mRNA_E-fasciculatus_F_contig16396.4327.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16396.4327.1
Unique NamemRNA_E-fasciculatus_F_contig16396.4327.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16396.4327.1 vs. uniprot
Match: D8LC00_ECTSI (Glutaredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC00_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 9.770e-32
Identity = 58/62 (93.55%), Postives = 61/62 (98.39%), Query Frame = 1 
Query:   13 QLIELDQVDNGSAIQDALQTITGQRSVPNVFIGGTSIGGGDDTVRLQKSGELLTKVTAAGAV 198
            +LIELD+VDNGSAIQDALQ+ITGQRSVPNVFIGGTSIGGGDDTVRLQKSGELLTKVTA GAV
Sbjct:   43 ELIELDEVDNGSAIQDALQSITGQRSVPNVFIGGTSIGGGDDTVRLQKSGELLTKVTAVGAV 104
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BLAST of mRNA_E-fasciculatus_F_contig16396.4327.1 vs. uniprot
Match: A0A7S1B3V4_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B3V4_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.150e-17
Identity = 38/60 (63.33%), Postives = 50/60 (83.33%), Query Frame = 1 
Query:   19 IELDQVDNGSAIQDALQTITGQRSVPNVFIGGTSIGGGDDTVRLQKSGELLTKVTAAGAV 198
            +ELDQ+ +GS+IQ  L ++TGQR+VPNVFIGG SIGGGDDT  L++SG+L T + AAGA+
Sbjct:   51 VELDQMADGSSIQSGLLSLTGQRTVPNVFIGGKSIGGGDDTAALEQSGKLKTMLQAAGAL 110
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BLAST of mRNA_E-fasciculatus_F_contig16396.4327.1 vs. uniprot
Match: A0A836CIL9_9STRA (Thioredoxin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIL9_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.050e-16
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:   13 QLIELDQVDNGSAIQDALQTITGQRSVPNVFIGGTSIGGGDDTVRLQKSGELLTKVTAAGAV 198
            + IELDQV NG+ IQ AL+ +TG  +VP VF+GG  IGGGDDT R Q++GEL+  VTAAG +
Sbjct:   40 EAIELDQVSNGAEIQQALKGVTGSSTVPQVFVGGKYIGGGDDTARKQQNGELVQLVTAAGGL 101
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BLAST of mRNA_E-fasciculatus_F_contig16396.4327.1 vs. uniprot
Match: I0YZS3_COCSC (Glutaredoxin n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YZS3_COCSC)

HSP 1 Score: 75.1 bits (183), Expect = 4.970e-16
Identity = 38/59 (64.41%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:   22 ELDQVDNGSAIQDALQTITGQRSVPNVFIGGTSIGGGDDTVRLQKSGELLTKVTAAGAV 198
            ELDQ  +G  IQD LQ +TG RSVP VFIGG  IGGGDDTVR++KSGEL  K+   GA+
Sbjct:   47 ELDQRSDGDEIQDYLQQLTGGRSVPRVFIGGKFIGGGDDTVRMKKSGELQAKLADVGAM 105
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BLAST of mRNA_E-fasciculatus_F_contig16396.4327.1 vs. uniprot
Match: A0A0F7ZMH7_9HYPO (Glutaredoxin domain-containing protein n=1 Tax=Hirsutella minnesotensis 3608 TaxID=1043627 RepID=A0A0F7ZMH7_9HYPO)

HSP 1 Score: 73.9 bits (180), Expect = 1.570e-15
Identity = 38/61 (62.30%), Postives = 46/61 (75.41%), Query Frame = 1 
Query:   16 LIELDQVDNGSAIQDALQTITGQRSVPNVFIGGTSIGGGDDTVRLQKSGELLTKVTAAGAV 198
            L+ELDQ  +GSA+QDAL+ ITGQR+VPNVFI    IGG  D   L KSGEL +K+ AAGA+
Sbjct:   49 LLELDQETDGSAMQDALEEITGQRTVPNVFIAKKHIGGNSDIQALHKSGELKSKLQAAGAI 109
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BLAST of mRNA_E-fasciculatus_F_contig16396.4327.1 vs. uniprot
Match: K3WRU6_GLOUD (Glutaredoxin domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WRU6_GLOUD)

HSP 1 Score: 73.6 bits (179), Expect = 1.910e-15
Identity = 39/66 (59.09%), Postives = 48/66 (72.73%), Query Frame = 1 
Query:    1 ISFEQLIELDQVDNGSAIQDALQTITGQRSVPNVFIGGTSIGGGDDTVRLQKSGELLTKVTAAGAV 198
            + FE LIELDQVD+G AIQDAL  ITGQR+VPNVFIGG S+GG  D   L K+ +L+  +   GA+
Sbjct:   40 VQFE-LIELDQVDDGDAIQDALTEITGQRTVPNVFIGGKSVGGNSDIQALYKNDQLVPLLKQHGAL 104
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BLAST of mRNA_E-fasciculatus_F_contig16396.4327.1 vs. uniprot
Match: A0A6P3ZZT2_ZIZJJ (glutaredoxin-like n=2 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P3ZZT2_ZIZJJ)

HSP 1 Score: 73.2 bits (178), Expect = 2.850e-15
Identity = 38/62 (61.29%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:   13 QLIELDQVDNGSAIQDALQTITGQRSVPNVFIGGTSIGGGDDTVRLQKSGELLTKVTAAGAV 198
            ++IELD   +GS IQ AL  ITGQR+VPNVFIGG  IGG D+T  L K G+L+T +T AGAV
Sbjct:   41 KVIELDTESDGSEIQSALAEITGQRTVPNVFIGGNHIGGCDNTKALHKDGKLITLLTEAGAV 102
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BLAST of mRNA_E-fasciculatus_F_contig16396.4327.1 vs. uniprot
Match: A0A3M6UI22_POCDA (Glutaredoxin domain-containing protein (Fragment) n=2 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6UI22_POCDA)

HSP 1 Score: 73.9 bits (180), Expect = 2.980e-15
Identity = 37/61 (60.66%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:   16 LIELDQVDNGSAIQDALQTITGQRSVPNVFIGGTSIGGGDDTVRLQKSGELLTKVTAAGAV 198
            L+ELD+ D+G   QDALQ ITG RSVP VFIGGT +GGGDD   LQ  G+L  K+  AGA+
Sbjct:   77 LVELDERDDGDEFQDALQKITGGRSVPRVFIGGTFVGGGDDVQGLQNKGQLKPKLENAGAL 137
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BLAST of mRNA_E-fasciculatus_F_contig16396.4327.1 vs. uniprot
Match: A0A7S0Q1V6_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q1V6_9EUKA)

HSP 1 Score: 72.8 bits (177), Expect = 5.080e-15
Identity = 36/60 (60.00%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:   19 IELDQVDNGSAIQDALQTITGQRSVPNVFIGGTSIGGGDDTVRLQKSGELLTKVTAAGAV 198
            IELD+ D+G+AIQ+AL  +TGQ++VPNVF+GG SIGGG +T  L +SGEL  K+ AA A+
Sbjct:   57 IELDKRDDGNAIQNALLKLTGQKTVPNVFVGGKSIGGGSETKALSQSGELKKKLVAAKAL 116
[Close]
BLAST of mRNA_E-fasciculatus_F_contig16396.4327.1 vs. uniprot
Match: A0A7S3CE29_9CHLO (Hypothetical protein n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3CE29_9CHLO)

HSP 1 Score: 72.4 bits (176), Expect = 9.200e-15
Identity = 35/66 (53.03%), Postives = 50/66 (75.76%), Query Frame = 1 
Query:    1 ISFEQLIELDQVDNGSAIQDALQTITGQRSVPNVFIGGTSIGGGDDTVRLQKSGELLTKVTAAGAV 198
            ++F++ ++LD++D+G  +QDAL+ ITGQRSVPN+FI G SIGG DD   L K G+L TK+  AG +
Sbjct:   62 VTFDE-VQLDRIDSGPQMQDALKEITGQRSVPNIFIKGKSIGGCDDLTSLHKQGKLETKLKEAGVL 126
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16396.4327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC00_ECTSI9.770e-3293.55Glutaredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A7S1B3V4_9STRA1.150e-1763.33Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A836CIL9_9STRA1.050e-1659.68Thioredoxin-like protein n=1 Tax=Tribonema minus T... [more]
I0YZS3_COCSC4.970e-1664.41Glutaredoxin n=1 Tax=Coccomyxa subellipsoidea (str... [more]
A0A0F7ZMH7_9HYPO1.570e-1562.30Glutaredoxin domain-containing protein n=1 Tax=Hir... [more]
K3WRU6_GLOUD1.910e-1559.09Glutaredoxin domain-containing protein n=1 Tax=Glo... [more]
A0A6P3ZZT2_ZIZJJ2.850e-1561.29glutaredoxin-like n=2 Tax=Ziziphus jujuba TaxID=32... [more]
A0A3M6UI22_POCDA2.980e-1560.66Glutaredoxin domain-containing protein (Fragment) ... [more]
A0A7S0Q1V6_9EUKA5.080e-1560.00Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S3CE29_9CHLO9.200e-1553.03Hypothetical protein n=1 Tax=Chloropicon roscoffen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16396contigE-fasciculatus_F_contig16396:1436..2507 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score76.3
Seed ortholog evalue6.3e-12
Seed eggNOG ortholog248742.XP_005648436.1
KEGG koko:K03676
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005783,GO:0005794,GO:0012505,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.protein disulfide oxidoreductase activity
EggNOG OGs37V9D@33090,COG0695@1,KOG1752@2759
COG Functional cat.O
Best tax levelViridiplantae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03110
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGlutaredoxin
Ec32 orthologEc-20_003920.1
Exons2
Model size201
Cds size201
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928108.7639601-CDS-E-fasciculatus_F_contig16396:1435..15191622928108.7639601-CDS-E-fasciculatus_F_contig16396:1435..1519Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16396 1436..1519 -
1695995822.6127656-CDS-E-fasciculatus_F_contig16396:1435..15191695995822.6127656-CDS-E-fasciculatus_F_contig16396:1435..1519Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16396 1436..1519 -
1622928108.7835817-CDS-E-fasciculatus_F_contig16396:2390..25071622928108.7835817-CDS-E-fasciculatus_F_contig16396:2390..2507Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16396 2391..2507 -
1695995822.6457777-CDS-E-fasciculatus_F_contig16396:2390..25071695995822.6457777-CDS-E-fasciculatus_F_contig16396:2390..2507Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16396 2391..2507 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16396.4327.1prot_E-fasciculatus_F_contig16396.4327.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16396 1436..2507 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16396.4327.1

>prot_E-fasciculatus_F_contig16396.4327.1 ID=prot_E-fasciculatus_F_contig16396.4327.1|Name=mRNA_E-fasciculatus_F_contig16396.4327.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=67bp
ISFEQLIELDQVDNGSAIQDALQTITGQRSVPNVFIGGTSIGGGDDTVRL
QKSGELLTKVTAAGAV*
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mRNA from alignment at E-fasciculatus_F_contig16396:1436..2507-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16396.4327.1 ID=mRNA_E-fasciculatus_F_contig16396.4327.1|Name=mRNA_E-fasciculatus_F_contig16396.4327.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1072bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16396:1436..2507- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATTTCGTTCGAGCAGCTCATCGAGCTAGACCAGGTGGATAACGGCAGCGC
CATCCAGGATGCTCTCCAGACGATCACTGGCCAGCGCTCTGTGCCTAACG
TCTTCATTGGCGGAACGGTAGGATGCGGGCGGAACCAGTTTCAGAGAGAG
GGGGTGGTAGTGGGAATACAGGCTTTTTTTTTTGCTCTTTTTTCGCAATG
TGTGAATATGAAAAGTGGGAATCATCCACGACAGACGTTAAGAGATTCGA
GCGTTGATGAAGGCGATCTCCACAAATGTTTATTTTTATTTTTGCGGTCG
AGTACAAACGTGTTGTGTTTTTTGCAAGGAAAAAAAGGCCCGTCGACAAA
GGGGAAGTGGGCGAAATAGAGCGGCGATAATCGTAGAATCGGGTGGTCGC
CATGCCTGACACCCGTTAGAAGAATAATTATTCCCTCCACAAGCATCATC
GCAATAGAGACACGTGTTATCCGTTGCCTCCACGAGCGAGTGACATGTTC
TTCCTTGTGTGTGTTCTTTCGGTAGCATCGACCGTAATTACAGGCTGAAA
AAAATGATGTTACGTCGGCCTCACAGCTAGACAATAAAACATGAACATAC
TTTCTCTGCAGATGTTGTTGTTGTCCATCAATTCCGGACGCCATGTCAGA
CTCTTCGGCACGGTTTGGCGCGTCAGCCGGAGTGGTGTGTTTCTTCCACG
TTCGTTGTGCGACGCTCGCTTGAACCTGAAAAGAACCTGAAAAGTAACGC
TATGACTTCCACGCCATTGTATCTCGGACTCTTTATCCGTGTAAGAGATG
AATTCGTGTAAGAGAGCATACTTCATAGATTCAGAACTAACGACGACAGT
GGCCAGCGATAGCCGCCCCGCATCGCCCGCGAATCATTCCTTGCCTCTCC
CCACTCCGACTCTTGTTGCTCTGCGTACTTGTTGAATCTCCTCGCCCCCT
CCCCTGTTTGTTCCTTGCGCGTTTTGCTCTTTCGGCAGTCGATCGGAGGA
GGAGACGACACGGTCCGGCTGCAAAAGTCCGGAGAGTTGTTGACCAAGGT
CACCGCCGCTGGCGCCGTCTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16396:1436..2507-

>mRNA_E-fasciculatus_F_contig16396.4327.1 ID=mRNA_E-fasciculatus_F_contig16396.4327.1|Name=mRNA_E-fasciculatus_F_contig16396.4327.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=402bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16396:1436..2507- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATTTCGTTCGAGCAGCTCATCGAGCTAGACCAGGTGGATAACGGCAGCGC
CATCCAGGATGCTCTCCAGACGATCACTGGCCAGCGCTCTGTGCCTAACG
TCTTCATTGGCGGAACGATTTCGTTCGAGCAGCTCATCGAGCTAGACCAG
GTGGATAACGGCAGCGCCATCCAGGATGCTCTCCAGACGATCACTGGCCA
GCGCTCTGTGCCTAACGTCTTCATTGGCGGAACGTCGATCGGAGGAGGAG
ACGACACGGTCCGGCTGCAAAAGTCCGGAGAGTTGTTGACCAAGGTCACC
GCCGCTGGCGCCGTCTGATCGATCGGAGGAGGAGACGACACGGTCCGGCT
GCAAAAGTCCGGAGAGTTGTTGACCAAGGTCACCGCCGCTGGCGCCGTCT
GA
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