mRNA_E-fasciculatus_F_contig164.4329.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig164.4329.1 vs. uniprot
Match: A0A6H5K3X8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3X8_9PHAE) HSP 1 Score: 809 bits (2090), Expect = 7.610e-280 Identity = 530/704 (75.28%), Postives = 549/704 (77.98%), Query Frame = 1
Query: 10 MATPRRGGTGNEQDDDVPIARVVDRQADDRNRKDDDDVAVVVGQLVPGPTLTAYAVSATSRTAPDNALWAATARAPSSXXXXXXXAPVMHNSTGSFSVAGTXXXXXXXXXXXXXXXXXXXXXXVAXXQARGGGVEGDSAAA----GEGTYLPVMTHTGTQNVPGCGTASSTGGRRFGEGAPATKAAXXXXXXXXXXXXXXXXGGSLPMKDGDYVADGGPVLVACGQGKSMYDVKGCMSSWVLVGXXXXXXXXXXXXXXXXXXXXXXXXXXXX-APSSPSWALRSEDNPAGDGGVMCSSCVPSIASGQGSGTLITGGKDSVLREWEIAEGRPRLVAQISGHTDWISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHKSAPAAAEAAAARAASDAVAKEFAQGKRKSVLRAAFASGSRSSSGRDLGSEGGGLALPGDGGWSLAASMATAHGSSEFVTCCASPGGSSGAAGGWVATGGTDWSVRLWDVVKSRELGRLSFMGHSHPVRSLACSSDGNLLVSGGDDHKVIVWSPQSRRPLATLKSHAGAVHGIAVDPGTHSGDPPRWIASGGGEGFLLVWDPRNFRSPVATLRGEVAAAATAAADPSSLSEAFSSGVSVVEREGSLQGGLAGARSRGESGRWEGETTGATMLNAVNCLAGGGAGSGGDWLFAAGETVVRSWRRRDGVWHGGAGLPGEGLGGIASLSVVE 2106
MATPR+GGTG+EQ +DVPIARVVDR DDR+R+DDD VAVV+GQLVP P L AYAVSATSR PD WAAT+R PSS APVMHNSTGSFSVAGT XXXXXX VA X VE DSA+A GEGTY+PVMTHTG NVPGCG ASSTGGRRFGEGAPAT AA GGSLPMKDGDYVADGGPVLVACGQGKSMY VKGC+SSWVLVGXXXXXXXXXXXXXXXXXXXXXXXXXXXX APS+ SWALRSEDNPAGDGGVMCS+CVPSIASGQ SGTLITGGKDSVLREWEIAEGRPRLVA ISGHTDWISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHKSA WSLA+S+ATAHGSSEFVT A GWVATGGTDWSVRLWDVVKSRELGRLSFMGHSH VRSLACSSDGNLLVSGGDDHKVIVWSPQSRR +ATLKSHA AVHG+AVDPGTHSGD PRWIASGGGEGFLLVWDPRNF SPVATLRGEVAAA+ AAA PSSLS AFSSGVSVVEREGSLQGGLAGARSRGESGRWEGET GATMLNAVNCLA GGAGS GDWLFAAGETVVRSWRRRDG+WHGGAGLPGEGLGGIASLSV+E
Sbjct: 1 MATPRKGGTGDEQGNDVPIARVVDRPDDDRSRRDDD-VAVVIGQLVPAPALPAYAVSATSRATPDRTPWAATSRGPSSSPSYA--APVMHNSTGSFSVAGTSTSGGXXXXXXRRGSSGGP---VAGXXXXXXXVEEDSASAAAAGGEGTYMPVMTHTGMHNVPGCGIASSTGGRRFGEGAPATTAAARGAPFALEGG-----GGSLPMKDGDYVADGGPVLVACGQGKSMYKVKGCISSWVLVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPSNQSWALRSEDNPAGDGGVMCSACVPSIASGQSSGTLITGGKDSVLREWEIAEGRPRLVAHISGHTDWISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHKSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------------WSLASSVATAHGSSEFVTXXXXXXXXXXXAAGWVATGGTDWSVRLWDVVKSRELGRLSFMGHSHQVRSLACSSDGNLLVSGGDDHKVIVWSPQSRRVVATLKSHASAVHGVAVDPGTHSGDAPRWIASGGGEGFLLVWDPRNFGSPVATLRGEVAAASAAAA-PSSLSGAFSSGVSVVEREGSLQGGLAGARSRGESGRWEGETAGATMLNAVNCLAAGGAGSCGDWLFAAGETVVRSWRRRDGIWHGGAGLPGEGLGGIASLSVIE 671
BLAST of mRNA_E-fasciculatus_F_contig164.4329.1 vs. uniprot
Match: D7G1I6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I6_ECTSI) HSP 1 Score: 659 bits (1699), Expect = 2.270e-223 Identity = 393/569 (69.07%), Postives = 403/569 (70.83%), Query Frame = 1
Query: 448 LPVMTHTGTQNVPGCGTASSTGGRRFGEGAPATKAAXXXXXXXXXXXXXXXXGGSLPMKDGDYVADGGPVLVACGQGKSMYDVKGCMSSWVLVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPSSPSWALRSEDNPAGDGGVMCSSCVPSIASG-------------QGSGTLITGGKDSVLREWEIAEGRPRLVAQISGHTDWISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHKSAPAAAEAAAARAASDAVAKEFAQGKRKSVLRAAFASGSRSSSGRDLGS---EGGGLALPGDGGWSLAASMATAHGSSEFVTCCASPGGSSGAAGGWVATGGTDWSVRLWDVVKSRELGRLSFMGHSHPVRSLACSSDGNLLVSGGDDHKVIVWSPQSRRPLATLKSHAGAVHGIAVDPGTHSGDPPRWIASGGGEGFLLVWDPRNFRSPVATLRGEVAAAATAAADPSSLSEAFSSGVSVVEREGSLQGGLAGARSRGESGRWEGETTGATMLNAVNCLAGGGAGSGGDWLFAAGETVVRSWRRRDGVWHGGAGLPGEGLGGIASLSVVE 2106
+PVMTHTGT+NVPGCGTASSTGGRRFGEGAPAT XXXXXXXXXXXXXXXX GSLPMKDGDYVADGGPVLVACGQGKSMY+VKGCMSSWVLVG G GG + +A+ Q SGTLITGGKDSVLREWEIAEGRPRLVA ISGHTDWIS HKS AAAEAAAARAASDA+AKE AQGKRKS LRAAFASGSRSSSGRDLGS GGWVATGGTDWSVRLWDVVK RELGRLSFMGHSHPVRSLACSSDG LLVSGGDDHKVIVWSPQSRRPLATLKSHA AVHG+AVDPGTHSGD PRWIASGGGEGFLLVWDPRNF SPVA LRGEV AA DPSSLSEAFSSG+SV EREG LQGGLAGARSRGESGRWEGETTGATMLNAVNCLA GGAGSGGDWLFAAGETVVRSWRRRDGVWHGGAGLPGEGLGGIASLSV+E
Sbjct: 1 MPVMTHTGTKNVPGCGTASSTGGRRFGEGAPATTXXXXXXXXXXXXXXXXXXXGSLPMKDGDYVADGGPVLVACGQGKSMYNVKGCMSSWVLVG--------------------------------------------GGGGEQPDAVKEKMATXXXXXXXXXXXXXXQASGTLITGGKDSVLREWEIAEGRPRLVAHISGHTDWISCCALVPSATAGVAPSVAVSGGRDASVRFWHKSDAAAAEAAAARAASDALAKESAQGKRKSSLRAAFASGSRSSSGRDLGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGWVATGGTDWSVRLWDVVKFRELGRLSFMGHSHPVRSLACSSDGKLLVSGGDDHKVIVWSPQSRRPLATLKSHASAVHGVAVDPGTHSGDAPRWIASGGGEGFLLVWDPRNFGSPVAILRGEVTAA-----DPSSLSEAFSSGMSVAEREGGLQGGLAGARSRGESGRWEGETTGATMLNAVNCLAAGGAGSGGDWLFAAGETVVRSWRRRDGVWHGGAGLPGEGLGGIASLSVIE 520
BLAST of mRNA_E-fasciculatus_F_contig164.4329.1 vs. uniprot
Match: A0A1Y2EVM9_9BASI (Uncharacterized protein n=1 Tax=Leucosporidium creatinivorum TaxID=106004 RepID=A0A1Y2EVM9_9BASI) HSP 1 Score: 75.1 bits (183), Expect = 8.170e-10 Identity = 37/106 (34.91%), Postives = 54/106 (50.94%), Query Frame = 1
Query: 1402 WVATGGTDWSVRLWDVVKSRELGRLSFMGHSHPVRSLACSSDGNLLVSGGDDHKVIVWSPQSRRPLATLKSHAGAVHGIAVDPGTHSGDPPRWIASGGGEGFLLVW 1719
WVA+GG D +RLWDV + R L V SLA + G+LL +G + V VW P+SRR +A L H V G+ + G+ +W+ S + + +W
Sbjct: 304 WVASGGFDRKIRLWDVGEGRASSVLELPSPPASVYSLATTPSGSLLAAGTPERVVRVWDPRSRRQVARLSGHTDNVRGVLI------GEEGKWLLSASSDSTVKLW 403
BLAST of mRNA_E-fasciculatus_F_contig164.4329.1 vs. uniprot
Match: UPI000A3C1F0E (hypothetical protein n=1 Tax=Lentzea kentuckyensis TaxID=360086 RepID=UPI000A3C1F0E) HSP 1 Score: 71.6 bits (174), Expect = 9.500e-9 Identity = 46/125 (36.80%), Postives = 68/125 (54.40%), Query Frame = 1
Query: 1396 GGWVATGGTDWSVRLWDVVKSRELGRLSFMGHSHPVRSLACSSDGNLLVSGGDDHKVI-VWSPQSRRPLATLKSHAGAVHGIAVDPGTHSGDPPRWIASGGGEGFLLVW--DPRNFRSPVATLRG 1761
G +A+GG+D +VRLWDV +++G GH+ VR +A DG L S D V+ +W SR PLA ++ +G+ GIAV PGT IA+ G + +W DP + +S V ++ G
Sbjct: 1241 GTMLASGGSDRTVRLWDVATRKQIGA-QLTGHNGVVRGVAFLPDGRTLASVSDYDLVLRLWDVPSRTPLAAVRG-SGSFDGIAVQPGTGL------IATAGLNNVVGIWNPDPASVKSQVCSILG 1357
BLAST of mRNA_E-fasciculatus_F_contig164.4329.1 vs. uniprot
Match: A0A524L7R5_THOAR (WD40 repeat domain-containing protein n=1 Tax=Thorarchaeota archaeon (strain OWC) TaxID=2053491 RepID=A0A524L7R5_THOAR) HSP 1 Score: 69.7 bits (169), Expect = 1.250e-8 Identity = 37/110 (33.64%), Postives = 58/110 (52.73%), Query Frame = 1
Query: 1396 GGWVATGGTDWSVRLWDVVKSRELGRLSFMGHSHPVRSLACSSDGNLLVSGGD-DHKVIVWSPQSRRPLATLKSHAGAVHGIAVDPGTHSGDPPRWIASGGGEGFLLVWD 1722
G + +GG D ++RLWD +EL + F+GH PV ++ DG LVS D D V +W Q +++L ++ V +AV P R++ +GG +GF +WD
Sbjct: 33 GQMIISGGQDATIRLWDFASGKELHK--FVGHEGPVYNMVMMQDGKHLVSIADKDLAVKIWDIQKHELVSSLAPNSAHVTAVAVSP------DQRYLVTGGEDGFARIWD 134
BLAST of mRNA_E-fasciculatus_F_contig164.4329.1 vs. uniprot
Match: UPI00053FFA0A (DENN domain and WD repeat-containing protein SCD1 isoform X1 n=3 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053FFA0A) HSP 1 Score: 70.5 bits (171), Expect = 2.070e-8 Identity = 40/111 (36.04%), Postives = 58/111 (52.25%), Query Frame = 1
Query: 1399 GWVATGGTDWSVRLWDVVKSRELGRLSFMGHSHPVRSLACSSDGNLLVSGGDDHKVIVWSPQSRRPLATLKSHAGAVHGIAVDPGTHSGDPPRWIASGGGEGFLLVWDPRN 1731
G+ +G TD SVR+WD + R + GH+ VR++ SSD +VSG DDH ++VW Q PL LK H G + + + SGD + S +G + +WD R
Sbjct: 917 GFFISGSTDCSVRIWDPSRRGSELRATLRGHTGAVRAI--SSDRWKVVSGSDDHSILVWDKQQFIPLEELKGHEGQISCVRM----LSGDS---VLSSSHDGTVKMWDART 1018
BLAST of mRNA_E-fasciculatus_F_contig164.4329.1 vs. uniprot
Match: A0A5R9FQU6_9ACTN (Uncharacterized protein n=1 Tax=Streptomyces montanus TaxID=2580423 RepID=A0A5R9FQU6_9ACTN) HSP 1 Score: 69.3 bits (168), Expect = 3.870e-8 Identity = 43/126 (34.13%), Postives = 66/126 (52.38%), Query Frame = 1
Query: 1405 VATGGTDWSVRLWDVVKSRELGRLSFMGHSHPVRSLACSSDG---NLLVSGGDDHKVIVWSPQSRRPLATLKSHAGAVHGIAVDPGTHSGDPPRWIASGGGEGFLLVWDPRNFRSPVATLRGEVAA 1773
+A G D++VRLWD+ + R L + H + VR++A +SDG + SG D V +W+ P L G ++ +A++ GT S PP ++ASGG + + +WD R LRG AA
Sbjct: 579 LAISGDDFTVRLWDLDRERPLQQWR---HPYTVRTVAAASDGVSADWFASGSADGTVRLWAATDHAPKKVLYCRQGIINAVAINTGT-SPLPP-FLASGGDDRTVRIWDLRTLEPIGEPLRGHTAA 699
BLAST of mRNA_E-fasciculatus_F_contig164.4329.1 vs. uniprot
Match: A0A497Q7I7_THOAR (Uncharacterized protein n=2 Tax=Thorarchaeota archaeon (strain OWC) TaxID=2053491 RepID=A0A497Q7I7_THOAR) HSP 1 Score: 65.9 bits (159), Expect = 2.430e-7 Identity = 38/107 (35.51%), Postives = 56/107 (52.34%), Query Frame = 1
Query: 1405 VATGGTDWSVRLWDVVKSRELGRLSFMGHSHPVRSLACSSDGNLLVSGGD-DHKVIVWSPQSRRPLATLKSHAGAVHGIAVDPGTHSGDPPRWIASGGGEGFLLVWD 1722
+ +GG D ++RLWDV REL +L+ GH PV LA +D LVS D D V +WS +++L ++ V +AV P H +I +G +G + WD
Sbjct: 63 IISGGQDATIRLWDVGTGRELQKLT--GHEGPVYGLAVMADNQRLVSIADKDLAVKIWSLDDYALISSLAPNSAHVKTVAVSPDQH------YIVTGSADGIVRFWD 161
BLAST of mRNA_E-fasciculatus_F_contig164.4329.1 vs. uniprot
Match: A0A199VEU0_ANACO (DENN domain and WD repeat-containing protein SCD1 n=2 Tax=Ananas comosus TaxID=4615 RepID=A0A199VEU0_ANACO) HSP 1 Score: 66.6 bits (161), Expect = 3.080e-7 Identity = 38/112 (33.93%), Postives = 60/112 (53.57%), Query Frame = 1
Query: 1399 GWVATGGTDWSVRLWDV-VKSRELGRLSFMGHSHPVRSLACSSDGNLLVSGGDDHKVIVWSPQSRRPLATLKSHAGAVHGIAVDPGTHSGDPPRWIASGGGEGFLLVWDPRN 1731
G+ +G TD V++WD ++ EL R + GH+ P+R++ +SD + +VSG DDH VIVW Q+ R L LK H V + + G + + +G + +WD R
Sbjct: 884 GFFISGSTDCLVKVWDPSMRGSEL-RATLRGHTRPIRAI--NSDRSKIVSGSDDHSVIVWDKQTFRLLEELKGHDAPVSCVRMLSGER-------VLTASHDGTVKMWDVRT 985
BLAST of mRNA_E-fasciculatus_F_contig164.4329.1 vs. uniprot
Match: UPI001C976E72 (hypothetical protein n=1 Tax=Rhizobium leguminosarum TaxID=384 RepID=UPI001C976E72) HSP 1 Score: 65.9 bits (159), Expect = 4.540e-7 Identity = 35/78 (44.87%), Postives = 50/78 (64.10%), Query Frame = 1
Query: 1396 GGWVATGGTDWSVRLWDVVKSRELGRLSFMGHSHPVRSLACSSDGNLLVSGGDDHKVIVWSPQSRRPLATLKSHAGAV 1629
G W+ATGG D +V+LWDV R+L R+ + GH VRSL S+DG L+ S GDD ++ VW + P+A + +GA+
Sbjct: 409 GKWLATGGPDGAVQLWDVDWGRQL-RVEY-GHLAAVRSLDISADGTLIASAGDDARIRVW----QNPMADQRMSSGAL 480 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig164.4329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig164.4329.1 >prot_E-fasciculatus_F_contig164.4329.1 ID=prot_E-fasciculatus_F_contig164.4329.1|Name=mRNA_E-fasciculatus_F_contig164.4329.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=700bp MATPRRGGTGNEQDDDVPIARVVDRQADDRNRKDDDDVAVVVGQLVPGPTback to top mRNA from alignment at E-fasciculatus_F_contig164:12274..19246+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig164.4329.1 ID=mRNA_E-fasciculatus_F_contig164.4329.1|Name=mRNA_E-fasciculatus_F_contig164.4329.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=6973bp|location=Sequence derived from alignment at E-fasciculatus_F_contig164:12274..19246+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig164:12274..19246+ >mRNA_E-fasciculatus_F_contig164.4329.1 ID=mRNA_E-fasciculatus_F_contig164.4329.1|Name=mRNA_E-fasciculatus_F_contig164.4329.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=4200bp|location=Sequence derived from alignment at E-fasciculatus_F_contig164:12274..19246+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |