA_E-fasciculatus_F_contig1641.4338.1 vs. uniprot
Match: D8LU01_ECTSI (GT23 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU01_ECTSI)

HSP 1 Score: 216 bits (549), Expect = 4.730e-62
Identity = 108/251 (43.03%), Postives = 147/251 (58.57%), Query Frame = 1

Query:  148 IGLRQENGTFSEEWMDKFSNDPVGCAGSAKDPYLWRPSGYGSNINNMLLVWANAILEGRNDASVITQTGRYFSRTTCDVESNGVETRGGWHCIFAPVPHLCAFDSDKDWTKYNNRHHVSANDMKDGGGLKEITFIRKRRTSTEQSLAALGFSMLEVMAMLHNLLHTHVQPWFKADVEAILDKPDVAAMRSGKYIGIHIRRTDKAKEVQPVKTKAYLAKAVNYLESRTNDLAATNITGIWVSSDDEAVFDEV 900
            +  R++   FS EWM++F +  +GC GSA D Y WR +GYGSNIN + +VWANA++ GR D +V+ +T  +F RT C+V S G ETRG W C FA VPHLCAFD+D+                                                   ML + LH+++QPWFKAD++ ILD+PD+A MR+GKY+G+HIRRTDKA E +  KT+ Y  K   YL S    L A +ITG+W+S+D+ +VF+EV
Sbjct:   31 VDSRKDMAVFSNEWMEEFGSGALGCVGSAIDAYEWRNAGYGSNINFLTIVWANAMMAGRQDLAVVVRTDEWFPRTICNVTSYGEETRG-WPCFFAEVPHLCAFDADQ---------------------------------------------------MLVDHLHSYLQPWFKADIQRILDEPDIAEMRNGKYVGMHIRRTDKANETKLTKTEVYFRKVAQYLRSSPGGLRAADITGLWLSTDEVSVFNEV 229

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BLAST of mRNA_E-fasciculatus_F_contig1641.4338.1 vs. uniprot
Match: D7G435_ECTSI (Alpha-(1,6)-fucosyltransferase, family GT23 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G435_ECTSI)

HSP 1 Score: 192 bits (488), Expect = 1.030e-50
Identity = 118/349 (33.81%), Postives = 182/349 (52.15%), Query Frame = 1

Query:  175 FSEEWMDKFSNDPVGCAGSAKDPYLWRPSGYGSNINNMLLVWANAI-LEGRNDASVITQTGRYFSRTTCDVESNGVETRGGWHCIFAPVPHLCAFDSDKDWTKYNNRHHVSANDMKDGGGLKEITFIRKRRTSTEQSLAALGFSMLEVMAMLHNLLHTHVQPWFKADVEAILDKPDVAAMRSGKYIGIHIRRTDKA---KEVQPVKTKAYLAKAVNYLESRTNDLAATNITGIWVSSDDEAVFDEVKELASEFFPGVAPNAVLY----VTGGKPMKLMRGAADRNSYEAMVLLRAELEMLAGAAVFSGTFSSNVGRMVALMRRTLDKPD-ASAVSVDFPTWFAGRQRHR 1194
            FS EW  +++    GC   A+  ++WR  G GSNINNML  W  A+ +E  +D +V+    +      C  ES G E + GW CIF P+PHLC F S + W +Y     +   ++ +   L +   +R        SL   G   +  +A +   L ++V PW +ADV+ +         +   ++G+HIRR DK    +       K YL  AV +LE   + L+  +I GIWV+SD+  V  +VK++A ++ P V+ + + +    V GG  +       D+ +Y   V   A+L+ L  A +F GTFSSN+GR++ L+R ++   D ASAVS+D P W AGR+R R
Sbjct:  106 FSSEWAVEYARGEEGCD-LARGSFMWRGQGLGSNINNMLNAWVYALSVEKWSDMTVVVGENQ-MKWVDCGEESGG-EAQTGWDCIFKPMPHLCTFPSAESWKEYMVSKDLPEAELVEVARLDQDA-VRFHPEEIVASLEGSGVDHIAALAAMAKYLWSNVTPWLQADVDFVTRASPSDVFQESPFLGLHIRRGDKVTHGRRASMYLCKEYLEAAVEFLEGDDSQLSVGDIKGIWVASDEPKVIAKVKQIAPDYLPNVSEDDIFWASGGVEGGPEIGRTATRTDKETYADFVYTLADLQQLTAADLFVGTFSSNMGRLLVLLRESIGLKDRASAVSIDGP-WRAGRRRRR 449

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BLAST of mRNA_E-fasciculatus_F_contig1641.4338.1 vs. uniprot
Match: A0A6H5JTL0_9PHAE (GT23 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTL0_9PHAE)

HSP 1 Score: 191 bits (485), Expect = 2.290e-50
Identity = 118/352 (33.52%), Postives = 184/352 (52.27%), Query Frame = 1

Query:  175 FSEEWMDKFSNDPVGCAGSAKDPYLWRPSGYGSNINNMLLVWANAI-LEGRNDASVITQTGRYFSRTTCDVESNGVETRGGWHCIFAPVPHLCAFDSDKDWTKYNNRHHVSAN----DMKDGGGLKEITFIRKRRTSTEQSLAALGFSMLEVMAMLHNLLHTHVQPWFKADVEAILDKPDVAAMRSGKYIGIHIRRTDKAK--EVQPVKTKAYLAKAVNYLESRTNDLAATNITGIWVSSDDEAVFDEVKELASEFFPGVAPNAVLY----VTGGKPMKLMRGAADRNSYEAMVLLRAELEMLAGAAVFSGTFSSNVGRMVALMRRTLDKPD-ASAVSVDFPTWFAGRQRHR 1194
            FS EW  +++    GC   A+  ++WR  G GSN+NNML  W  A+ +E  +D +V+    +   +  C+ ES G E + GW C+F P+PHLC F S ++       H VS      D+ +   L +   +R        SL   G   +  +A +   L ++V PW +ADV+ +         +   ++G+HIRR DK    E      + YL  AV +LE   + L+  +I GIWV+SD+  V  +VK++A ++ P V+   + +    V GG  ++      D+ +Y   V   A+L+ L  A +F GTFSSN+GR++ L+R ++   D ASAVS+D P W AGR+R R
Sbjct:  102 FSSEWAAEYARGEAGCD-LARGSFMWRGHGLGSNVNNMLNAWVYALSVEKWSDMTVVVDENQ-MKQVDCEEESGG-EAQAGWDCLFKPMPHLCTFPSAEE-------HMVSKGLPKADLVEAARLDQDA-VRFHPEEIVASLEGSGVDHIAALAAMAKYLWSNVTPWLQADVDFVTRASPSDVFQESPFLGLHIRRGDKVSQGEASMYLCEEYLETAVEFLEGNDSQLSVGDIKGIWVASDEPKVIAKVKQIAQDYLPNVSEGDIFWASGGVEGGPEIERTATRTDQETYADFVYTFADLQQLTAADLFVGTFSSNIGRLLVLLRESIGLKDRASAVSIDGP-WRAGRRRRR 441

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BLAST of mRNA_E-fasciculatus_F_contig1641.4338.1 vs. uniprot
Match: A0A6H5LR29_9PHAE (GT23 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LR29_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 2.980e-25
Identity = 62/171 (36.26%), Postives = 103/171 (60.23%), Query Frame = 1

Query:  610 EVMAMLHNLLHTHVQPWFKADVEAILDKPDVAAMRSGKYIGIHIRRTDKAKE--VQPVKTKAYLAKAVNYLESRTNDLAATNITGIWVSSDDEAVFDEVKELASEFFPGVAPNAVLYVTGGKPMKLMRGAADRNSYEAMVLLRAELEMLAGAAVFSGTFSSNVGRMVALMR 1116
            +VMA    LL  ++ PW + DV   L++PD+   R   ++G+H+RR DK  E   Q V+TK YL+ A  + +++ +     +I  IWV+SDD  V +EV+ +A ++FP V    +++V+GG     +        Y+  V++ A+L+MLA  ++F GT++SNV R+VAL+R
Sbjct:  103 QVMA---RLLWKNLTPWLQEDVRKALERPDLDVFRRKPFVGLHVRRGDKVGEGEAQKVETKEYLSAAARFFDNKASQ-DKQDIEAIWVASDDHKVVEEVRAIARQYFPNVLDEDIVWVSGGARGGAVTTHTKSQGYQGFVMVFADLKMLAAGSLFVGTYTSNVSRLVALLR 269

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BLAST of mRNA_E-fasciculatus_F_contig1641.4338.1 vs. uniprot
Match: R7QMX9_CHOCR (Alpha-(1,6)-fucosyltransferase, family GT23 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QMX9_CHOCR)

HSP 1 Score: 64.3 bits (155), Expect = 5.060e-8
Identity = 57/177 (32.20%), Postives = 90/177 (50.85%), Query Frame = 1

Query:  667 ADVEAILDKPDVAAMRSGKYIGIHIRRTDKAKEVQPVKTKAYLAKAVNYLESRTNDLAATNITGIWVSSDDEAVFDEVKELASEFFPGVAPNAVLYVTGGK------PMKLMRGAADRNSYEAMVLLRAELEMLAGAAVFSGTFSSNVGRMVALMRRTLDKPDASAVSVDFPTWFAG 1179
            A V  +L++  V    +G+Y+G+H+RR DK+KEV  V    Y A AV  +              ++V++DD A    +++L       +A   V+ + G +       +   RG    N Y  +V L AE+E L GA VF GTFSSN+GR+V ++R   +  + ++VS+D   W  G
Sbjct:   24 AAVRVVLEEASVWG--AGEYVGVHVRRGDKSKEVADVPLWRYAA-AVRAVSGEE--------MAVFVAADDGASVRGLRQL-------LAGRKVVAIRGAEGRGGHDQLATNRGYMKEN-YGRVVELLAEVEALRGAKVFVGTFSSNLGRLVHVLR---EGDERNSVSLD-DRWAPG 177

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BLAST of mRNA_E-fasciculatus_F_contig1641.4338.1 vs. uniprot
Match: A0A7S0BFM2_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BFM2_9RHOD)

HSP 1 Score: 61.2 bits (147), Expect = 7.630e-7
Identity = 52/160 (32.50%), Postives = 92/160 (57.50%), Query Frame = 1

Query:  709 MRSGKYIGIHIRRTDKAKEVQPVKTKAYLAKAVNYLESRTNDLAATNITGIWVSSDDEAVFDEVKELASEFFPGVAPNAVLYVTGGKPMKLMRGAAD---RNSYEAMVLLRAELEMLAGAAVFSGTFSSNVGRMVALMRRTLDKPDASAVSVDFPTWFAG 1179
            +R  +++G+HIRR DKA EV  +  ++Y A+ V     R +D A   I+ I++++DD ++  E+++L  E+   +   A    TG     L R A +   R +  + + L AE+++L  A  F GT+SSN+GR++A++R   DK   +++S+D   W +G
Sbjct:   47 LRPDEFVGLHIRRGDKALEVPLIPLESY-AEIV-----RMSDPA---ISKIFLATDDGSIIWELRDLLPEY--AIYTFADPQSTG----HLQRNANEDPMRQTVLSTMSLVAEIDILRQAKYFIGTYSSNIGRLLAVLR---DKDIRTSISMDV-AWSSG 187

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BLAST of mRNA_E-fasciculatus_F_contig1641.4338.1 vs. uniprot
Match: A0A1X6NXA9_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NXA9_PORUM)

HSP 1 Score: 62.0 bits (149), Expect = 2.440e-6
Identity = 52/169 (30.77%), Postives = 75/169 (44.38%), Query Frame = 1

Query:  721 KYIGIHIRRTDKAKEVQPVKTKAYLAKAVNYLE----------------SRTNDLAATNITGIWVSSDDEAVFDEVKELASEFFPGVAPNAVLYVTGGKPMKLMRGAADRNSYEAMVLLRAELEMLAGAAVFSGTFSSNVGRMVALMRRTLDKPDASAVSVDFPTWFAG 1179
            +Y+G+H+RR DKA EV PV  +AY A+ V  L                 S      A  +T ++V+SDD                        +         +  AA   + +A+  L A++E+L GAA F G+ +SN+GR+V L+R     P  SAVSVD   W  G
Sbjct:  324 RYVGVHLRRGDKATEVPPVPVEAY-ARLVTLLAAADXXXXXXXXXXXXTSGXXXADAPPLTAVYVASDDXXXXXXXXXXXXXXXXXXXXXXXXHRQAA-----LNAAAWGATADAVAALWADVELLVGAAAFVGSGTSNLGRVVQLLRLARRAPPRSAVSVD-TRWGGG 485

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BLAST of mRNA_E-fasciculatus_F_contig1641.4338.1 vs. uniprot
Match: A0A7S0FBN4_9DINO (Hypothetical protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0FBN4_9DINO)

HSP 1 Score: 59.7 bits (143), Expect = 4.340e-6
Identity = 44/149 (29.53%), Postives = 71/149 (47.65%), Query Frame = 1

Query:  673 VEAILDKPDVAAMRSGKYIGIHIRRTDKAKEVQPVKTKAYLAKAVNYLESRTNDLAATNITGIWVSSDDEAVFDEVKELASEFFPGVAPNAVLYVTGGK-PMKLMRGAADRNSYEAMVLLRAELEMLAGAAVFSGTFSSNVGRMVALMR 1116
            + AI        +++GKYIG+H+RR DKA E  PV +  Y+ K    L+       + N+  ++V+SDD+     +K    +   G    A+ +V   + P    +      + ++   L  +LE+L  A  F GT SSN+GR V   R
Sbjct:  118 LSAIAAAEQSLGLQTGKYIGVHVRRGDKASEAAPVSSMGYVWKLRELLQG------SPNLDTVFVASDDDRSLVRLKGKLGKL--GDLGRAIKFVEQPRLPDYAYKARGAHYNSKSSRFLLVDLELLVRAHTFVGTASSNLGRFVFFRR 258

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BLAST of mRNA_E-fasciculatus_F_contig1641.4338.1 vs. uniprot
Match: A0A7S3EDL2_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EDL2_9RHOD)

HSP 1 Score: 59.3 bits (142), Expect = 1.330e-5
Identity = 49/155 (31.61%), Postives = 86/155 (55.48%), Query Frame = 1

Query:  724 YIGIHIRRTDKAKEVQPVKTKAYLAKAVNYLESRTNDLAATNITGIWVSSDDEAVFDEVKELASEFFPGVAPNAVLYVTGGKPMKLMRGAAD---RNSYEAMVLLRAELEMLAGAAVFSGTFSSNVGRMVALMRRTLDKPDASAVSVDFPTWFAG 1179
            +IG+HIRR DKA EV  +  ++Y A+ V   +          IT I++++DD ++  E+++L  E+   +   A    TG     L R A +   R +  + + L AE++++  A  F GT+SSN+GR++A++R   DK   +++S+D   W +G
Sbjct:  239 FIGLHIRRGDKALEVPLIPLESY-AEIVRMCDPA--------ITKIFLATDDGSIIWELRDLLPEY--AIYTFADPQSTG----HLQRNANEDPMRRTVLSTMSLVAEIDIIRQAKYFIGTYSSNIGRLLAVLR---DKDIRTSISMDV-AWSSG 374

The following BLAST results are available for this feature:

BLAST of mRNA_E-fasciculatus_F_contig1641.4338.1 vs. uniprot

BLAST of mRNA_E-fasciculatus_F_contig1641.4338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 10


Match Name	E-value	Identity	Description
D8LU00_ECTSI	2.070e-93	89.63	Similar to putative alpha-6-fucosyltransferase n=1...	[more]
D8LU01_ECTSI	4.730e-62	43.03	GT23 domain-containing protein n=1 Tax=Ectocarpus ...	[more]
D7G435_ECTSI	1.030e-50	33.81	Alpha-(1,6)-fucosyltransferase, family GT23 n=1 Ta...	[more]
A0A6H5JTL0_9PHAE	2.290e-50	33.52	GT23 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5LR29_9PHAE	2.980e-25	36.26	GT23 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A...	[more]
R7QMX9_CHOCR	5.060e-8	32.20	Alpha-(1,6)-fucosyltransferase, family GT23 n=1 Ta...	[more]
A0A7S0BFM2_9RHOD	7.630e-7	32.50	Hypothetical protein n=1 Tax=Rhodosorus marinus Ta...	[more]
A0A1X6NXA9_PORUM	2.440e-6	30.77	Uncharacterized protein n=1 Tax=Porphyra umbilical...	[more]
A0A7S0FBN4_9DINO	4.340e-6	29.53	Hypothetical protein (Fragment) n=1 Tax=Pyrodinium...	[more]
A0A7S3EDL2_9RHOD	1.330e-5	31.61	Hypothetical protein n=2 Tax=Rhodosorus marinus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-fasciculatus_F_contig1641	contig	E-fasciculatus_F_contig1641:844..5837 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	197.2
Seed ortholog evalue	1.4e-47
Seed eggNOG ortholog	2880.D7G435
KEGG ko	ko:K00717
KEGG Reaction	R05988,R09319
KEGG Pathway	ko00510,ko00513,ko00533,ko01100,ko05202,map00510,map00513,map00533,map01100,map05202
KEGG Module	M00075
EggNOG free text desc.	glycoprotein 6-alpha-L-fucosyltransferase activity
EggNOG OGs	KOG3705@1,KOG3705@2759
Ec32 ortholog description	similar to putative alpha-6-fucosyltransferase
Ec32 ortholog	Ec-12_003680.1
EC	2.4.1.68
COG Functional cat.	M
CAZy	GT23
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko01000,ko01003
Hectar predicted targeting category	signal peptide
Exons	8
Model size	1986
Cds size	1182
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-fasciculatus_F_contig1641.4338.1	prot_E-fasciculatus_F_contig1641.4338.1	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	polypeptide	E-fasciculatus_F_contig1641 865..5054 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928110.5339735-UTR-E-fasciculatus_F_contig1641:843..864	1622928110.5339735-UTR-E-fasciculatus_F_contig1641:843..864	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	UTR	E-fasciculatus_F_contig1641 844..864 +
1695995823.5043063-UTR-E-fasciculatus_F_contig1641:843..864	1695995823.5043063-UTR-E-fasciculatus_F_contig1641:843..864	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	UTR	E-fasciculatus_F_contig1641 844..864 +
1622928110.714103-UTR-E-fasciculatus_F_contig1641:5054..5837	1622928110.714103-UTR-E-fasciculatus_F_contig1641:5054..5837	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	UTR	E-fasciculatus_F_contig1641 5055..5837 +
1695995823.6090193-UTR-E-fasciculatus_F_contig1641:5054..5837	1695995823.6090193-UTR-E-fasciculatus_F_contig1641:5054..5837	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	UTR	E-fasciculatus_F_contig1641 5055..5837 +

The following CDS feature(s) are a part of this mRNA:

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-fasciculatus_F_contig1641:844..5837+
coding sequence from alignment at E-fasciculatus_F_contig1641:844..5837+

protein sequence of mRNA_E-fasciculatus_F_contig1641.4338.1

>prot_E-fasciculatus_F_contig1641.4338.1 ID=prot_E-fasciculatus_F_contig1641.4338.1|Name=mRNA_E-fasciculatus_F_contig1641.4338.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=394bp
MVKEKASVPTVLALALGILDVLGKTFGARGGVPPIVPLVAVDIGLRQENG
TFSEEWMDKFSNDPVGCAGSAKDPYLWRPSGYGSNINNMLLVWANAILEG
RNDASVITQTGRYFSRTTCDVESNGVETRGGWHCIFAPVPHLCAFDSDKD
WTKYNNRHHVSANDMKDGGGLKEITFIRKRRTSTEQSLAALGFSMLEVMA
MLHNLLHTHVQPWFKADVEAILDKPDVAAMRSGKYIGIHIRRTDKAKEVQ
PVKTKAYLAKAVNYLESRTNDLAATNITGIWVSSDDEAVFDEVKELASEF
FPGVAPNAVLYVTGGKPMKLMRGAADRNSYEAMVLLRAELEMLAGAAVFS
GTFSSNVGRMVALMRRTLDKPDASAVSVDFPTWFAGRQRHRRE*

mRNA from alignment at E-fasciculatus_F_contig1641:844..5837+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-fasciculatus_F_contig1641.4338.1 ID=mRNA_E-fasciculatus_F_contig1641.4338.1|Name=mRNA_E-fasciculatus_F_contig1641.4338.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4994bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1641:844..5837+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGGTGGTTTGGCGTTTGATCATGGTCAAAGAAAAAGCATCGGTCCCAAC
CGTGCTAGCGCTCGCGTTGGGGATTCTGGACGTCTTGGGGAAGACCTTCG
GAGCACGAGGTAAGGTTGCGGAATGTGCTCTGTCGAAAGACGTCTTCGCC
ATCGCCAGTACGGGTGTTCTGCTAGGCGTCTGGTAGTGTGGTAGTCTCGT
CCTAAGCTGCTTTTACGGAGTTTCGATGACGATTTGCGTCTTCGACATAA
TATATGCAAGTTGAGGTCTACATATCACGCTTCTGCGTGTTACGTTGTTG
TGAGAGTGGTAGATTCGCGTTGACCATGCAAGCACTGATACTCCAAGTGT
GATCTCGTGCTGCCTTGTTGTATGGAACATGACAACGAACACAAGGGGGT
GTGCCCCCGATCGTTCCACTCGTGGCGGTAGACATTGGTCTGCGCCAAGA
AAATGGGACATTCTCTGAAGAATGGATGGACAAGTTTAGCAATGACCCAG
TTGGCTGCGCTGGTTCGGCGAAAGACCCATACCTGTGGAGGCCTTCCGGT
TACGGCAGCAATATTAACAGTGAGTCACACAAACAAATGCCAACTTAAGT
TGGTATATTTTTTCTACGGGTAAAGATCGCATACATTGTCTTAAACACCA
GGCGACAAAGCACACCACTGGCGTCACCCCTGAACCATCAGGAAGAAATG
TCTGAGGCACAGGTGGTGCTTGGAGTGAGTGAGTTGTGAGGCATTTCCCG
AGAGGCACGCAAGACACGTTCCGCTCATTTCATACATCAGCCCAGAATCA
GCAGCCGAACATTCTCGATTGTTGTGGAATGCGGGTTGTTGATCAATTCT
TACAAACCGCTACCCCATCCCTCGTGCGGCTGCAGTCGGTGACGGCAATG
TACCGCTACAGGGGCATCTACCCAACTCACAATAAGTAGGGATTCATATC
CTCATCATAGCAAGGCAACGCAGCACATCGTTTTTCACTCGCGCTCGTAC
CCCGCCACCCACAAACCCAAAATGGTGTGTTTTAGAAGAACTGGCACTCG
GTGCCCAAGTAGCGAGCCGAATTTGTCAGAAAAAAGTACTCAAAACTTTG
CCCTTCCTCACAACGTGCTTTGGCAGATATGCTTCTCGTCTGGGCAAATG
CAATTTTGGAGGGGCGCAATGATGCCTCTGTCATCACCCAGACGGGCAGA
TATTTCTCTCGAACGACGTGCGACGTTGAAAGCAACGGAGTAGAAACACG
TGGAGGCTGGCATTGCATCTTTGCTCCGGTACCCCACCTGTGCGCCTTTG
ACAGTGACAAGGTCCGCCTCCGTTGGTATTCCTAGTCTTGATGTCTTTCA
ACAACCTACGAGTGGCACGGGCTCCCTGTTCTCAAAGTACGCATGCCCTC
CGTTCGACGCTATGAAGGACGCGTTGGCAGCGACGCACCATTGTCTAGAT
TTTGTGCTACGAGTGCGTCGGAGTAGTTCCGAACAGCTTTTCCACGGCAC
GCGGACGTTATTGGCTGTTTACCTCCCGTTTTGGCGTACCACCGAGTGAG
TGAGGACCCTGCTCTTCTAGTACCTAGCTAAACGCTTCTATCACCATCCT
CGCCGGTTCAACTTTACAGGACTGGACCAAGTACAACAATCGGCATCATG
TATCCGCCAACGACATGAAAGACGGCGGGGGGTTAAAGGAGATAACCTTC
ATCCGTAAACGTCGTACTTCGACCGAACAGTCCCTCGCAGCGCTGGGCTT
CAGCATGCTGGAGGTTATGGCGGTGAGTTGGTTATGGTGGCACTTGGTTT
GGTGGAGTAATAGGAAATTCCTCCGGGAGGACTGCTTCTGGTATGCCGCA
GATTGGTAGGCGATGATGTGAATGGGCGAATCCTGCCCTTCCGTGTCTGT
GCTAGTACTCTTTTCTGTTGTAGACGCGTGCAACTCCTTTTCAGGCGTTT
GCTCTCCGGCTGGGTCCAGATTTGGATTCTGTGAATCACATGCCGCTGCT
CCGTGTCTTTTTGCATTGGACAGATGCTACATAATTTGCTACATACACAT
GTTCAGCCATGGTTCAAGGCCGATGTTGAAGCTATTCTTGACAAACCCGA
TGTCGCCGCAATGAGGAGCGGAAAGTACATCGGCATACATATCCGCCGAA
CCGACAAGGCGAAAGAAGTACAGCCCGTCAAGACCAAGGTGCAGTGCATA
ACGGTGCATTGCAAGGGGGCCCATACTGAAGCGTTGTTGTATTTGTTTAG
CGGGCGCGTTCGGGCTGGCAGAGCGTCATCGACCCATCGGCCGGTAGCCC
CCCGCTCTGTAGCAACACGCTAGGCTTCCACCCCCACCGGTACTGGTCAA
GTAAGTACCAGAGCTTCTGTTTCACCCGACAGGCATACTTGGCGAAGGCT
GTCAACTATCTTGAATCGCGGACGAACGACTTGGCAGCTACAAATATCAC
AGGAATATGGGTATCTTCAGATGACGAAGCTGTGTTCGACGAGGTGCGTG
TCTTATTCAAGCGTTGTCGCTTGATTGAATCACCAGTAGGCCATTGCGAC
GCTGTGTCGTCACCCGGAGTTCCACCGCTCGAAACTTGACGGATTCCAGG
AAGTTGTCCATCCTTGAAATCGTGAGTGTTGAGAGGGTTCTAAACCGCCG
TGTGTCGTGCAAGGCTTCCCGCCTACCGATTTCTACATTGTTCTCACCGA
TTACTTTGAGCCATGTGCACATAAGGCGGTTGTTGCCGGGTGAACGCTAC
CTGCTTAAGGTGCTACACCAACACAACTTTCCATGTGTTCGAGGGTCTTA
GATTGGCCGTTTTTCTTCAATGTATTTCGGCGGAAGTCTTCACAAGGTAC
CCTCTCCGTACGCTGCGCAAGGGGTACGATCGCCCCCCCTGGCACATCAA
TACTTTCCTCGAAACTGTTCGTCTCCGTATCCAAAGCAAACTTCCCAACA
TTCTCCCGGCCACACGATTCTGATACTCCCGCTGCGGTCACACCGACACA
TCGCTCGAACTGCGTACACCATCAAATATGTATCCATATCTATCCAAGCT
CACCCTAAGTCGTGTAGAATCCAGTCCTCAACTGTTTCAGCGACGTATTC
ACCTACCGGTCGAAAACATCGGCGGTTCAATATAGGGTGATCGTTCTCTG
CTCCCCGCGAAGCCCTTGAGGTCTTGGGGATAATTGTAGCAATGGCCATA
TACTCGTCCATGCGCGCCTACCGCCACTTCAAACGACTGGTCGGTGGAAA
CGTCGAAGGGTATCGTCCACTAACTTGGTCGCTGTCGGTGGCAGTGTATT
TGTTTGTCGCTCATGGGCGTCCGTGGGCGGCCATAGACACGTCAGCAAAT
ACTTCCGCAGACGCCCGTGGGGGCGTCCGACAGACTCACAGACGAACACG
AAAATGAATTTCCTTGCATCGTGGTTGCGGTGGCCCCCGAACTACTTCTC
AGATGCTTGATCGACCAAATTGGACGGTTCATCCGGCCAGGAGGCATCAA
CTCGATATGTAAAGAGTTGACGGTGATTCAGCAAGATTAATCCATCTCAC
GCAACACCGTTGACCACTGCAACCAGAAAATATATTTTCTGAAACAAAAA
AGAGCCCCTGTAGCATCTTGGTCTCCAAACCTATGGGTACGGTCTCCACG
TTCGTGCTCAACAGTCGCTGCTGCTTGCGGGCAATTGATATTGCAAGGCG
ATATCCTGTCCAGACCCACCACGTGACAACATCATGTGCGATAATCAGGT
TAAGGAGCTGGCCTCGGAGTTCTTCCCGGGCGTTGCCCCGAACGCGGTGC
TGTATGTCACAGGGGGGAAGCCTATGAAGCTCATGCGGGGTGCAGCTGAT
CGCAACGTAAGAGAGAGGGTTGTGCAAAAAAGAGTATTTCAGCTCCGTCA
ATCCATCAAGCCAGTTTTAGCGACCTCTCCGGTAACGCTATGACCTTCGC
TCGTTGTGCATCTCCATTAGTTGTCGCTTACCCAAAATGTTCTCCTGACG
TAACCTCCCGCAGTCGTACGAGGCCATGGTTTTGCTCAGGGCGGAGCTGG
AAATGTTGGCTGGAGCCGCCGTATTTTCGGGCACGTTCTCTTCCAATGTT
GGCCGAATGGTGGCTCTGATGCGTAGAACACTCGACAAGCCTGACGCGTC
TGCTGTGAGCGTAGATTTTCCGACTTGGTTTGCCGGGCGGCAGCGTCATC
GCCGCGAGTAGAGAGTCCGACGAATATTGAATCCTCAGTATCTTCAAGTG
CACAGGCACATTTGGAAACTGAAGGACGTAGGGGGAAGAGAAAAAGTTGC
TTGAAAAAGGCACCCAGTCTACTTGAAACGAGCAGAGTGGGTGCCAAGAC
CATACACCGAGCGATGGGAGTGCGCAATCCGTGTGATGGTCACTGCTCCC
GCTGTCACGCAATTGCGCTATGCAGAAAGTGCGAGGTGCTAACATAATAC
TATTCCGTCACGTGACCACAAACCTTCGCGGGGGCGATGCAGATGGAGAC
TGTGCGGATACGATAAGACGTGGTGTATTGCTAATTGAATAGTTGGAGAA
ATGTCCTGGTGCTATTGTCATCTGCAGGTTGAACCAAGTCAGTGTCAACA
AACACCCCAGTATTGGCCCAGCGAAGACGGAGGATATGCGCTATTTGGTC
GGAAATACTTTTTGGGGTAGATTCCCCCAATTTCGGTCAAATCCGACTGG
AAACCGACTACATGCCGTAGGCAAGAACTTGTAGGTAGCAGTCACAGGAG
AGGGTTGCTTCGTATTCATCCAATGACCGATGCAAAACTCTCGGTTGTGT
CGTGTGGGTACGTAAGTATTCGTCAGGAAACGCATCGCCATGTTTGCAGA
GTAACCGCAATGTTGACGGAGTTTCAGTTCTGTGAGTTAGACTGACTGGT
ATCGCGCTGTTCACGAAGCTTCCCTAGACCTGGTCTGTATATTTTCTTCT
TGATGGTGCTATTGGCGTATTGTGTGGGCTTTTGGTAGCACAAC

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1641:844..5837+

>mRNA_E-fasciculatus_F_contig1641.4338.1 ID=mRNA_E-fasciculatus_F_contig1641.4338.1|Name=mRNA_E-fasciculatus_F_contig1641.4338.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2364bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1641:844..5837+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTCAAAGAAAAAGCATCGGTCCCAACCGTGCTAGCGCTCGCGTTGGG
GATTCTGGACGTCTTGGGGAAGACCTTCGGAGCACGAGATGGTCAAAGAA
AAAGCATCGGTCCCAACCGTGCTAGCGCTCGCGTTGGGGATTCTGGACGT
CTTGGGGAAGACCTTCGGAGCACGAGGGGGTGTGCCCCCGATCGTTCCAC
TCGTGGCGGTAGACATTGGTCTGCGCCAAGAAAATGGGACATTCTCTGAA
GAATGGATGGACAAGTTTAGCAATGACCCAGTTGGCTGCGCTGGTTCGGC
GAAAGACCCATACCTGTGGAGGCCTTCCGGTTACGGCAGCAATATTAACA
GGGGTGTGCCCCCGATCGTTCCACTCGTGGCGGTAGACATTGGTCTGCGC
CAAGAAAATGGGACATTCTCTGAAGAATGGATGGACAAGTTTAGCAATGA
CCCAGTTGGCTGCGCTGGTTCGGCGAAAGACCCATACCTGTGGAGGCCTT
CCGGTTACGGCAGCAATATTAACAATATGCTTCTCGTCTGGGCAAATGCA
ATTTTGGAGGGGCGCAATGATGCCTCTGTCATCACCCAGACGGGCAGATA
TTTCTCTCGAACGACGTGCGACGTTGAAAGCAACGGAGTAGAAACACGTG
GAGGCTGGCATTGCATCTTTGCTCCGGTACCCCACCTGTGCGCCTTTGAC
AGTGACAAGATATGCTTCTCGTCTGGGCAAATGCAATTTTGGAGGGGCGC
AATGATGCCTCTGTCATCACCCAGACGGGCAGATATTTCTCTCGAACGAC
GTGCGACGTTGAAAGCAACGGAGTAGAAACACGTGGAGGCTGGCATTGCA
TCTTTGCTCCGGTACCCCACCTGTGCGCCTTTGACAGTGACAAGGACTGG
ACCAAGTACAACAATCGGCATCATGTATCCGCCAACGACATGAAAGACGG
CGGGGGGTTAAAGGAGATAACCTTCATCCGTAAACGTCGTACTTCGACCG
AACAGTCCCTCGCAGCGCTGGGCTTCAGCATGCTGGAGGTTATGGCGGAC
TGGACCAAGTACAACAATCGGCATCATGTATCCGCCAACGACATGAAAGA
CGGCGGGGGGTTAAAGGAGATAACCTTCATCCGTAAACGTCGTACTTCGA
CCGAACAGTCCCTCGCAGCGCTGGGCTTCAGCATGCTGGAGGTTATGGCG
ATGCTACATAATTTGCTACATACACATGTTCAGCCATGGTTCAAGGCCGA
TGTTGAAGCTATTCTTGACAAACCCGATGTCGCCGCAATGAGGAGCGGAA
AGTACATCGGCATACATATCCGCCGAACCGACAAGGCGAAAGAAGTACAG
CCCGTCAAGACCAAGATGCTACATAATTTGCTACATACACATGTTCAGCC
ATGGTTCAAGGCCGATGTTGAAGCTATTCTTGACAAACCCGATGTCGCCG
CAATGAGGAGCGGAAAGTACATCGGCATACATATCCGCCGAACCGACAAG
GCGAAAGAAGTACAGCCCGTCAAGACCAAGGCATACTTGGCGAAGGCTGT
CAACTATCTTGAATCGCGGACGAACGACTTGGCAGCTACAAATATCACAG
GAATATGGGTATCTTCAGATGACGAAGCTGTGTTCGACGAGGCATACTTG
GCGAAGGCTGTCAACTATCTTGAATCGCGGACGAACGACTTGGCAGCTAC
AAATATCACAGGAATATGGGTATCTTCAGATGACGAAGCTGTGTTCGACG
AGGTTAAGGAGCTGGCCTCGGAGTTCTTCCCGGGCGTTGCCCCGAACGCG
GTGCTGTATGTCACAGGGGGGAAGCCTATGAAGCTCATGCGGGGTGCAGC
TGATCGCAACGTTAAGGAGCTGGCCTCGGAGTTCTTCCCGGGCGTTGCCC
CGAACGCGGTGCTGTATGTCACAGGGGGGAAGCCTATGAAGCTCATGCGG
GGTGCAGCTGATCGCAACTCGTACGAGGCCATGGTTTTGCTCAGGGCGGA
GCTGGAAATGTTGGCTGGAGCCGCCGTATTTTCGGGCACGTTCTCTTCCA
ATGTTGGCCGAATGGTGGCTCTGATGCGTAGAACACTCGACAAGCCTGAC
GCGTCTGCTGTGAGCGTAGATTTTCCGACTTGGTTTGCCGGGCGGCAGCG
TCATCGCCGCGAGTAGTCGTACGAGGCCATGGTTTTGCTCAGGGCGGAGC
TGGAAATGTTGGCTGGAGCCGCCGTATTTTCGGGCACGTTCTCTTCCAAT
GTTGGCCGAATGGTGGCTCTGATGCGTAGAACACTCGACAAGCCTGACGC
GTCTGCTGTGAGCGTAGATTTTCCGACTTGGTTTGCCGGGCGGCAGCGTC
ATCGCCGCGAGTAG