mRNA_E-fasciculatus_F_contig16404.4337.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16404.4337.1
Unique NamemRNA_E-fasciculatus_F_contig16404.4337.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16404.4337.1 vs. uniprot
Match: D7FMG8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMG8_ECTSI)

HSP 1 Score: 243 bits (620), Expect = 9.170e-77
Identity = 112/131 (85.50%), Postives = 117/131 (89.31%), Query Frame = 3 
Query:  339 RRNIEHAAKPTIPGRHIWAWCQETPCPFQRNTGFRRNEFDEFYTAQGGDEGHLFRVPRDIDGQFTPAENSARRRIKGTLRYRDRVLCWIMMLRRGCCFHEMTTLFGPGESTFCRDFLWMMIQAATLPCLVD 731
            RRN+++      P     AWCQET CPFQRNTGFRRNEFD+FYTAQGGDEGHLFRVPRDIDGQFTPAENSARR IKGTLRYRDRVLCW+MMLRRGCCFHEMTTLFGPGESTFCRDFLWM IQAATLPCLVD
Sbjct:  120 RRNLKY------PDGIYEAWCQETTCPFQRNTGFRRNEFDDFYTAQGGDEGHLFRVPRDIDGQFTPAENSARRTIKGTLRYRDRVLCWLMMLRRGCCFHEMTTLFGPGESTFCRDFLWMTIQAATLPCLVD 244
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BLAST of mRNA_E-fasciculatus_F_contig16404.4337.1 vs. uniprot
Match: A0A6H5K1A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1A5_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 8.360e-18
Identity = 40/64 (62.50%), Postives = 47/64 (73.44%), Query Frame = 3 
Query:  540 ENSARRRIKGTLRYRDRVLCWIMMLRRGCCFHEMTTLFGPGESTFCRDFLWMMIQAATLPCLVD 731
            EN ARRRI+GT+ YRDR LCW+MMLR+  CFH M  L+GP  +TF RDF+WM  QA TL  L D
Sbjct:  167 ENMARRRIRGTMGYRDRALCWLMMLRQDFCFHTMEDLWGPSAATFQRDFVWMTTQATTLELLND 230
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BLAST of mRNA_E-fasciculatus_F_contig16404.4337.1 vs. uniprot
Match: A0A6H5KWG0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWG0_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 5.390e-12
Identity = 51/160 (31.87%), Postives = 73/160 (45.62%), Query Frame = 3 
Query:  327 ERGKRRNIEHAAKPTIPGRHIWAWCQETPCPFQ------------------RNTGFRRNEFDEFYTAQGGD-EGH------LFRVPRDIDGQFTPAENSARRRIKGTLRYRDRVLCWIMMLRRGCCFHEMTTLFGPGESTFCRDFLWMMIQAATLPCLVD 731
            E   RR +  A + T+P  H+        CPF+                    TG  ++EFD FY     D EG+      LF   R+  G ++  +N ARR I+G++  RDRVLCW+ MLRR  CF +M   +G    T+  +F      A  +PCL +
Sbjct:   63 EEDMRRGVT-APRTTLPVAHV--------CPFRFPSEEGGIYDAHSSSQIRYKTGMEKDEFDAFYEDTFLDAEGNRLARSWLFGQARNHLGNYSAEDNKARRVIRGSMDDRDRVLCWLEMLRRDTCFEDMALAYGRCAGTYHNEFKDTTAAAQNMPCLQE 213
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BLAST of mRNA_E-fasciculatus_F_contig16404.4337.1 vs. uniprot
Match: A0A6H5KI20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI20_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 3.250e-10
Identity = 40/107 (37.38%), Postives = 57/107 (53.27%), Query Frame = 3 
Query:  432 TGFRRNEFDEFYTAQGGD-EGH------LFRVPRDIDGQFTPAENSARRRIKGTLRYRDRVLCWIMMLRRGCCFHEMTTLFGPGESTFCRDFLWMMIQAATLPCLVD 731
            TG  ++EFD FY     D EG+      LF   R+  G ++  +N ARR I+G++  RDRVLCW+ MLRR   F +M   +G    T+  +F      A  +PCL +
Sbjct:  111 TGMEKDEFDAFYEDTFLDAEGNRLARSCLFGQARNHVGNYSAEDNKARRVIRGSMDDRDRVLCWLEMLRRDTLFEDMALAYGRCAGTYHNEFKDTTAAAQNMPCLQE 217
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BLAST of mRNA_E-fasciculatus_F_contig16404.4337.1 vs. uniprot
Match: A0A6H5KLU9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLU9_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 7.890e-10
Identity = 38/103 (36.89%), Postives = 56/103 (54.37%), Query Frame = 3 
Query:  444 RNEFDEFYTAQGGD-EGH------LFRVPRDIDGQFTPAENSARRRIKGTLRYRDRVLCWIMMLRRGCCFHEMTTLFGPGESTFCRDFLWMMIQAATLPCLVD 731
            ++EFD+FY     D EG+      LF   R+  G ++  +N ARR I+G++  RDRVLCW+ MLRR   F +M   +G    T+  +F      A  +PCL +
Sbjct:    3 KDEFDDFYEDMFLDAEGNRLARSWLFGQARNHLGNYSAEDNKARRVIRGSIDDRDRVLCWLEMLRRDTLFEDMALAYGRCAGTYHNEFKDTTAAAQNMPCLQE 105
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BLAST of mRNA_E-fasciculatus_F_contig16404.4337.1 vs. uniprot
Match: A0A6H5JZF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZF6_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 4.750e-5
Identity = 25/61 (40.98%), Postives = 36/61 (59.02%), Query Frame = 3 
Query:  543 NSARRRIKGTLRYRDRVLCWIMMLRRGCCFHEMTTLFGPGESTFCRDFLWMMIQAATLPCL 725
            N ARR I+G++  RDRVLCW+ +LRR   F ++   +G    T+  +F  M   A  +PCL
Sbjct:  147 NKARRVIRGSMDDRDRVLCWLEILRRDTLFEDVALAYGRCAGTYHNEFKDMTAAAQNMPCL 207
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16404.4337.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FMG8_ECTSI9.170e-7785.50Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5K1A5_9PHAE8.360e-1862.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KWG0_9PHAE5.390e-1231.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KI20_9PHAE3.250e-1037.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLU9_9PHAE7.890e-1036.89Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZF6_9PHAE4.750e-540.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16404contigE-fasciculatus_F_contig16404:1519..2249 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size731
Cds size609
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928110.3258324-CDS-E-fasciculatus_F_contig16404:1518..21271622928110.3258324-CDS-E-fasciculatus_F_contig16404:1518..2127Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16404 1519..2127 +
1695995823.4135504-CDS-E-fasciculatus_F_contig16404:1518..21271695995823.4135504-CDS-E-fasciculatus_F_contig16404:1518..2127Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16404 1519..2127 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928110.3401453-UTR-E-fasciculatus_F_contig16404:2127..22491622928110.3401453-UTR-E-fasciculatus_F_contig16404:2127..2249Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16404 2128..2249 +
1695995823.4231715-UTR-E-fasciculatus_F_contig16404:2127..22491695995823.4231715-UTR-E-fasciculatus_F_contig16404:2127..2249Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16404 2128..2249 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16404.4337.1prot_E-fasciculatus_F_contig16404.4337.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16404 1519..2127 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16404.4337.1

>prot_E-fasciculatus_F_contig16404.4337.1 ID=prot_E-fasciculatus_F_contig16404.4337.1|Name=mRNA_E-fasciculatus_F_contig16404.4337.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=203bp
MDGHESDSGDEEQRREAMCVAASLLIVDSATQTEQEEAEFENLHKRLESD
AMLAAETAVEGHGESDDLFGIGSPFGMARYGVEERIRGSLMGTCVREAGK
LLPGPGRGRSEANAATSNMRRNLRYPDGIYGRGARRLRALSNATRDSGAT
SSTNSTQRRAETKGISSEFQGTSTGSSRQLRTVRDVGSRERSATATGSCV
GS*
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mRNA from alignment at E-fasciculatus_F_contig16404:1519..2249+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16404.4337.1 ID=mRNA_E-fasciculatus_F_contig16404.4337.1|Name=mRNA_E-fasciculatus_F_contig16404.4337.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=731bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16404:1519..2249+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGATGGCCATGAAAGCGACAGTGGTGATGAGGAGCAGCGCCGTGAGGC
GATGTGTGTTGCAGCGTCACTGCTGATCGTCGACAGTGCCACCCAGACTG
AGCAGGAAGAGGCCGAGTTCGAGAATTTGCATAAGAGACTCGAGAGCGAC
GCCATGCTTGCAGCGGAGACCGCGGTGGAAGGCCACGGTGAGAGCGATGA
CCTCTTCGGGATAGGGTCCCCTTTCGGCATGGCGAGGTACGGGGTAGAAG
AGAGGATCAGGGGTTCGTTGATGGGCACCTGTGTGAGAGAGGCGGGGAAG
TTGTTGCCTGGACCCGGGCGTGGACGGAGCGAGGCAAACGCCGCAACATC
GAACATGCGGCGAAACCTACGATACCCGGACGGCATATATGGGCGTGGTG
CCAGGAGACTCCGTGCCCTTTCCAACGCAACACGGGATTCAGGCGCAACG
AGTTCGACGAATTCTACACAGCGCAGGGCGGAGACGAAGGGCATCTCTTC
AGAGTTCCAAGGGACATCGACGGGCAGTTCACGCCAGCTGAGAACAGTGC
GCGACGTAGGATCAAGGGAACGCTCCGCTACCGCGACCGGGTCCTGTGTT
GGATCATGATGCTTCGCAGGGGGTGTTGCTTCCACGAGATGACGACCTTG
TTCGGGCCTGGCGAGTCGACCTTCTGCCGAGACTTTCTGTGGATGATGAT
CCAGGCCGCAACTCTTCCTTGCCTGGTTGAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16404:1519..2249+

>mRNA_E-fasciculatus_F_contig16404.4337.1 ID=mRNA_E-fasciculatus_F_contig16404.4337.1|Name=mRNA_E-fasciculatus_F_contig16404.4337.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1218bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16404:1519..2249+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGATGGCCATGAAAGCGACAGTGGTGATGAGGAGCAGCGCCGTGAGGC
GATGTGTGTTGCAGCGTCACTGCTGATCGTCGACAGTGCCACCCAGACTG
AGCAGGAAGAGGCCGAGTTCGAGAATTTGCATAAGAGACTCGAGAGCGAC
GCCATGCTTGCAGCGGAGACCGCGGTGGAAGGCCACGGTGAGAGCGATGA
CCTCTTCGGGATAGGGTCCCCTTTCGGCATGGCGAGGTACGGGGTAGAAG
AGAGGATCAGGGGTTCGTTGATGGGCACCTGTGTGAGAGAGGCGGGGAAG
TTGTTGCCTGGACCCGGGCGTGGACGGAGCGAGGCAAACGCCGCAACATC
GAACATGCGGCGAAACCTACGATACCCGGACGGCATATATGGGCGTGGTG
CCAGGAGACTCCGTGCCCTTTCCAACGCAACACGGGATTCAGGCGCAACG
AGTTCGACGAATTCTACACAGCGCAGGGCGGAGACGAAGGGCATCTCTTC
AGAGTTCCAAGGGACATCGACGGGCAGTTCACGCCAGCTGAGAACAGTGC
GCGACGTAGGATCAAGGGAACGCTCCGCTACCGCGACCGGGTCCTGTGTT
GGATCATGAATGGATGGCCATGAAAGCGACAGTGGTGATGAGGAGCAGCG
CCGTGAGGCGATGTGTGTTGCAGCGTCACTGCTGATCGTCGACAGTGCCA
CCCAGACTGAGCAGGAAGAGGCCGAGTTCGAGAATTTGCATAAGAGACTC
GAGAGCGACGCCATGCTTGCAGCGGAGACCGCGGTGGAAGGCCACGGTGA
GAGCGATGACCTCTTCGGGATAGGGTCCCCTTTCGGCATGGCGAGGTACG
GGGTAGAAGAGAGGATCAGGGGTTCGTTGATGGGCACCTGTGTGAGAGAG
GCGGGGAAGTTGTTGCCTGGACCCGGGCGTGGACGGAGCGAGGCAAACGC
CGCAACATCGAACATGCGGCGAAACCTACGATACCCGGACGGCATATATG
GGCGTGGTGCCAGGAGACTCCGTGCCCTTTCCAACGCAACACGGGATTCA
GGCGCAACGAGTTCGACGAATTCTACACAGCGCAGGGCGGAGACGAAGGG
CATCTCTTCAGAGTTCCAAGGGACATCGACGGGCAGTTCACGCCAGCTGA
GAACAGTGCGCGACGTAGGATCAAGGGAACGCTCCGCTACCGCGACCGGG
TCCTGTGTTGGATCATGA
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