mRNA_E-fasciculatus_F_contig16402.4335.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16402.4335.1
Unique NamemRNA_E-fasciculatus_F_contig16402.4335.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16402.4335.1 vs. uniprot
Match: D8LMK5_ECTSI (Similar to tripeptidylpeptidase II n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMK5_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 1.050e-26
Identity = 52/61 (85.25%), Postives = 55/61 (90.16%), Query Frame = 1 
Query:    7 VVGLRQRTLRLNPKWTNPSGDWRVGIKRAYELFPKLLVTRVKAERRKDWDKKHLAAEVSPA 189
            + GL  RTLRLNPKWTNPSG+WRVGIKRAY LFPKLLVTRVKAERRKDWDKKHLAAE + A
Sbjct:  103 IKGLSGRTLRLNPKWTNPSGEWRVGIKRAYGLFPKLLVTRVKAERRKDWDKKHLAAEAAVA 163
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BLAST of mRNA_E-fasciculatus_F_contig16402.4335.1 vs. uniprot
Match: D8R7G9_SELML (Tripeptidyl-peptidase II n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8R7G9_SELML)

HSP 1 Score: 81.3 bits (199), Expect = 2.000e-16
Identity = 38/65 (58.46%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:    1 GAVVGLRQRTLRLNPKWTNPSGDWRVGIKRAYELFPKLLVTRVKAERRKDWDKKHLAAEVSPAVR 195
            G ++G    TLRLN  W NPSGDWRVG K  YELFP+ L TR+K ERRK WDK H  A ++ A+R
Sbjct:  102 GCIIGASGATLRLNESWVNPSGDWRVGCKFVYELFPERLSTRLKRERRKHWDKNHREA-ITDAIR 165
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BLAST of mRNA_E-fasciculatus_F_contig16402.4335.1 vs. uniprot
Match: A0A7R9V402_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9V402_9CHLO)

HSP 1 Score: 76.6 bits (187), Expect = 4.290e-15
Identity = 32/64 (50.00%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:    1 GAVVGLRQRTLRLNPKWTNPSGDWRVGIKRAYELFPKLLVTRVKAERRKDWDKKHLAAEVSPAV 192
            G +V    R+L+LNP W NP+GDW VG K  Y+LF + LVTR++ ERR+ WD++H AA  + A 
Sbjct:  193 GCIVSPSGRSLKLNPAWKNPTGDWHVGCKHVYQLFSRTLVTRMREERRRQWDERHRAAGAAAAA 256
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BLAST of mRNA_E-fasciculatus_F_contig16402.4335.1 vs. uniprot
Match: A0A7S2HF30_9STRA (Subtilisin (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HF30_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 5.390e-15
Identity = 34/58 (58.62%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:    7 VVGLRQRTLRLNPKWTNPSGDWRVGIKRAYELFPKLLVTRVKAERRKDWDKKHLAAEV 180
            +  L  R LRLN  W NPSG+WR+G+KRAYE +PK LVTRVK ER+K W  K   AE+
Sbjct:   62 ITALSGRVLRLNGAWDNPSGEWRLGLKRAYEFYPKPLVTRVKNERKKAWLSKQHTAEL 119
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BLAST of mRNA_E-fasciculatus_F_contig16402.4335.1 vs. uniprot
Match: A0A2D5WGI2_9BACT (Tripeptidyl-peptidase II n=7 Tax=Verrucomicrobia TaxID=74201 RepID=A0A2D5WGI2_9BACT)

HSP 1 Score: 77.0 bits (188), Expect = 6.180e-15
Identity = 34/53 (64.15%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    1 GAVVGLRQRTLRLNPKWTNPSGDWRVGIKRAYELFPKLLVTRVKAERRKDWDK 159
            G + GL  RTLRL   W NPSG WR+GIK AYELFP  LV+R+K ER+K+WDK
Sbjct:  117 GTLTGLTGRTLRLGDDWKNPSGKWRLGIKAAYELFPASLVSRLKTERKKEWDK 169
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BLAST of mRNA_E-fasciculatus_F_contig16402.4335.1 vs. uniprot
Match: A0A382GR40_9ZZZZ (Peptidase_S8 domain-containing protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382GR40_9ZZZZ)

HSP 1 Score: 74.3 bits (181), Expect = 4.810e-14
Identity = 33/53 (62.26%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    1 GAVVGLRQRTLRLNPKWTNPSGDWRVGIKRAYELFPKLLVTRVKAERRKDWDK 159
            G + GL  RTL+L   W NP G WRVGIK AYELFP  LV+R+K ER+K+WDK
Sbjct:  107 GTLTGLTGRTLKLGGDWQNPGGKWRVGIKAAYELFPGSLVSRLKRERKKEWDK 159
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BLAST of mRNA_E-fasciculatus_F_contig16402.4335.1 vs. uniprot
Match: A0A2E0PE30_9BACT (Tripeptidyl-peptidase II n=2 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2E0PE30_9BACT)

HSP 1 Score: 73.6 bits (179), Expect = 1.020e-13
Identity = 31/53 (58.49%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:    4 AVVGLRQRTLRLNPKWTNPSGDWRVGIKRAYELFPKLLVTRVKAERRKDWDKK 162
            +++GL  RTL+L   W N +G WR+GIK AYELFP  LV+R+K+ER+K+WDKK
Sbjct:  104 SLIGLTGRTLKLGSDWDNKNGKWRLGIKAAYELFPSALVSRLKSERKKEWDKK 156
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BLAST of mRNA_E-fasciculatus_F_contig16402.4335.1 vs. uniprot
Match: A0A2P6TIJ6_CHLSO (Tripeptidyl-peptidase II n=2 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TIJ6_CHLSO)

HSP 1 Score: 73.6 bits (179), Expect = 1.030e-13
Identity = 36/64 (56.25%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:    1 GAVVGLRQRTLRLNPKWTNPSGDWRVGIKRAYELFPKLLVTRVKAERRKDWDKKHLAAEVSPAV 192
            G + GL    LRLNP WTNPSG+WRVG K AYELFP  L +R++ ER+K W +K   A V+ AV
Sbjct:  190 GCITGLNGNKLRLNPAWTNPSGEWRVGAKAAYELFPAGLKSRLQKERKKRWAEKQRTA-VAQAV 252
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BLAST of mRNA_E-fasciculatus_F_contig16402.4335.1 vs. uniprot
Match: A0A2E6T218_9BACT (Tripeptidyl-peptidase II n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2E6T218_9BACT)

HSP 1 Score: 73.2 bits (178), Expect = 1.400e-13
Identity = 33/53 (62.26%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    1 GAVVGLRQRTLRLNPKWTNPSGDWRVGIKRAYELFPKLLVTRVKAERRKDWDK 159
            G + GL  RTL+    W NPSG WR+GIK AYELFP  LV+R+K+ER+KDWDK
Sbjct:  108 GILTGLTGRTLKPVNDWKNPSGKWRLGIKAAYELFPASLVSRLKSERKKDWDK 160
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BLAST of mRNA_E-fasciculatus_F_contig16402.4335.1 vs. uniprot
Match: A0A1X2IXE8_9FUNG (Tripeptidyl-peptidase II n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2IXE8_9FUNG)

HSP 1 Score: 72.8 bits (177), Expect = 1.910e-13
Identity = 34/59 (57.63%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:    7 VVGLRQRTLRLNPKWTNPSGDWRVGIKRAYELFPKLLVTRVKAERRKDWDKK--HLAAE 177
            + GL  RTL L+PKW NPSGD+R+G+KRAYELFP  L++R+K+ERR++++ K  HL  E
Sbjct:  105 IEGLSGRTLILDPKWKNPSGDYRIGLKRAYELFPSELISRLKSERRQNFEVKQAHLIGE 163
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16402.4335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMK5_ECTSI1.050e-2685.25Similar to tripeptidylpeptidase II n=2 Tax=Ectocar... [more]
D8R7G9_SELML2.000e-1658.46Tripeptidyl-peptidase II n=4 Tax=Selaginella moell... [more]
A0A7R9V402_9CHLO4.290e-1550.00Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A7S2HF30_9STRA5.390e-1558.62Subtilisin (Fragment) n=1 Tax=Dictyocha speculum T... [more]
A0A2D5WGI2_9BACT6.180e-1564.15Tripeptidyl-peptidase II n=7 Tax=Verrucomicrobia T... [more]
A0A382GR40_9ZZZZ4.810e-1462.26Peptidase_S8 domain-containing protein (Fragment) ... [more]
A0A2E0PE30_9BACT1.020e-1358.49Tripeptidyl-peptidase II n=2 Tax=Verrucomicrobiale... [more]
A0A2P6TIJ6_CHLSO1.030e-1356.25Tripeptidyl-peptidase II n=2 Tax=Chlorella sorokin... [more]
A0A2E6T218_9BACT1.400e-1362.26Tripeptidyl-peptidase II n=1 Tax=Verrucomicrobiale... [more]
A0A1X2IXE8_9FUNG1.910e-1357.63Tripeptidyl-peptidase II n=1 Tax=Absidia repens Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16402contigE-fasciculatus_F_contig16402:521..715 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.5
Seed ortholog evalue2.9e-22
Seed eggNOG ortholog2880.D8LMK5
Preferred nameTPP2
KEGG koko:K01280
GOsGO:0000209,GO:0003674,GO:0003824,GO:0004175,GO:0004177,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008238,GO:0008240,GO:0009507,GO:0009536,GO:0009987,GO:0010883,GO:0010884,GO:0016020,GO:0016043,GO:0016567,GO:0016604,GO:0016787,GO:0017171,GO:0019538,GO:0022607,GO:0022626,GO:0031090,GO:0031974,GO:0031981,GO:0032446,GO:0032879,GO:0032991,GO:0033218,GO:0036211,GO:0042277,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044451,GO:0044464,GO:0048518,GO:0050789,GO:0051259,GO:0051260,GO:0065003,GO:0065007,GO:0065008,GO:0070011,GO:0070013,GO:0070647,GO:0071704,GO:0071840,GO:0098588,GO:0098805,GO:0140096,GO:1901564,GO:1905952,GO:1905954,GO:1990904
EggNOG free text desc.tripeptidyl-peptidase activity
EggNOG OGsCOG1404@1,KOG1114@2759
EC3.4.14.10
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03110
Hectar predicted targeting categoryother localisation
Exons1
Model size195
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928110.223169-CDS-E-fasciculatus_F_contig16402:520..7151622928110.223169-CDS-E-fasciculatus_F_contig16402:520..715Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16402 521..715 -
1695995823.387582-CDS-E-fasciculatus_F_contig16402:520..7151695995823.387582-CDS-E-fasciculatus_F_contig16402:520..715Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16402 521..715 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16402.4335.1prot_E-fasciculatus_F_contig16402.4335.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16402 521..715 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16402.4335.1

>prot_E-fasciculatus_F_contig16402.4335.1 ID=prot_E-fasciculatus_F_contig16402.4335.1|Name=mRNA_E-fasciculatus_F_contig16402.4335.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=65bp
GAVVGLRQRTLRLNPKWTNPSGDWRVGIKRAYELFPKLLVTRVKAERRKD
WDKKHLAAEVSPAVR
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mRNA from alignment at E-fasciculatus_F_contig16402:521..715-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16402.4335.1 ID=mRNA_E-fasciculatus_F_contig16402.4335.1|Name=mRNA_E-fasciculatus_F_contig16402.4335.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=195bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16402:521..715- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGTGCGGTGGTTGGTCTGCGACAAAGGACCCTCCGCCTCAACCCCAAGTG
GACCAACCCCAGCGGGGACTGGCGCGTGGGCATCAAGCGCGCCTACGAGC
TGTTCCCGAAGCTGCTGGTGACGCGGGTCAAGGCCGAGCGACGCAAGGAC
TGGGACAAGAAGCACCTCGCAGCAGAGGTGAGTCCGGCCGTCCGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16402:521..715-

>mRNA_E-fasciculatus_F_contig16402.4335.1 ID=mRNA_E-fasciculatus_F_contig16402.4335.1|Name=mRNA_E-fasciculatus_F_contig16402.4335.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=390bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16402:521..715- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGTGCGGTGGTTGGTCTGCGACAAAGGACCCTCCGCCTCAACCCCAAGTG
GACCAACCCCAGCGGGGACTGGCGCGTGGGCATCAAGCGCGCCTACGAGC
TGTTCCCGAAGCTGCTGGTGACGCGGGTCAAGGCCGAGCGACGCAAGGAC
TGGGACAAGAAGCACCTCGCAGCAGAGGTGAGTCCGGCCGTCCGGGGTGC
GGTGGTTGGTCTGCGACAAAGGACCCTCCGCCTCAACCCCAAGTGGACCA
ACCCCAGCGGGGACTGGCGCGTGGGCATCAAGCGCGCCTACGAGCTGTTC
CCGAAGCTGCTGGTGACGCGGGTCAAGGCCGAGCGACGCAAGGACTGGGA
CAAGAAGCACCTCGCAGCAGAGGTGAGTCCGGCCGTCCGG
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