mRNA_E-fasciculatus_F_contig16377.4319.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16377.4319.1
Unique NamemRNA_E-fasciculatus_F_contig16377.4319.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16377.4319.1 vs. uniprot
Match: A0A835Z8N4_9STRA (Phosphatase 2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8N4_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.510e-25
Identity = 46/85 (54.12%), Postives = 62/85 (72.94%), Query Frame = 1 
Query:   46 CGAPDDGPLQLVCLVAASDGVWDNWLYGDVSAFFLDPVRAKEVVETNNAEGVTEAFMRENARRAHANFGSQADNSTCVACYLIVT 300
            CGAP +    + C+VA SDG+WDNW + +V +FFL P R  +VV + ++EG+ E FM EN RRAHANFG QADN+T +ACY+ +T
Sbjct:  324 CGAPQE---MVSCIVACSDGIWDNWAWNEVGSFFLAPERVAQVVSSGSSEGIIEEFMAENLRRAHANFGDQADNATAIACYVFMT 405
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BLAST of mRNA_E-fasciculatus_F_contig16377.4319.1 vs. uniprot
Match: A0A7S3GP93_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GP93_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 2.210e-13
Identity = 35/72 (48.61%), Postives = 46/72 (63.89%), Query Frame = 1 
Query:   79 VCLVAASDGVWDNWLYGDVSAFFLDPVRAKEV-VETNNAEGVTEAFMRENARRAHANFGSQADNSTCVACYL 291
            +CLV A+DGVWDNWLY DV+ F +D      V    + A+ VT +FM+ NA  A  NFGS ADN+T +  Y+
Sbjct:   20 LCLVLATDGVWDNWLYEDVNKFVMDASCLGAVGAAADGAKRVTISFMQRNALYAKRNFGSNADNATGIVLYI 91
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BLAST of mRNA_E-fasciculatus_F_contig16377.4319.1 vs. uniprot
Match: A0A6C0I0V0_9ZZZZ (PPM-type phosphatase domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0I0V0_9ZZZZ)

HSP 1 Score: 74.3 bits (181), Expect = 2.440e-13
Identity = 35/73 (47.95%), Postives = 47/73 (64.38%), Query Frame = 1 
Query:   76 LVCLVAASDGVWDNWLYGDVSAFFLDPVRAKEVVE-TNNAEGVTEAFMRENARRAHANFGSQADNSTCVACYL 291
            ++CLV A+DGVWDNWLY DVS F LD    K V E  + A+ V  +F++ NA  +  NFG  ADN+T +  Y+
Sbjct:  411 MLCLVLATDGVWDNWLYADVSRFVLDATCLKAVSEGADGAQRVALSFIQRNAHYSKKNFGRSADNATAIVMYI 483
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BLAST of mRNA_E-fasciculatus_F_contig16377.4319.1 vs. uniprot
Match: A0A7R9YAD0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YAD0_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 2.350e-11
Identity = 35/77 (45.45%), Postives = 43/77 (55.84%), Query Frame = 1 
Query:   85 LVAASDGVWDNWLYGDVSAFFLDPVRAKEVVETNNAEGVTEA---FMRENARRAHANFGSQADNSTCVACYLIVTLD 306
            +VAASDG+WDNW++ D  AF L              EG   A    M EN RRA  NFGSQADN+TC   +L V ++
Sbjct:  226 IVAASDGIWDNWVFSDCMAFVLGDAEKSLFAHGLTGEGNVRANQRLMAENKRRAVENFGSQADNATCALAFLEVIVN 302
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BLAST of mRNA_E-fasciculatus_F_contig16377.4319.1 vs. uniprot
Match: A0A7R9U469_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U469_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 3.530e-11
Identity = 35/77 (45.45%), Postives = 43/77 (55.84%), Query Frame = 1 
Query:   85 LVAASDGVWDNWLYGDVSAFFLDPVRAKEVVETNNAEGVTEA---FMRENARRAHANFGSQADNSTCVACYLIVTLD 306
            +VAASDG+WDNW++ D  AF L              EG   A    M EN RRA  NFGSQADN+TC   +L V ++
Sbjct:  382 IVAASDGIWDNWVFSDCMAFVLGDAEKSLFAHGLTGEGNVRANQRLMAENKRRAVENFGSQADNATCALAFLEVIVN 458
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BLAST of mRNA_E-fasciculatus_F_contig16377.4319.1 vs. uniprot
Match: A0A7S1U2X5_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U2X5_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 3.130e-10
Identity = 36/90 (40.00%), Postives = 50/90 (55.56%), Query Frame = 1 
Query:   58 DDGPLQLVCLVAASDGVWDNWLYGDVSAFFLDPVRAKEVVETNNAEGVT--------EAFMRENARRAHANFGSQADNSTCVACYLIVTL 303
            ++G      +VAASDG+WDNW++ D  A+ L  +        + AEG+T         A M EN RRA ANFGSQADN+T    ++ + L
Sbjct:  372 ENGERTGFAIVAASDGIWDNWVFSDCMAYALGDLEGSSC---SLAEGLTGEGNKRANSALMAENKRRAIANFGSQADNATSALAFIEIIL 458
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BLAST of mRNA_E-fasciculatus_F_contig16377.4319.1 vs. uniprot
Match: A0A6G0W517_9STRA (PPM-type phosphatase domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W517_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.110e-7
Identity = 32/69 (46.38%), Postives = 41/69 (59.42%), Query Frame = 1 
Query:   79 VCLVAASDGVWDNWLYGDVSAFFLDPVRAKEVVETNNAEGVTEAFMRENARRAHANFGSQADNSTCVAC 285
            +CLV ASDGVWD W Y  V+AFF     +++V    ++  + E FMR N  +A A F  QADN T V C
Sbjct:  297 MCLVVASDGVWDVWQYEQVAAFFTGS--SQDVEMALDSARICE-FMRMNHAKAQALFNGQADNMTAVVC 362
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16377.4319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A835Z8N4_9STRA1.510e-2554.12Phosphatase 2C-like domain-containing protein n=1 ... [more]
A0A7S3GP93_9STRA2.210e-1348.61Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A6C0I0V0_9ZZZZ2.440e-1347.95PPM-type phosphatase domain-containing protein n=1... [more]
A0A7R9YAD0_9STRA2.350e-1145.45Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7R9U469_9STRA3.530e-1145.45Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1U2X5_9STRA3.130e-1040.00Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A6G0W517_9STRA1.110e-746.38PPM-type phosphatase domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16377contigE-fasciculatus_F_contig16377:1757..2475 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.8
Seed ortholog evalue4.2e-07
Seed eggNOG ortholog112098.XP_008606724.1
EggNOG free text desc.Serine/threonine phosphatases, family 2C, catalytic domain
EggNOG OGs2E2NX@1,2S9VW@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size312
Cds size312
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928106.5651627-CDS-E-fasciculatus_F_contig16377:1756..20141622928106.5651627-CDS-E-fasciculatus_F_contig16377:1756..2014Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16377 1757..2014 +
1695995822.0782452-CDS-E-fasciculatus_F_contig16377:1756..20141695995822.0782452-CDS-E-fasciculatus_F_contig16377:1756..2014Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16377 1757..2014 +
1622928106.575948-CDS-E-fasciculatus_F_contig16377:2421..24751622928106.575948-CDS-E-fasciculatus_F_contig16377:2421..2475Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16377 2422..2475 +
1695995822.0907655-CDS-E-fasciculatus_F_contig16377:2421..24751695995822.0907655-CDS-E-fasciculatus_F_contig16377:2421..2475Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16377 2422..2475 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16377.4319.1prot_E-fasciculatus_F_contig16377.4319.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16377 1757..2475 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16377.4319.1

>prot_E-fasciculatus_F_contig16377.4319.1 ID=prot_E-fasciculatus_F_contig16377.4319.1|Name=mRNA_E-fasciculatus_F_contig16377.4319.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=104bp
MYPSLPSPSRRTTPFCGAPDDGPLQLVCLVAASDGVWDNWLYGDVSAFFL
DPVRAKEVVETNNAEGVTEAFMRENARRAHANFGSQADNSTCVACYLIVT
LDS*
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mRNA from alignment at E-fasciculatus_F_contig16377:1757..2475+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16377.4319.1 ID=mRNA_E-fasciculatus_F_contig16377.4319.1|Name=mRNA_E-fasciculatus_F_contig16377.4319.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=719bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16377:1757..2475+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTACCCTTCTCTTCCATCCCCCTCCCGTCGAACGACCCCATTCTGCGG
CGCCCCCGATGACGGTCCTTTGCAGCTGGTGTGTCTCGTGGCGGCATCGG
ATGGCGTGTGGGACAACTGGCTGTACGGGGACGTATCGGCGTTTTTCCTT
GACCCCGTGAGGGCGAAGGAGGTGGTCGAGACCAACAACGCTGAGGGGGT
GACGGAAGCGTTCATGAGGGAGAACGCGAGGAGGGCCCACGCCAACTTCG
GTTCGCAGGTGTGAGGTTTGGTGTTTGTTTCGTGTCGCGGGTAGTTTTTG
TGTCTGTTATTGCTGGTGCTGGTGGCGGTACTGCTGCTGCTGTGGTTGTT
GTTGTTGGTGGTGGTGCTGGTGGCGGCGATGGCGGTTTATCGCCGTGGCT
TGTTGTTTCGTCTGTTGTTCTTGCTGCTATTGTGGCGTCTGCTGTCGTTG
TCCTTGTCGTTGTTCTCGGCGACACTGTTGCTGTTGCTGCTGATTCTTGA
GGCGTTTTCGTCGTGGTCGTTATCTCCAACGGTAACACACACTAACCCTA
ACCCTAACCCTCCGCGGTGGCGTGCATATACTTCATGCCTCCACCGGGAT
GCTTGCGTTCCCACCATGCTTTGTCCCGGCCCTTGACTTGGCGGCGTTCT
CTCTCGCTTTCGCAGGCTGACAACTCAACATGTGTAGCGTGCTACCTTAT
CGTCACCCTTGACTCCTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16377:1757..2475+

>mRNA_E-fasciculatus_F_contig16377.4319.1 ID=mRNA_E-fasciculatus_F_contig16377.4319.1|Name=mRNA_E-fasciculatus_F_contig16377.4319.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=624bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16377:1757..2475+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTACCCTTCTCTTCCATCCCCCTCCCGTCGAACGACCCCATTCTGCGG
CGCCCCCGATGACGGTCCTTTGCAGCTGGTGTGTCTCGTGGCGGCATCGG
ATGGCGTGTGGGACAACTGGCTGTACGGGGACGTATCGGCGTTTTTCCTT
GACCCCGTGAGGGCGAAGGAGGTGGTCGAGACCAACAACGCTGAGGGGGT
GACGGAAGCGTTCATGAGGGAGAACGCGAGGAGGGCCCACGCCAACTTCG
GTTCGCAGATGTACCCTTCTCTTCCATCCCCCTCCCGTCGAACGACCCCA
TTCTGCGGCGCCCCCGATGACGGTCCTTTGCAGCTGGTGTGTCTCGTGGC
GGCATCGGATGGCGTGTGGGACAACTGGCTGTACGGGGACGTATCGGCGT
TTTTCCTTGACCCCGTGAGGGCGAAGGAGGTGGTCGAGACCAACAACGCT
GAGGGGGTGACGGAAGCGTTCATGAGGGAGAACGCGAGGAGGGCCCACGC
CAACTTCGGTTCGCAGGCTGACAACTCAACATGTGTAGCGTGCTACCTTA
TCGTCACCCTTGACTCCTGAGCTGACAACTCAACATGTGTAGCGTGCTAC
CTTATCGTCACCCTTGACTCCTGA
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