mRNA_E-fasciculatus_F_contig1640.4333.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1640.4333.1 vs. uniprot
Match: D8LJJ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJJ6_ECTSI) HSP 1 Score: 985 bits (2546), Expect = 0.000e+0 Identity = 506/558 (90.68%), Postives = 526/558 (94.27%), Query Frame = 1
Query: 1384 YSMEPVRRTLAKAPGLRTWREINYIARNVLSHHVAFQQMAALSLERIASRLTNRTVVAGGEVLVEHGKKVTGFLILLRGSARIMEVAKVIRGDVEMVRAAEKQASGEHPVSARAMRSLAVPPEKRTRRDVKNIVDELSTPKGGLDIARFRHVPACLKTRIAAALRLEVWPAFSELIRDEKDPKTYLFIVKGSISLQAVTKANRFNVETLDIPAAGHLKNLDVDNALSLEDWRASGLGPCAAMHFDRQVLGEYPNSEESVLSVRAVTREETTAAVVDSEVYANGLVRESYSDSHSAVCREVLAQLKRCPSDTVVAGVAGLEAEMLCRLLKENPVLKRINGPCFPRLTGSIALKHYKAGEVVTEEEDFGDSLYIILEGRLEYAVKDSHRGVIDRSLATEVGIAPGLRCVGVMTAGDFFAPESMLGRRKGRRPRVLASGSYRVRCSPDIQDGGTGSDGATCFVLPRGKVEGAVHRDHHMKRSRLLQSSQSNHNNNSAVDSQGLTSSPIAGHQQTATISGPSK-DDVAKVCFGGPGERPGLAYLSLAGGGAVEGGRGRPGGG 3054
+ +PVRRTLAK PGLRTWREI+YIARNVLSHHVAFQQMAALSLERIASRLTNRTVVAGGEVLVEHGKKVTGFLILLRGSARIMEV+KVIRGDVE+VRAAEKQA GEHPV RA+RSLAVPPE+RTRRDVKNIV+ELSTPKGGLDIARFRHVPACLKTRIAAALRLEVWPAFSELIRDEKDPKTYLFIVKGSISLQAVT ANRF VETLDIPAAGHLKN DVDNALSLEDWRASGLGPCAAMHFDRQVLGEYPNSEESVLSVRAVTRE TTAAVVD+EVYANGL RE+YSDSHSAVCREVLAQLKR PSD VV GVAGLEAEMLCRLLKENPVLKRINGPCFPRL GSIALK YK GEVVTEEEDFGDSLYIILEG LEYAVKDSHRGVIDRSLA EVGIAPGLRCVGVMTAGDFFAPESMLGR KGRRPRVLASGSYRVRCSPD+QDGG GSDGATCFVLPRGKVE AVHRDHH+KRSRL QS+QSNHNNNSAVDS+GLT SPIAGH+QTA ISG S D++A+V FGGPGE PGLA+LSLAGGGA+EGGR PGGG
Sbjct: 41 WQWQPVRRTLAKTPGLRTWREISYIARNVLSHHVAFQQMAALSLERIASRLTNRTVVAGGEVLVEHGKKVTGFLILLRGSARIMEVSKVIRGDVELVRAAEKQAGGEHPVGTRALRSLAVPPERRTRRDVKNIVNELSTPKGGLDIARFRHVPACLKTRIAAALRLEVWPAFSELIRDEKDPKTYLFIVKGSISLQAVTNANRFTVETLDIPAAGHLKNFDVDNALSLEDWRASGLGPCAAMHFDRQVLGEYPNSEESVLSVRAVTREGTTAAVVDTEVYANGLARENYSDSHSAVCREVLAQLKRFPSDDVVPGVAGLEAEMLCRLLKENPVLKRINGPCFPRLIGSIALKRYKPGEVVTEEEDFGDSLYIILEGLLEYAVKDSHRGVIDRSLAKEVGIAPGLRCVGVMTAGDFFAPESMLGRSKGRRPRVLASGSYRVRCSPDVQDGGAGSDGATCFVLPRGKVEAAVHRDHHLKRSRLFQSNQSNHNNNSAVDSKGLTMSPIAGHRQTANISGSSSNDELARVSFGGPGEPPGLAHLSLAGGGAMEGGRRNPGGG 598
BLAST of mRNA_E-fasciculatus_F_contig1640.4333.1 vs. uniprot
Match: A0A6H5KBT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBT9_9PHAE) HSP 1 Score: 919 bits (2376), Expect = 0.000e+0 Identity = 470/519 (90.56%), Postives = 495/519 (95.38%), Query Frame = 1
Query: 1498 MAALSLERIASRLTNRTVVAGGEVLVEHGKKVTGFLILLRGSARIMEVAKVIRGDVEMVRAAEKQASGEHPVSARAMRSLAVPPEKRTRRDVKNIVDELSTPKGGLDIARFRHVPACLKTRIAAALRLEVWPAFSELIRDEKDPKTYLFIVKGSISLQAVTKANRFNVETLDIPAAGHLKNLDVDNALSLEDWRASGLGPCAAMHFDRQVLGEYPNSEESVLSVRAVTREETTAAVVDSEVYANGLVRESYSDSHSAVCREVLAQLKRCPSDTVVAGVAGLEAEMLCRLLKENPVLKRINGPCFPRLTGSIALKHYKAGEVVTEEEDFGDSLYIILEGRLEYAVKDSHRGVIDRSLATEVGIAPGLRCVGVMTAGDFFAPESMLGRRKGRRPRVLASGSYRVRCSPDIQDGGTGSDGATCFVLPRGKVEGAVHRDHHMKRSRLLQSSQSNHNNNSAVDSQGLTSSPIAGHQQTATISGPSKDDVAKVCFGGPGERPGLAYLSLAGGGAVEGGRGRPGGG 3054
MAALSLERIASRLTNRTVVAGGEVL+EHGKKVTGFLILLRGSARIMEV+K IRGDVE+VRAAEK+ASGEHPV ARAMRSLAVPPE+RT+RDVKNIV+E+STPKGGLDIARFRH+PACLKTR+AAALRLEVWPAFSELIR EKDPKTYLFIVKGS+SLQAVTKANRF VETLDIPAAGHLK+LDVDNALSLEDWRASGLGPCAAMHFDRQVLGEYPNSEESVLSVRAVTREETTAAVVD+E+YA+GL RE+YSDSHSAVCREVLAQLKRCPSDTVV GVAGLEAEMLCRLLKENPVLKRINGPCFPRLTGSIALK YK GEVVTEEEDFGDSLYIILEGRLEYAVKDSHRGVIDRSLA EVGIAPGLRCVGVMTAGDFFAPESMLGR KGRRPRVLASGSYRVRCSPDIQDGG GS+GATCFVLPRGKVE AVHRDH+MKR+RL QS+QSNHNNNSAVDS+GLT S IA HQQTA ISG SK ++A+VCFGGPGE P LAYLSLAGG VEGGR +PGGG
Sbjct: 1 MAALSLERIASRLTNRTVVAGGEVLIEHGKKVTGFLILLRGSARIMEVSKAIRGDVELVRAAEKRASGEHPVGARAMRSLAVPPERRTQRDVKNIVNEMSTPKGGLDIARFRHIPACLKTRLAAALRLEVWPAFSELIRHEKDPKTYLFIVKGSVSLQAVTKANRFTVETLDIPAAGHLKSLDVDNALSLEDWRASGLGPCAAMHFDRQVLGEYPNSEESVLSVRAVTREETTAAVVDTEIYADGLARENYSDSHSAVCREVLAQLKRCPSDTVVPGVAGLEAEMLCRLLKENPVLKRINGPCFPRLTGSIALKRYKPGEVVTEEEDFGDSLYIILEGRLEYAVKDSHRGVIDRSLAKEVGIAPGLRCVGVMTAGDFFAPESMLGRSKGRRPRVLASGSYRVRCSPDIQDGGAGSEGATCFVLPRGKVEAAVHRDHNMKRARLSQSNQSNHNNNSAVDSKGLTMSSIAEHQQTANISGSSKVELARVCFGGPGEPPRLAYLSLAGGEPVEGGRRQPGGG 519 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1640.4333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1640.4333.1 >prot_E-fasciculatus_F_contig1640.4333.1 ID=prot_E-fasciculatus_F_contig1640.4333.1|Name=mRNA_E-fasciculatus_F_contig1640.4333.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=1018bp MESTSTTGVDEENIRRLLNIPQRLRKSEDVFEIANSLYQASFIRQLDVITback to top mRNA from alignment at E-fasciculatus_F_contig1640:4838..17018+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1640.4333.1 ID=mRNA_E-fasciculatus_F_contig1640.4333.1|Name=mRNA_E-fasciculatus_F_contig1640.4333.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=12181bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1640:4838..17018+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1640:4838..17018+ >mRNA_E-fasciculatus_F_contig1640.4333.1 ID=mRNA_E-fasciculatus_F_contig1640.4333.1|Name=mRNA_E-fasciculatus_F_contig1640.4333.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=6108bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1640:4838..17018+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |