mRNA_E-fasciculatus_F_contig16383.4324.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16383.4324.1
Unique NamemRNA_E-fasciculatus_F_contig16383.4324.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16383.4324.1 vs. uniprot
Match: D7G5U4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5U4_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 4.580e-40
Identity = 89/152 (58.55%), Postives = 106/152 (69.74%), Query Frame = 1 
Query:    1 PPPTGPGRQNPLYRQSHQHHVPGQTQPFPSAHPPPTPAPQHPNRTATRFSEAGVEEVLNILAERVIMRHPTAGYMRTTIQSYQDLRRQAPGRGQVAHILAVANISNGSAKTFERNAKLLGAMGAVLNHADFFMTARSIEAGLGSDGPADASA 456
            PPP   GRQ   + QSH  H   +  P P    PP+ A  H NR AT+F+E G E++L+ LAERV++RHP+ GYMR TI  Y DL+R+APG+G +AHILAVA ISNGSAKTFERN KLL  MG VLN ADFF TA  +EAGLG+  PA  SA
Sbjct:  145 PPPGCSGRQRLAFDQSHHVH---RQPPPPLPGVPPSYAVHHANRNATQFNE-GTEDLLDTLAERVLVRHPSVGYMRMTIAVYLDLKRRAPGKGALAHILAVARISNGSAKTFERNTKLLEDMGTVLNEADFFTTASRLEAGLGTAAPAAISA 292
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BLAST of mRNA_E-fasciculatus_F_contig16383.4324.1 vs. uniprot
Match: D7G603_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G603_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 1.620e-17
Identity = 50/97 (51.55%), Postives = 66/97 (68.04%), Query Frame = 1 
Query:    1 PPPTGPGRQNPLYRQSHQHHVPGQTQPFPSAHPPPTPAPQHPNRTATRFSEAGVEEVLNILAERVIMRHPTAGYMRTTIQSYQDLRRQAPGRGQVAH 291
            PPP G GRQ   + QSH  H   +  P P    PP+ A  H NR AT+F+E G+E++L+ LAERV++RHP+ GYMR TI  Y DL+R+APG+G +AH
Sbjct:  144 PPPGGSGRQRLAFDQSHHVH---RQPPPPLPGVPPSYAVHHANRNATQFNE-GIEDLLDTLAERVLVRHPSVGYMRMTIAVYLDLKRRAPGKGALAH 236
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16383.4324.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5U4_ECTSI4.580e-4058.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G603_ECTSI1.620e-1751.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16383contigE-fasciculatus_F_contig16383:76..1274 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size516
Cds size516
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16383.4324.1prot_E-fasciculatus_F_contig16383.4324.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16383 76..1274 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928108.2088537-CDS-E-fasciculatus_F_contig16383:75..2291622928108.2088537-CDS-E-fasciculatus_F_contig16383:75..229Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16383 76..229 +
1695995822.3058016-CDS-E-fasciculatus_F_contig16383:75..2291695995822.3058016-CDS-E-fasciculatus_F_contig16383:75..229Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16383 76..229 +
1622928108.2238407-CDS-E-fasciculatus_F_contig16383:543..7301622928108.2238407-CDS-E-fasciculatus_F_contig16383:543..730Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16383 544..730 +
1695995822.3175035-CDS-E-fasciculatus_F_contig16383:543..7301695995822.3175035-CDS-E-fasciculatus_F_contig16383:543..730Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16383 544..730 +
1622928108.2407072-CDS-E-fasciculatus_F_contig16383:1099..12741622928108.2407072-CDS-E-fasciculatus_F_contig16383:1099..1274Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16383 1100..1274 +
1695995822.3267515-CDS-E-fasciculatus_F_contig16383:1099..12741695995822.3267515-CDS-E-fasciculatus_F_contig16383:1099..1274Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16383 1100..1274 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16383.4324.1

>prot_E-fasciculatus_F_contig16383.4324.1 ID=prot_E-fasciculatus_F_contig16383.4324.1|Name=mRNA_E-fasciculatus_F_contig16383.4324.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=172bp
PPPTGPGRQNPLYRQSHQHHVPGQTQPFPSAHPPPTPAPQHPNRTATRFS
EAGVEEVLNILAERVIMRHPTAGYMRTTIQSYQDLRRQAPGRGQVAHILA
VANISNGSAKTFERNAKLLGAMGAVLNHADFFMTARSIEAGLGSDGPADA
SAAAHAGNSASAQANESSDGT*
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mRNA from alignment at E-fasciculatus_F_contig16383:76..1274+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16383.4324.1 ID=mRNA_E-fasciculatus_F_contig16383.4324.1|Name=mRNA_E-fasciculatus_F_contig16383.4324.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1199bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16383:76..1274+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCCCCCCCACCGGGCCTGGACGTCAGAACCCCTTATACCGCCAGTCCCA
CCAACATCATGTTCCCGGGCAGACCCAGCCGTTTCCGTCAGCCCACCCAC
CTCCTACTCCTGCCCCGCAGCACCCCAACCGGACAGCGACCAGATTCAGC
GAAGGTGCGAGCCTCGCGTTTGGCTTTCCGAACGAGCCGGTGAACTCCTG
GCGGTGCCTCACATAGTCCTCAACGCCTGCAGCTTGGACGGTTTCCTTTG
TCTGGAGCTATAATATAATGGAGCTATAATCCAATCGACCCTCGCTTGGG
TAAACGCAAGTTTGTAGACGTTCGAGCCGAGGAAACTGTTGCAACTCTAG
CCAGTCGTAGTAGGTCGGGCAATTGTCGTGTTACACTGTACCGCCCCGAT
GCTATGTCTTGTCGAAAATGTCCCGTTTACTAACTCCACACGCCCGTCGG
CCGTCATATTGCAACTAGCAGGGGTCGAGGAAGTCCTCAACATACTGGCC
GAACGAGTCATAATGAGGCATCCCACGGCGGGATACATGCGGACCACTAT
CCAGTCATACCAAGACCTGAGGCGACAAGCACCAGGACGCGGGCAGGTGG
CGCACATCCTGGCCGTGGCAAACATCTCGAACGGAAGCGCGAAGACATTC
GAAAGGTACAGCCGGTTTGTGACACAGGTTTAGCCTTTTGAAAAGGCCTG
TCCGTGCCCGTAAAATGTTCACGCCGAACGTTACCTTCCACGATTTCGAT
TCGGAGACGAGAGCACGGCGCCACCTACGCTGGTTTTGGGATTGCGCTGG
AATGTATTTTGTCCCCGGGCAATCCCGTGGACCTTTCTTTGTGATTTTAC
AGCGTTTTGTCCACAACCCCATTCTGTTGCCTCTACTGACATAGCGCCGT
CTCGCACCCTCGCGGCGATCGTCACGCTGCCGCATCCAGTGACGACGTGC
GAGTACTATCGTATATAAGAACTAACATGCATGTAAATATCTCGTGCTCG
CCCTTGGGTCTGCTTGCAAATCAGGAACGCTAAACTACTGGGAGCAATGG
GCGCGGTGTTGAATCATGCTGATTTTTTCATGACTGCGAGGAGTATCGAA
GCGGGTCTCGGGTCCGACGGGCCGGCCGACGCAAGCGCTGCTGCGCACGC
TGGAAATAGTGCGTCTGCTCAGGCAAATGAGTCTTCAGACGGGACGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16383:76..1274+

>mRNA_E-fasciculatus_F_contig16383.4324.1 ID=mRNA_E-fasciculatus_F_contig16383.4324.1|Name=mRNA_E-fasciculatus_F_contig16383.4324.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1032bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16383:76..1274+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCCCCCCCACCGGGCCTGGACGTCAGAACCCCTTATACCGCCAGTCCCA
CCAACATCATGTTCCCGGGCAGACCCAGCCGTTTCCGTCAGCCCACCCAC
CTCCTACTCCTGCCCCGCAGCACCCCAACCGGACAGCGACCAGATTCAGC
GAAGCCCCCCCCCACCGGGCCTGGACGTCAGAACCCCTTATACCGCCAGT
CCCACCAACATCATGTTCCCGGGCAGACCCAGCCGTTTCCGTCAGCCCAC
CCACCTCCTACTCCTGCCCCGCAGCACCCCAACCGGACAGCGACCAGATT
CAGCGAAGCAGGGGTCGAGGAAGTCCTCAACATACTGGCCGAACGAGTCA
TAATGAGGCATCCCACGGCGGGATACATGCGGACCACTATCCAGTCATAC
CAAGACCTGAGGCGACAAGCACCAGGACGCGGGCAGGTGGCGCACATCCT
GGCCGTGGCAAACATCTCGAACGGAAGCGCGAAGACATTCGAAAGCAGGG
GTCGAGGAAGTCCTCAACATACTGGCCGAACGAGTCATAATGAGGCATCC
CACGGCGGGATACATGCGGACCACTATCCAGTCATACCAAGACCTGAGGC
GACAAGCACCAGGACGCGGGCAGGTGGCGCACATCCTGGCCGTGGCAAAC
ATCTCGAACGGAAGCGCGAAGACATTCGAAAGGAACGCTAAACTACTGGG
AGCAATGGGCGCGGTGTTGAATCATGCTGATTTTTTCATGACTGCGAGGA
GTATCGAAGCGGGTCTCGGGTCCGACGGGCCGGCCGACGCAAGCGCTGCT
GCGCACGCTGGAAATAGTGCGTCTGCTCAGGCAAATGAGTCTTCAGACGG
GACGTGAGAACGCTAAACTACTGGGAGCAATGGGCGCGGTGTTGAATCAT
GCTGATTTTTTCATGACTGCGAGGAGTATCGAAGCGGGTCTCGGGTCCGA
CGGGCCGGCCGACGCAAGCGCTGCTGCGCACGCTGGAAATAGTGCGTCTG
CTCAGGCAAATGAGTCTTCAGACGGGACGTGA
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