mRNA_E-fasciculatus_F_contig16380.4322.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16380.4322.1
Unique NamemRNA_E-fasciculatus_F_contig16380.4322.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig16380.4322.1 vs. uniprot
Match: D7FSE5_ECTSI (Casein kinase II subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSE5_ECTSI)

HSP 1 Score: 278 bits (712), Expect = 1.390e-89
Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = 1
Query:    1 AADEPQDPVVAQSAFMLYGMIHARFIVTARGLEAMYKKYRLAEFGRCPRTMCKNQPVVPVGIFDEPKKEAVKLYCPRCNDVYNTVSPYGGEPLDGAFFGTSFAHLFFITFDRLVPDPARSSYTPLIFGFKIHK 399
            AADEPQDPVVAQSAFMLYGMIHARFIVTARGLEAMYKKYRLAEFGRCPRTMCKNQPVVPVGIFDEPKKEAVKLYCPRC DVYNTVSPYGGEPLDGAFFGTSFAHLFFITFDRLVPDPARSSYTPLIFGFKIHK
Sbjct:   38 AADEPQDPVVAQSAFMLYGMIHARFIVTARGLEAMYKKYRLAEFGRCPRTMCKNQPVVPVGIFDEPKKEAVKLYCPRCCDVYNTVSPYGGEPLDGAFFGTSFAHLFFITFDRLVPDPARSSYTPLIFGFKIHK 170          
BLAST of mRNA_E-fasciculatus_F_contig16380.4322.1 vs. uniprot
Match: A0A6H5KX78_9PHAE (Casein kinase II subunit beta n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX78_9PHAE)

HSP 1 Score: 278 bits (712), Expect = 5.310e-88
Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = 1
Query:    1 AADEPQDPVVAQSAFMLYGMIHARFIVTARGLEAMYKKYRLAEFGRCPRTMCKNQPVVPVGIFDEPKKEAVKLYCPRCNDVYNTVSPYGGEPLDGAFFGTSFAHLFFITFDRLVPDPARSSYTPLIFGFKIHK 399
            AADEPQDPVVAQSAFMLYGMIHARFIVTARGLEAMYKKYRLAEFGRCPRTMCKNQPVVPVGIFDEPKKEAVKLYCPRC DVYNTVSPYGGEPLDGAFFGTSFAHLFFITFDRLVPDPARSSYTPLIFGFKIHK
Sbjct:   72 AADEPQDPVVAQSAFMLYGMIHARFIVTARGLEAMYKKYRLAEFGRCPRTMCKNQPVVPVGIFDEPKKEAVKLYCPRCCDVYNTVSPYGGEPLDGAFFGTSFAHLFFITFDRLVPDPARSSYTPLIFGFKIHK 204          
BLAST of mRNA_E-fasciculatus_F_contig16380.4322.1 vs. uniprot
Match: A0A6V1P2G8_HETAK (Casein kinase II subunit beta n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P2G8_HETAK)

HSP 1 Score: 186 bits (472), Expect = 1.430e-55
Identity = 79/132 (59.85%), Postives = 104/132 (78.79%), Query Frame = 1
Query:    1 AADEPQDPVVAQSAFMLYGMIHARFIVTARGLEAMYKKYRLAEFGRCPRTMCKNQPVVPVGIFDEPKKEAVKLYCPRCNDVYNTVSPYGGEPLDGAFFGTSFAHLFFITFDRLVPDPARSSYTPLIFGFKIH 396
            + D+  DP++AQ+A++LYG+IHARFI T+RGLE MYKKYR  +FGRCPR +CK+Q VVP GI+D P KE VK+YCP+C  VY   +  G + LDG+FFGT+F HLFF+TF+RL+P+P   +Y P +FGFKIH
Sbjct:   63 SVDDNLDPMMAQAAYLLYGLIHARFITTSRGLEVMYKKYRTGDFGRCPRMLCKDQFVVPAGIYDHPNKEKVKVYCPKCGQVYGVPTNPGEQGLDGSFFGTTFPHLFFLTFNRLIPEPCTETYIPRVFGFKIH 194          
BLAST of mRNA_E-fasciculatus_F_contig16380.4322.1 vs. uniprot
Match: A0A1W0AB01_9STRA (Casein kinase II subunit beta n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0AB01_9STRA)

HSP 1 Score: 160 bits (406), Expect = 6.480e-47
Identity = 68/131 (51.91%), Postives = 92/131 (70.23%), Query Frame = 1
Query:    7 DEPQDPVVAQSAFMLYGMIHARFIVTARGLEAMYKKYRLAEFGRCPRTMCKNQPVVPVGIFDEPKKEAVKLYCPRCNDVYNTVSPYGGEPLDGAFFGTSFAHLFFITFDRLVPDPARSSYTPLIFGFKIHK 399
            D P D  V   A  LYG+IHAR+I+T+ GL+AM KKYR AEFG CPR +C  QPVVP G++DEP+K  +K+YCP+C D+Y     +    +DGA+FG++F HLFF+T+  L P P+   Y P +FG+KIH+
Sbjct:   65 DIPYDDDVPSCAVELYGLIHARYIITSHGLDAMLKKYREAEFGYCPRALCDGQPVVPAGMYDEPRKAEMKVYCPKCRDLYTPAIDFESATIDGAYFGSTFPHLFFLTYSNLEPAPSTHLYVPRVFGYKIHR 195          
BLAST of mRNA_E-fasciculatus_F_contig16380.4322.1 vs. uniprot
Match: T0S4R1_SAPDV (Casein kinase II subunit beta n=4 Tax=Saprolegnia TaxID=4769 RepID=T0S4R1_SAPDV)

HSP 1 Score: 160 bits (405), Expect = 1.430e-46
Identity = 68/131 (51.91%), Postives = 92/131 (70.23%), Query Frame = 1
Query:    7 DEPQDPVVAQSAFMLYGMIHARFIVTARGLEAMYKKYRLAEFGRCPRTMCKNQPVVPVGIFDEPKKEAVKLYCPRCNDVYNTVSPYGGEPLDGAFFGTSFAHLFFITFDRLVPDPARSSYTPLIFGFKIHK 399
            D P D  V   A  LYG+IHAR+I+T+ GL+AM KKYR AEFG CPR +C  QPVVP G++DEP+K  +K+YCP+C D+Y     +    +DGA+FG++F HLFF+T+  L P P+   Y P +FG+KIH+
Sbjct:   71 DIPYDEDVPSCAVELYGLIHARYIITSHGLDAMLKKYREAEFGYCPRALCDGQPVVPAGMYDEPRKAEMKVYCPKCRDLYTPAIDFESATIDGAYFGSTFPHLFFMTYSNLEPAPSTHLYVPRVFGYKIHR 201          
BLAST of mRNA_E-fasciculatus_F_contig16380.4322.1 vs. uniprot
Match: A0A1V9YMX9_9STRA (Casein kinase II subunit beta n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YMX9_9STRA)

HSP 1 Score: 160 bits (404), Expect = 1.490e-46
Identity = 68/131 (51.91%), Postives = 92/131 (70.23%), Query Frame = 1
Query:    7 DEPQDPVVAQSAFMLYGMIHARFIVTARGLEAMYKKYRLAEFGRCPRTMCKNQPVVPVGIFDEPKKEAVKLYCPRCNDVYNTVSPYGGEPLDGAFFGTSFAHLFFITFDRLVPDPARSSYTPLIFGFKIHK 399
            D P D  V   A  LYG+IHAR+I+T+ GL+AM KKYR AEFG CPR +C  QPVVP G++DEP+K  +K+YCP+C D+Y     +    +DGA+FG++F HLFF+T+  L P P+   Y P +FG+KIH+
Sbjct:   68 DIPYDDDVPSCAVELYGLIHARYIITSHGLDAMLKKYREAEFGYCPRALCDGQPVVPAGMYDEPRKAEMKVYCPKCRDLYTPAIDFESATIDGAYFGSTFPHLFFMTYSNLEPAPSTHLYIPRVFGYKIHR 198          
BLAST of mRNA_E-fasciculatus_F_contig16380.4322.1 vs. uniprot
Match: A0A8K1C3U2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C3U2_PYTOL)

HSP 1 Score: 159 bits (402), Expect = 1.800e-46
Identity = 70/130 (53.85%), Postives = 92/130 (70.77%), Query Frame = 1
Query:    7 DEPQDPVVAQSAFMLYGMIHARFIVTARGLEAMYKKYRLAEFGRCPRTMCKNQPVVPVGIFDEPKKEAVKLYCPRCNDVYNTVSPYGGEPLDGAFFGTSFAHLFFITFDRLVPDPARSSYTPLIFGFKIH 396
            D P D  V   A  LYGMIHAR+I+T+ GL++M KKYR  +FG CPR +C+ QPVVP G+ DE KK  +K++CP+C D+Y  V+ Y   P+DGA+FGT+F HLFF+T+  L P P+   Y P IFG+KIH
Sbjct:   60 DIPYDDDVPACAAELYGMIHARYIITSHGLDSMMKKYRDRDFGVCPRALCEGQPVVPAGMHDEWKKSEMKVFCPKCRDLYTPVTEYNSPPIDGAYFGTTFPHLFFMTYRELEPPPSTVIYVPRIFGYKIH 189          
BLAST of mRNA_E-fasciculatus_F_contig16380.4322.1 vs. uniprot
Match: A0A6G0XTG7_9STRA (Casein kinase II subunit beta n=8 Tax=Aphanomyces TaxID=100860 RepID=A0A6G0XTG7_9STRA)

HSP 1 Score: 157 bits (397), Expect = 1.290e-45
Identity = 67/131 (51.15%), Postives = 91/131 (69.47%), Query Frame = 1
Query:    7 DEPQDPVVAQSAFMLYGMIHARFIVTARGLEAMYKKYRLAEFGRCPRTMCKNQPVVPVGIFDEPKKEAVKLYCPRCNDVYNTVSPYGGEPLDGAFFGTSFAHLFFITFDRLVPDPARSSYTPLIFGFKIHK 399
            D P D  V   A  LYG+IHAR+I+T+ GLEAM KK+R  +FG CPR +C  QPVVP G++DEPKK  +K+YCP+C D+Y     +    +DGA+FG++F HLFF+T+  L P P+   Y P +FG+KIH+
Sbjct:   67 DIPYDDDVPSCAAELYGLIHARYIITSHGLEAMLKKFRDGDFGFCPRALCDGQPVVPAGMYDEPKKAEMKVYCPKCRDLYTPSVDFESTTIDGAYFGSTFPHLFFLTYSNLEPPPSTHLYVPRVFGYKIHR 197          
BLAST of mRNA_E-fasciculatus_F_contig16380.4322.1 vs. uniprot
Match: F0WPG1_9STRA (Casein kinase II subunit beta n=2 Tax=Albugo TaxID=65356 RepID=F0WPG1_9STRA)

HSP 1 Score: 155 bits (392), Expect = 7.110e-45
Identity = 71/131 (54.20%), Postives = 92/131 (70.23%), Query Frame = 1
Query:    7 DEPQDPVVAQSAFMLYGMIHARFIVTARGLEAMYKKYRLAEFGRCPRTMCKNQPVVPVGIFDEPKKEAVKLYCPRCNDVYNTVSPYGGEPLDGAFFGTSFAHLFFITFDRLVPDPARSSYTPLIFGFKIHK 399
            D P D  V   A  LYGMIHAR+I+T+ GL+ M +KYR  +FG CPR +C NQ VVP G+ DE KK  +KL+CP+C D+Y   + Y   PLDGA+FG++F HLFF+T+  L P P+ + YTP IFG+KIHK
Sbjct:   60 DIPYDEDVPPYAAELYGMIHARYILTSHGLDTMLQKYREGDFGVCPRALCANQSVVPAGLHDEWKKSEMKLFCPKCCDLYAPPTEYEIAPLDGAYFGSTFPHLFFLTYKELEPTPSTALYTPRIFGYKIHK 190          
BLAST of mRNA_E-fasciculatus_F_contig16380.4322.1 vs. uniprot
Match: A0A816MM18_BRANA (Casein kinase II subunit beta n=3 Tax=Brassica TaxID=3705 RepID=A0A816MM18_BRANA)

HSP 1 Score: 151 bits (382), Expect = 8.350e-45
Identity = 67/130 (51.54%), Postives = 90/130 (69.23%), Query Frame = 1
Query:   10 EPQDPVVAQSAFMLYGMIHARFIVTARGLEAMYKKYRLAEFGRCPRTMCKNQPVVPVGIFDEPKKEAVKLYCPRCNDVYNTVSPYGGEPLDGAFFGTSFAHLFFITFDRLVPDPARSSYTPLIFGFKIHK 399
            E Q+ ++  +A MLYG+IHAR+I+T +GL AM  KY+  +FGRCPR  C  QP +PVG+ D P+   VK+YCP+C D+Y   S Y G  +DGAFFGT+F HLF +T+  L P  A  +Y P +FGFK+HK
Sbjct:    4 EEQNELIESAAEMLYGLIHARYILTTKGLAAMLDKYKNYDFGRCPRVYCCGQPCLPVGLSDLPRSSTVKIYCPKCQDIYYPRSKYQGN-IDGAFFGTTFPHLFLMTYGHLKPPKATQNYVPRVFGFKLHK 132          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16380.4322.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSE5_ECTSI1.390e-8999.25Casein kinase II subunit beta n=1 Tax=Ectocarpus s... [more]
A0A6H5KX78_9PHAE5.310e-8899.25Casein kinase II subunit beta n=1 Tax=Ectocarpus s... [more]
A0A6V1P2G8_HETAK1.430e-5559.85Casein kinase II subunit beta n=1 Tax=Heterosigma ... [more]
A0A1W0AB01_9STRA6.480e-4751.91Casein kinase II subunit beta n=1 Tax=Thraustothec... [more]
T0S4R1_SAPDV1.430e-4651.91Casein kinase II subunit beta n=4 Tax=Saprolegnia ... [more]
A0A1V9YMX9_9STRA1.490e-4651.91Casein kinase II subunit beta n=1 Tax=Achlya hypog... [more]
A0A8K1C3U2_PYTOL1.800e-4653.85Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6G0XTG7_9STRA1.290e-4551.15Casein kinase II subunit beta n=8 Tax=Aphanomyces ... [more]
F0WPG1_9STRA7.110e-4554.20Casein kinase II subunit beta n=2 Tax=Albugo TaxID... [more]
A0A816MM18_BRANA8.350e-4551.54Casein kinase II subunit beta n=3 Tax=Brassica Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16380contigE-fasciculatus_F_contig16380:85..2602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score280.4
Seed ortholog evalue4.4e-73
Seed eggNOG ortholog2880.D7FSE5
KEGG koko:K03115
KEGG Pathwayko03008,ko04064,ko04137,ko04139,ko04310,ko04520,ko04712,ko05162,ko05168,ko05169,map03008,map04064,map04137,map04139,map04310,map04520,map04712,map05162,map05168,map05169
EggNOG free text desc.protein kinase regulator activity
EggNOG OGsCOG5041@1,KOG3092@2759
COG Functional cat.DKT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCasein kinase II, regulatory subunit
Ec32 orthologEc-25_000900.1
Exons4
Model size402
Cds size402
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16380.4322.1prot_E-fasciculatus_F_contig16380.4322.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16380 85..2602 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928108.0038667-CDS-E-fasciculatus_F_contig16380:84..1891622928108.0038667-CDS-E-fasciculatus_F_contig16380:84..189Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16380 85..189 +
1695995822.1910331-CDS-E-fasciculatus_F_contig16380:84..1891695995822.1910331-CDS-E-fasciculatus_F_contig16380:84..189Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16380 85..189 +
1622928108.0189664-CDS-E-fasciculatus_F_contig16380:1085..11571622928108.0189664-CDS-E-fasciculatus_F_contig16380:1085..1157Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16380 1086..1157 +
1695995822.2118073-CDS-E-fasciculatus_F_contig16380:1085..11571695995822.2118073-CDS-E-fasciculatus_F_contig16380:1085..1157Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16380 1086..1157 +
1622928108.0371194-CDS-E-fasciculatus_F_contig16380:1594..16911622928108.0371194-CDS-E-fasciculatus_F_contig16380:1594..1691Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16380 1595..1691 +
1695995822.2254953-CDS-E-fasciculatus_F_contig16380:1594..16911695995822.2254953-CDS-E-fasciculatus_F_contig16380:1594..1691Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16380 1595..1691 +
1622928108.0507405-CDS-E-fasciculatus_F_contig16380:2474..26021622928108.0507405-CDS-E-fasciculatus_F_contig16380:2474..2602Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16380 2475..2602 +
1695995822.2375329-CDS-E-fasciculatus_F_contig16380:2474..26021695995822.2375329-CDS-E-fasciculatus_F_contig16380:2474..2602Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16380 2475..2602 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16380.4322.1

>prot_E-fasciculatus_F_contig16380.4322.1 ID=prot_E-fasciculatus_F_contig16380.4322.1|Name=mRNA_E-fasciculatus_F_contig16380.4322.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=134bp
AADEPQDPVVAQSAFMLYGMIHARFIVTARGLEAMYKKYRLAEFGRCPRT
MCKNQPVVPVGIFDEPKKEAVKLYCPRCNDVYNTVSPYGGEPLDGAFFGT
SFAHLFFITFDRLVPDPARSSYTPLIFGFKIHK*
back to top

mRNA from alignment at E-fasciculatus_F_contig16380:85..2602+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16380.4322.1 ID=mRNA_E-fasciculatus_F_contig16380.4322.1|Name=mRNA_E-fasciculatus_F_contig16380.4322.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2518bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16380:85..2602+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCTGCGGACGAGCCCCAAGATCCGGTGGTTGCTCAGTCAGCCTTCATGCT CTACGGCATGATTCACGCCCGCTTCATCGTCACCGCAAGGGGGCTCGAAG CCATGGTGCGGTGTGTTGGATGGTGCTGCCTCCGTCGTGCTCTGTTGTCC ATCTGTTGTCGCTTGCTCTAGCGTTGTTTTTGTTGTTTGTTTTTGCTCTT TTGTCGGACGGCGTGATCCACGCAGTGGGGTGAGCAATACCAGGTGGCCT GGTCCCACCCACTACTGTATGTGATTTACTTCCAACGATATATTGTAGTG GATTCAAGGCATGCAATTACATGTAGCCCTATATGATCAAAAATATTTAG CATCAATCATTAGTAATCCGTAAGTTTTTTGGGATTAAGTGTGGGGTTGG AGGCACATGCAGACACCCAGCAGTAGTCTCAGGCCTTGCATGTCTCACTG GACCCTCAAGTTAAAGGTAGGACTATCCTAGGCTGCCATGACACCTGCAC GACCAACCTGTGTTGCGCTGGAGGAGGTTGAAACAAGTCCCTCCTATTAT GTTGTTCCGATGCCGAGAGTGCTTAGCTGTGTCGCCGAGCGAGGTTTCCA ACTTTTCCCGCGTCCTGCGATATAGCGGCAGCACGTTGCGAACAGGAGTA TACTAGAATTCTAGCGCATGCCCTTAAACAGAACGTTTGTTTCTTGACCA AAAGGCGACGGGGAAGTAAAAGGCGGCGGCAAGATCCACTGAGGTGGCTC ACGGGAGCTGGAAAGGTCTTGGGAACAGCGTCTCGCCCTACGGAGTCGTG CCCCCTCAACCCTCGTTCGTTTTTTCAGCATATCACCCGAAGGAGGCAGC GTTCCTTTCTGACGTCCCACATCGGTGGACTTTTTCATTAACCTGGCTGG CGAAAACCCGGCGTGCTCCGTCCCGGCTTTGTAGGGATGCGAGGTCTACG ACTACGGCATGCATGATACTGAGTACACCCCCCCCCCCCTATTTTTTTCA GTACAAGAAGTACCGTCTGGCGGAGTTCGGGAGATGTCCAAGGACCATGT GCAAGAATCAACCGGTCGTGCCGGTAAGAATCTCACAATCTCACGCTTCA AATGCTTCAAATTTGTCGAGTATGGTTTGTCGACGAGCGAACAGCCAGCC GGGGTAGGGCATCTGACGCTCGGCATCTGATGGTCACACATCACTTCCTC TGCTTCGTGACGCTGTGCGTTGGGCTTGTGGCGTTTGTGCTCTACGAGCA TCGTGTTGTCTCGCGGTGCCTACTGCAAGCCAAAATACCTGTTTGCGTCT GTCTCATGCGGACTAGCGTGTGCTTAGTCGTAGCATACGAAGGTCCTTTG TTTTGTTGCATTCATGAGTGTTAAAATTGCAACATACATGATTTGTCCTT CTGTCTGTGTGCCTGGTTTGTCTGATCTGTCTGCCTGCTTGCCTGCCTCT CTGTCGCGTTTATTTTTATTTTCTGTCTTGTCTGTGTCTCCCCTCCGAAC CCGACAACAGGTGGGCATTTTCGACGAGCCGAAGAAGGAGGCGGTGAAGC TCTACTGCCCGCGGTGCAACGACGTGTACAACACCGTCAGTCCCTACGGT GGTGAACGTGAGTGACAAGATAAGACAAGATAAGAAACGATAAGACACGA CAAGACACGGTAAGACACGATAAGACACGATAAGACACGACAAGACACGA TAAGACACGGTAAGACACGATAAGACACGACACCCATGCGCCGCCACTTC CGTCTCTAAGCCCCCACGGGACGCAGGGAAGCCACCAACACACCTCCAGC AAGCATTTGTTTTTGTCGACGAACGCTTTTTTTTTGTCATTTTTTTTTGT TGATCTGGCGGCGCAGTGTAGCCGTCAATCTGATTTGTTACATCGTGGTT TTGATGTCCTGACTGCTGGTTCCTTTTGGTGGTTGTTTTTTTTTCTTCCT TTCTGTGTAACACCTGTGTGCTTTGGGTCCCCGGACAGGGGGGCGGGGGA GGAAACTACGCTGAAGGGTCCGTCCATCCAAGCTACTAACTGAATATGGA TGTCTGCAAAACACAACGCCACCTCGAAGCAGTCTTGCTCCTGGTAGCTC AATTCTTCATGGCTTGCGAGCTCGCGCGTTGTTTCCGTGCGTGCAATATT TCAATATGTTTTCAGGTTGGTCGAAACTTTACACTTTTGTGACATTTCTG CTGGGCTTGGGTTTGTTTTTTACTTGCTTTGTTTTCACAAAATGGAATCA CAAAATGTAATACATACAACCACAGAAGATTTACACGTGCAAAGCAAATC CCACAGCAGTCGCAGCGGATGTGCTGAAGTCTTTGCAGTGAGCCGGAGAA TAACTGGGCTATTTTTTTTGCCCTTTTTTTTCCTTCGCAGCGTTGGATGG CGCATTCTTCGGCACCTCCTTCGCACACCTGTTCTTCATCACGTTCGACA GGCTCGTGCCCGACCCGGCTAGGTCTAGCTACACCCCTCTCATCTTCGGC TTCAAGATCCACAAGTGA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16380:85..2602+

>mRNA_E-fasciculatus_F_contig16380.4322.1 ID=mRNA_E-fasciculatus_F_contig16380.4322.1|Name=mRNA_E-fasciculatus_F_contig16380.4322.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=804bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16380:85..2602+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCTGCGGACGAGCCCCAAGATCCGGTGGTTGCTCAGTCAGCCTTCATGCT
CTACGGCATGATTCACGCCCGCTTCATCGTCACCGCAAGGGGGCTCGAAG
CCATGGCTGCGGACGAGCCCCAAGATCCGGTGGTTGCTCAGTCAGCCTTC
ATGCTCTACGGCATGATTCACGCCCGCTTCATCGTCACCGCAAGGGGGCT
CGAAGCCATGTACAAGAAGTACCGTCTGGCGGAGTTCGGGAGATGTCCAA
GGACCATGTGCAAGAATCAACCGGTCGTGCCGTACAAGAAGTACCGTCTG
GCGGAGTTCGGGAGATGTCCAAGGACCATGTGCAAGAATCAACCGGTCGT
GCCGGTGGGCATTTTCGACGAGCCGAAGAAGGAGGCGGTGAAGCTCTACT
GCCCGCGGTGCAACGACGTGTACAACACCGTCAGTCCCTACGGTGGTGAA
CGTGGGCATTTTCGACGAGCCGAAGAAGGAGGCGGTGAAGCTCTACTGCC
CGCGGTGCAACGACGTGTACAACACCGTCAGTCCCTACGGTGGTGAACCG
TTGGATGGCGCATTCTTCGGCACCTCCTTCGCACACCTGTTCTTCATCAC
GTTCGACAGGCTCGTGCCCGACCCGGCTAGGTCTAGCTACACCCCTCTCA
TCTTCGGCTTCAAGATCCACAAGTGACGTTGGATGGCGCATTCTTCGGCA
CCTCCTTCGCACACCTGTTCTTCATCACGTTCGACAGGCTCGTGCCCGAC
CCGGCTAGGTCTAGCTACACCCCTCTCATCTTCGGCTTCAAGATCCACAA
GTGA
back to top