mRNA_E-fasciculatus_F_contig16395.4326.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16395.4326.1
Unique NamemRNA_E-fasciculatus_F_contig16395.4326.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16395.4326.1 vs. uniprot
Match: A0A6H5KYM4_9PHAE (MYB protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYM4_9PHAE)

HSP 1 Score: 589 bits (1519), Expect = 5.810e-195
Identity = 355/431 (82.37%), Postives = 367/431 (85.15%), Query Frame = 1 
Query:    1 QDTANTPSKKPSLTGSSMDMLSPIALETKLIASYDAGSDSSILPTLSPFSQTSRLGYASPSRDSGSGGGQFGRSLLSPPRSAGKLMYGSGGGERLWSSSPNGPATLGSHAGRSSTDSLEAARFSLSPFPRGGGGGGLGMLHLRDKVWASPEKGGRPAAGREGGHAE----RGGTKDKGPPQQQALVGGGGLPTPSKSPRSRDWKAAVGDSEKRFFAAAASARDGATAITPGEAREMAAKRSGRVVDGVDQDHHQRRSPSSPAGDPFESWGRPDRGGSRDDARDAATTGKDSHSQPHRIVETSPWSRDKNDQEQEDNTPPGGDPRNSKCLGTPRAPSHTTPSPAPATSLDESDADDTLQAAASLVSFQKPRVGEAPRLKGPLGTSALRVTLGTPVVSTGTPSISSSVQAKLSLPRTSPPRGAPSFPAKETGG 1281
            +D ANTPSKKP+LTGSS D LSPIALETKLIASYDAGSDSSILPTLSPFSQTSRLGYASPSRD G  GGQFGRSLLSPPRSAGKLMYGS GG R+WSSSPNGPATLGSHAG SSTDSLEAARFSLSPFPR GGGG LGMLHLRDK WASP +G R AAGREGGHAE    +G  KDKGP QQQ LVGGG LPTPSKSPRSRDWKAAVGDSEKRFFAAAA A   A AITPGEAREMAAKRSGRV  G      QR+S SSP GDPF  WGR +RG SRDDARDAA  GKD     HR+  +S WS DK++QE+ED TPPG  PRN KCLGTP APSHTTPSP PATS D SDADDTLQAAASLVSFQKPRVGEAPRLKGPLGTSALRVTLGTPVVSTGTPSISSSVQAKLSLPRTSPPRG PSFP KETGG
Sbjct:  471 RDNANTPSKKPNLTGSSTDTLSPIALETKLIASYDAGSDSSILPTLSPFSQTSRLGYASPSRDGG--GGQFGRSLLSPPRSAGKLMYGSEGGGRVWSSSPNGPATLGSHAGSSSTDSLEAARFSLSPFPRSGGGG-LGMLHLRDKAWASPIRGNR-AAGREGGHAEERDGKGVAKDKGP-QQQELVGGG-LPTPSKSPRSRDWKAAVGDSEKRFFAAAA-ANGAAAAITPGEAREMAAKRSGRVGGG-----DQRQSTSSP-GDPFGPWGRRERGESRDDARDAAA-GKDREG--HRVETSSSWSCDKSEQEREDTTPPGV-PRNPKCLGTPCAPSHTTPSP-PATSTDTSDADDTLQAAASLVSFQKPRVGEAPRLKGPLGTSALRVTLGTPVVSTGTPSISSSVQAKLSLPRTSPPRGCPSFPDKETGG 883
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BLAST of mRNA_E-fasciculatus_F_contig16395.4326.1 vs. uniprot
Match: D7G7U2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7U2_ECTSI)

HSP 1 Score: 563 bits (1452), Expect = 1.160e-190
Identity = 343/437 (78.49%), Postives = 361/437 (82.61%), Query Frame = 1 
Query:    1 QDTANTPSKKPSLTGSSMDMLSPIALETKLIASYDAGSDSSILPTLSPFSQTSRLGYASPSRDSGSGGGQFGRSLLSPPRSAGKLMYGSGGGERLWSSSPNGPATLGSHAGRSSTDSLEAARFSLSPFPRGGGGGG---LGMLHLRDKVWASPEKGGRPAAGREGGHAE----RGGTKDKGPPQQQALVGGGGLPTPSKSPRSRDWKAAVGDSEKRFFAAAASARDGATA---ITPGEAREMAAKRSGRVVDGVDQDHHQRRSPSSPAGDPFESWGRPDRGGSRDDARDAATTGKDSHSQPHRIVETSPWSRDKNDQEQEDNTPPGGDPRNSKCLGTPRAPSHTTPSPAPATSLDESDADDTLQAAASLVSFQKPRVGEAPRLKGPLGTSALRVTLGTPVVSTGTPSISSSVQAKLSLPRTSPPRGAPSFPAKETGG 1281
            +DT+NTPSKKP+LTGSS D LSPIALETKLIASYDAGSDSSILPTLSPFSQTSRLGYASPSRD    GGQFGRSLLSPPRSAGKLMYGSGG  R+WSSSPNGPATLGSHAG SSTDSLEAARFSLSPFPR GG      LGMLHLRDK WASP +G R AAG+EGGHAE    +G  KDKGP QQQ LVGGG LPTPSKSPRSRDWKAAVGDSEKRFF               ITP EAREMAAKRS RV  G      QR+SP+SP GDPF SWGR +RGGSRD ARDAA  GKD  +  HR+  +S WS DK++QE+ED TPPG  PR+ KCLGTPRAPSHTTPSP PATS D SDADDTLQAAASLVSFQKPR+GEAPRLKGPLGTSALRVTLGTPVVSTGTPSISSSVQAKLSLPRTSPPRG PSFPAKETGG
Sbjct:   14 RDTSNTPSKKPNLTGSSTDTLSPIALETKLIASYDAGSDSSILPTLSPFSQTSRLGYASPSRDGN--GGQFGRSLLSPPRSAGKLMYGSGGRGRVWSSSPNGPATLGSHAGSSSTDSLEAARFSLSPFPRSGGXXXXXXLGMLHLRDKAWASPVRGDR-AAGKEGGHAEERDGKGVAKDKGP-QQQGLVGGG-LPTPSKSPRSRDWKAAVGDSEKRFFXXXXXXXXXXXXXXXITPEEAREMAAKRSWRVGGG-----DQRQSPASP-GDPFGSWGRRERGGSRDGARDAAG-GKDREA--HRVETSSSWSCDKSEQEREDTTPPGV-PRHPKCLGTPRAPSHTTPSP-PATSTDASDADDTLQAAASLVSFQKPRLGEAPRLKGPLGTSALRVTLGTPVVSTGTPSISSSVQAKLSLPRTSPPRGPPSFPAKETGG 434
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16395.4326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KYM4_9PHAE5.810e-19582.37MYB protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP... [more]
D7G7U2_ECTSI1.160e-19078.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16395contigE-fasciculatus_F_contig16395:442..2408 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-06_000290.1
Exons1
Model size1967
Cds size1311
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16395.4326.1prot_E-fasciculatus_F_contig16395.4326.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16395 1047..2357 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928108.6831992-UTR-E-fasciculatus_F_contig16395:441..10461622928108.6831992-UTR-E-fasciculatus_F_contig16395:441..1046Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16395 442..1046 -
1695995822.5822861-UTR-E-fasciculatus_F_contig16395:441..10461695995822.5822861-UTR-E-fasciculatus_F_contig16395:441..1046Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16395 442..1046 -
1622928108.7237763-UTR-E-fasciculatus_F_contig16395:2357..24081622928108.7237763-UTR-E-fasciculatus_F_contig16395:2357..2408Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16395 2358..2408 -
1695995822.602932-UTR-E-fasciculatus_F_contig16395:2357..24081695995822.602932-UTR-E-fasciculatus_F_contig16395:2357..2408Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16395 2358..2408 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928108.7049136-CDS-E-fasciculatus_F_contig16395:1046..23571622928108.7049136-CDS-E-fasciculatus_F_contig16395:1046..2357Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16395 1047..2357 -
1695995822.5922916-CDS-E-fasciculatus_F_contig16395:1046..23571695995822.5922916-CDS-E-fasciculatus_F_contig16395:1046..2357Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16395 1047..2357 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16395.4326.1

>prot_E-fasciculatus_F_contig16395.4326.1 ID=prot_E-fasciculatus_F_contig16395.4326.1|Name=mRNA_E-fasciculatus_F_contig16395.4326.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=437bp
MDMLSPIALETKLIASYDAGSDSSILPTLSPFSQTSRLGYASPSRDSGSG
GGQFGRSLLSPPRSAGKLMYGSGGGERLWSSSPNGPATLGSHAGRSSTDS
LEAARFSLSPFPRGGGGGGLGMLHLRDKVWASPEKGGRPAAGREGGHAER
GGTKDKGPPQQQALVGGGGLPTPSKSPRSRDWKAAVGDSEKRFFAAAASA
RDGATAITPGEAREMAAKRSGRVVDGVDQDHHQRRSPSSPAGDPFESWGR
PDRGGSRDDARDAATTGKDSHSQPHRIVETSPWSRDKNDQEQEDNTPPGG
DPRNSKCLGTPRAPSHTTPSPAPATSLDESDADDTLQAAASLVSFQKPRV
GEAPRLKGPLGTSALRVTLGTPVVSTGTPSISSSVQAKLSLPRTSPPRGA
PSFPAKETGGSGGGGGGRALPRACETRWKRRTARRD*
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mRNA from alignment at E-fasciculatus_F_contig16395:442..2408-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16395.4326.1 ID=mRNA_E-fasciculatus_F_contig16395.4326.1|Name=mRNA_E-fasciculatus_F_contig16395.4326.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1967bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16395:442..2408- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGACACCGCTAACACGCCGTCCAAGAAACCGAGCTTGACCGGCAGCAG
CATGGACATGCTGTCGCCGATCGCGTTGGAGACCAAGCTCATCGCGAGCT
ACGACGCGGGGTCGGATAGCAGCATCCTGCCGACCTTGTCCCCCTTCAGC
CAGACCAGCCGCCTGGGCTATGCGTCGCCTTCGCGCGACAGCGGCAGCGG
TGGCGGTCAGTTTGGCCGGTCTTTGTTGTCACCACCGCGCTCCGCCGGGA
AGCTGATGTACGGCAGCGGCGGTGGGGAGAGGTTGTGGTCGTCGTCACCG
AACGGGCCTGCAACGTTGGGGAGTCACGCCGGTCGTAGCAGCACCGACTC
GCTTGAAGCGGCGAGGTTCTCGCTTTCGCCGTTTCCACGCGGCGGTGGCG
GCGGCGGCCTTGGGATGCTTCACCTCCGCGATAAGGTGTGGGCGTCGCCG
GAAAAAGGGGGCCGCCCAGCAGCAGGGAGAGAAGGGGGGCACGCGGAAAG
GGGGGGCACCAAGGACAAGGGGCCGCCGCAGCAGCAAGCACTCGTCGGAG
GCGGCGGGTTGCCCACCCCGAGCAAGAGCCCGAGGAGCCGCGATTGGAAG
GCGGCGGTCGGGGACAGCGAGAAGCGCTTCTTCGCCGCTGCCGCCAGCGC
GCGCGACGGGGCCACGGCCATCACCCCGGGGGAGGCGCGAGAGATGGCCG
CGAAGCGAAGCGGGCGAGTCGTCGACGGGGTGGATCAAGATCACCATCAA
CGGCGGTCCCCTTCCTCCCCCGCGGGCGATCCGTTCGAGTCTTGGGGCCG
CCCCGATCGTGGGGGGTCTCGGGACGATGCACGGGACGCCGCTACTACCG
GTAAGGACAGTCACAGTCAACCGCATCGGATCGTCGAGACGTCTCCTTGG
AGCCGTGACAAGAACGATCAAGAGCAAGAGGACAACACCCCGCCGGGGGG
GGACCCGCGGAATTCGAAATGCTTGGGTACCCCCCGCGCGCCCAGCCACA
CCACGCCGTCGCCGGCGCCGGCGACAAGCCTGGACGAGTCGGACGCCGAC
GACACTCTCCAGGCGGCAGCCTCCCTGGTGTCGTTCCAGAAGCCGAGGGT
AGGCGAAGCGCCGCGGCTCAAGGGCCCGCTCGGCACGAGCGCGCTTCGCG
TGACCCTCGGAACGCCGGTGGTGTCGACGGGGACCCCCTCGATCAGCAGC
AGCGTGCAGGCCAAGCTCTCGCTGCCAAGAACCTCGCCGCCCCGCGGGGC
TCCGTCGTTTCCGGCGAAAGAAACTGGCGGCAGCGGGGGGGGAGGGGGGG
GGCGGGCGTTGCCGCGGGCCTGCGAGACCCGATGGAAACGGCGTACCGCG
CGGCGGGACTAGAAGTAGGGTCCAGCGCAAAGGGCGAGGGCGGGCAAGGC
TCCTCCTCCTCCCCCTCCTCCTTGGGTGCAAGCGTGGAGGCCGTGAAGCG
AGGAGGGTCGTCGTCGCTCAAGTCCGGGCGCAGCAACGGCATGTTCGATG
CCGTGTCTCCAACGGCTCCGGTACAGGAGAGCGGCACTCCTTACTCGGTC
TGCAGAGTAGAGCGCAAGGGCAGGCCTAACGACACTCCCCCCGCTGCCGC
GAGCGCCGAGCAAAAGGCGGAACACGGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCTGCAGCCGAGAGGGAGCAGCAGGGTCGGCGGAGAGC
AGCAGCAGCGCGAAGAACGGGGCTTCGGCGGCATCTGCCTGCGGCAGCAG
CGGCGAGCCTTTGTGTCACACGCCGCTGAAACCAGCAGCCGCTGGTCGCG
CTGCCGCACTGGGAGCGGCGTCGCGCTCTTCTGGGTGGTCGGGCTCTGGG
TCGGGTCCGTGGGCGACACCGCCGCCGATGGCCATGACCATGGGGACGCC
CTGCTCAGGCAGCAAGTTCCGGTCAGCGGATGATGACGAGGAGAGCGACT
ACTCGGACTACGAAACG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16395:442..2408-

>mRNA_E-fasciculatus_F_contig16395.4326.1 ID=mRNA_E-fasciculatus_F_contig16395.4326.1|Name=mRNA_E-fasciculatus_F_contig16395.4326.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2622bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16395:442..2408- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGACATGCTGTCGCCGATCGCGTTGGAGACCAAGCTCATCGCGAGCTA
CGACGCGGGGTCGGATAGCAGCATCCTGCCGACCTTGTCCCCCTTCAGCC
AGACCAGCCGCCTGGGCTATGCGTCGCCTTCGCGCGACAGCGGCAGCGGT
GGCGGTCAGTTTGGCCGGTCTTTGTTGTCACCACCGCGCTCCGCCGGGAA
GCTGATGTACGGCAGCGGCGGTGGGGAGAGGTTGTGGTCGTCGTCACCGA
ACGGGCCTGCAACGTTGGGGAGTCACGCCGGTCGTAGCAGCACCGACTCG
CTTGAAGCGGCGAGGTTCTCGCTTTCGCCGTTTCCACGCGGCGGTGGCGG
CGGCGGCCTTGGGATGCTTCACCTCCGCGATAAGGTGTGGGCGTCGCCGG
AAAAAGGGGGCCGCCCAGCAGCAGGGAGAGAAGGGGGGCACGCGGAAAGG
GGGGGCACCAAGGACAAGGGGCCGCCGCAGCAGCAAGCACTCGTCGGAGG
CGGCGGGTTGCCCACCCCGAGCAAGAGCCCGAGGAGCCGCGATTGGAAGG
CGGCGGTCGGGGACAGCGAGAAGCGCTTCTTCGCCGCTGCCGCCAGCGCG
CGCGACGGGGCCACGGCCATCACCCCGGGGGAGGCGCGAGAGATGGCCGC
GAAGCGAAGCGGGCGAGTCGTCGACGGGGTGGATCAAGATCACCATCAAC
GGCGGTCCCCTTCCTCCCCCGCGGGCGATCCGTTCGAGTCTTGGGGCCGC
CCCGATCGTGGGGGGTCTCGGGACGATGCACGGGACGCCGCTACTACCGG
TAAGGACAGTCACAGTCAACCGCATCGGATCGTCGAGACGTCTCCTTGGA
GCCGTGACAAGAACGATCAAGAGCAAGAGGACAACACCCCGCCGGGGGGG
GACCCGCGGAATTCGAAATGCTTGGGTACCCCCCGCGCGCCCAGCCACAC
CACGCCGTCGCCGGCGCCGGCGACAAGCCTGGACGAGTCGGACGCCGACG
ACACTCTCCAGGCGGCAGCCTCCCTGGTGTCGTTCCAGAAGCCGAGGGTA
GGCGAAGCGCCGCGGCTCAAGGGCCCGCTCGGCACGAGCGCGCTTCGCGT
GACCCTCGGAACGCCGGTGGTGTCGACGGGGACCCCCTCGATCAGCAGCA
GCGTGCAGGCCAAGCTCTCGCTGCCAAGAACCTCGCCGCCCCGCGGGGCT
CCGTCGTTTCCGGCGAAAGAAACTGGCGGCAGCGGGGGGGGAGGGGGGGG
GCGGGCGTTGCCGCGGGCCTGCGAGACCCGATGGAAACGGCGTACCGCGC
GGCGGGACTAGATGGACATGCTGTCGCCGATCGCGTTGGAGACCAAGCTC
ATCGCGAGCTACGACGCGGGGTCGGATAGCAGCATCCTGCCGACCTTGTC
CCCCTTCAGCCAGACCAGCCGCCTGGGCTATGCGTCGCCTTCGCGCGACA
GCGGCAGCGGTGGCGGTCAGTTTGGCCGGTCTTTGTTGTCACCACCGCGC
TCCGCCGGGAAGCTGATGTACGGCAGCGGCGGTGGGGAGAGGTTGTGGTC
GTCGTCACCGAACGGGCCTGCAACGTTGGGGAGTCACGCCGGTCGTAGCA
GCACCGACTCGCTTGAAGCGGCGAGGTTCTCGCTTTCGCCGTTTCCACGC
GGCGGTGGCGGCGGCGGCCTTGGGATGCTTCACCTCCGCGATAAGGTGTG
GGCGTCGCCGGAAAAAGGGGGCCGCCCAGCAGCAGGGAGAGAAGGGGGGC
ACGCGGAAAGGGGGGGCACCAAGGACAAGGGGCCGCCGCAGCAGCAAGCA
CTCGTCGGAGGCGGCGGGTTGCCCACCCCGAGCAAGAGCCCGAGGAGCCG
CGATTGGAAGGCGGCGGTCGGGGACAGCGAGAAGCGCTTCTTCGCCGCTG
CCGCCAGCGCGCGCGACGGGGCCACGGCCATCACCCCGGGGGAGGCGCGA
GAGATGGCCGCGAAGCGAAGCGGGCGAGTCGTCGACGGGGTGGATCAAGA
TCACCATCAACGGCGGTCCCCTTCCTCCCCCGCGGGCGATCCGTTCGAGT
CTTGGGGCCGCCCCGATCGTGGGGGGTCTCGGGACGATGCACGGGACGCC
GCTACTACCGGTAAGGACAGTCACAGTCAACCGCATCGGATCGTCGAGAC
GTCTCCTTGGAGCCGTGACAAGAACGATCAAGAGCAAGAGGACAACACCC
CGCCGGGGGGGGACCCGCGGAATTCGAAATGCTTGGGTACCCCCCGCGCG
CCCAGCCACACCACGCCGTCGCCGGCGCCGGCGACAAGCCTGGACGAGTC
GGACGCCGACGACACTCTCCAGGCGGCAGCCTCCCTGGTGTCGTTCCAGA
AGCCGAGGGTAGGCGAAGCGCCGCGGCTCAAGGGCCCGCTCGGCACGAGC
GCGCTTCGCGTGACCCTCGGAACGCCGGTGGTGTCGACGGGGACCCCCTC
GATCAGCAGCAGCGTGCAGGCCAAGCTCTCGCTGCCAAGAACCTCGCCGC
CCCGCGGGGCTCCGTCGTTTCCGGCGAAAGAAACTGGCGGCAGCGGGGGG
GGAGGGGGGGGGCGGGCGTTGCCGCGGGCCTGCGAGACCCGATGGAAACG
GCGTACCGCGCGGCGGGACTAG
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