mRNA_E-fasciculatus_F_contig16403.4336.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16403.4336.1
Unique NamemRNA_E-fasciculatus_F_contig16403.4336.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16403.4336.1 vs. uniprot
Match: D8LMK6_ECTSI (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMK6_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 1.010e-14
Identity = 35/49 (71.43%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:   13 VGSADRQQNSTDYGVFAVSFASCLSDDLPFDFQQADIGHMRRRMLWSIL 159
            V S  +Q+N +D G FAVSFAS LSDDLPFDF+QADI  MRRRMLWS+L
Sbjct:  526 VASTPQQENGSDCGAFAVSFASYLSDDLPFDFRQADISQMRRRMLWSLL 574
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16403.4336.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMK6_ECTSI1.010e-1471.43ULP_PROTEASE domain-containing protein n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16403contigE-fasciculatus_F_contig16403:516..680 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.9
Seed ortholog evalue6.7e-12
Seed eggNOG ortholog2880.D8LMK6
KEGG koko:K08592
EggNOG free text desc.protein modification by small protein removal
EggNOG OGsCOG5160@1,KOG0778@2759
EC3.4.22.68
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size165
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928110.277373-CDS-E-fasciculatus_F_contig16403:515..6801622928110.277373-CDS-E-fasciculatus_F_contig16403:515..680Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16403 516..680 -
1695995823.4008315-CDS-E-fasciculatus_F_contig16403:515..6801695995823.4008315-CDS-E-fasciculatus_F_contig16403:515..680Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16403 516..680 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16403.4336.1prot_E-fasciculatus_F_contig16403.4336.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16403 516..680 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16403.4336.1

>prot_E-fasciculatus_F_contig16403.4336.1 ID=prot_E-fasciculatus_F_contig16403.4336.1|Name=mRNA_E-fasciculatus_F_contig16403.4336.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=55bp
MVFHVGSADRQQNSTDYGVFAVSFASCLSDDLPFDFQQADIGHMRRRMLW
SILQ*
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mRNA from alignment at E-fasciculatus_F_contig16403:516..680-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16403.4336.1 ID=mRNA_E-fasciculatus_F_contig16403.4336.1|Name=mRNA_E-fasciculatus_F_contig16403.4336.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=165bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16403:516..680- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTGTTTCATGTCGGATCGGCCGATCGGCAGCAGAACAGCACCGACTA
CGGTGTGTTCGCGGTGTCGTTCGCGTCCTGCCTGAGCGACGACCTTCCCT
TCGACTTCCAACAGGCAGATATCGGGCATATGCGCAGGCGGATGCTATGG
TCGATCCTACAATAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16403:516..680-

>mRNA_E-fasciculatus_F_contig16403.4336.1 ID=mRNA_E-fasciculatus_F_contig16403.4336.1|Name=mRNA_E-fasciculatus_F_contig16403.4336.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=330bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16403:516..680- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTGTTTCATGTCGGATCGGCCGATCGGCAGCAGAACAGCACCGACTA
CGGTGTGTTCGCGGTGTCGTTCGCGTCCTGCCTGAGCGACGACCTTCCCT
TCGACTTCCAACAGGCAGATATCGGGCATATGCGCAGGCGGATGCTATGG
TCGATCCTACAATAGATGGTGTTTCATGTCGGATCGGCCGATCGGCAGCA
GAACAGCACCGACTACGGTGTGTTCGCGGTGTCGTTCGCGTCCTGCCTGA
GCGACGACCTTCCCTTCGACTTCCAACAGGCAGATATCGGGCATATGCGC
AGGCGGATGCTATGGTCGATCCTACAATAG
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