mRNA_E-fasciculatus_F_contig16376.4318.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16376.4318.1
Unique NamemRNA_E-fasciculatus_F_contig16376.4318.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16376.4318.1 vs. uniprot
Match: D7G5S3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5S3_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 2.830e-40
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 1 
Query:    1 KVWLDKHWDDPALANVRDRLCLNGTASDQCAVPPAGFPHGSPDLWCQAKYDSDECTAIKAE 183
            +VWLDKHWDDPALANVRDRLCLNGTASDQCAVPPAGFPHGSPDLWCQAKYDSDECTAIKAE
Sbjct:   40 RVWLDKHWDDPALANVRDRLCLNGTASDQCAVPPAGFPHGSPDLWCQAKYDSDECTAIKAE 100
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BLAST of mRNA_E-fasciculatus_F_contig16376.4318.1 vs. uniprot
Match: D7G5S4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5S4_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 1.540e-32
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 1 
Query:  322 MQSMINYLLVFPVVGAIVMGYVQSLHRPMLEVLGLVDLHYVVGALLLVVAVMGVLAGHLRHHLLLQVW 525
            MQSMINYLLVFPVVGAIVMGYVQSLHRPMLEVLGLVDLHYVVGALLLVVAVMGVLAGHLRHHLLLQV+
Sbjct:    1 MQSMINYLLVFPVVGAIVMGYVQSLHRPMLEVLGLVDLHYVVGALLLVVAVMGVLAGHLRHHLLLQVY 68
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BLAST of mRNA_E-fasciculatus_F_contig16376.4318.1 vs. uniprot
Match: A0A7S2R9T0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R9T0_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.880e-11
Identity = 39/134 (29.10%), Postives = 67/134 (50.00%), Query Frame = 1 
Query:    1 KVWLDKHWDDPALANVRDRLCLNGTASD-QCAVPPAGFPHG------SPDLWCQAKYDSDECTAIKAEAVDKAMDFLSLFMNVAGGLSVSSVIEMLASLVLTVRVVTIPIIMRSMQSMINYLLVFPVVGAIVMG 381
            + W+   WD P +++VR   C   + SD +CAV P   P        + D WC+  +++ +C  I  EA D+   F    +      S   ++ +  SL L  R+VT+ II +SM  +INY ++ P +  +++G
Sbjct:  118 RSWIKHRWDTPEMSSVRRSFCKPRSVSDTKCAVYPPSLPFKYNITDYTVDEWCEDFWNATDCRLIYIEATDQVTVFAEQALTATATASAVEILLLFFSLYLAYRIVTMSIITKSMNELINYFMILPAIAILLVG 251
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BLAST of mRNA_E-fasciculatus_F_contig16376.4318.1 vs. uniprot
Match: A0A7S2R9V5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R9V5_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 8.130e-6
Identity = 34/119 (28.57%), Postives = 57/119 (47.90%), Query Frame = 1 
Query:   46 VRDRLCLNGTASD-QCAVPPAGFPHG------SPDLWCQAKYDSDECTAIKAEAVDKAMDFLSLFMNVAGGLSVSSVIEMLASLVLTVRVVTIPIIMRSMQSMINYLLVFPVVGAIVMG 381
             R   C   + SD +CAV P   P        + D WC+  +++ +C  I  EA D+   F    +      S   ++ +  SL L  R+VT+ II +SM  +INY ++ P +  +++G
Sbjct:    4 TRRSFCKPRSVSDTKCAVYPPSLPFKYNITDYTVDEWCEDFWNATDCRLIYIEATDQVTVFAEQALTATATASAVEILLLFFSLYLAYRIVTMSIITKSMNELINYFMILPAIAILLVG 122
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16376.4318.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G5S3_ECTSI2.830e-4098.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5S4_ECTSI1.540e-3298.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2R9T0_9STRA1.880e-1129.10Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2R9V5_9STRA8.130e-628.57Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16376contigE-fasciculatus_F_contig16376:89..2749 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.6
Seed ortholog evalue3.3e-12
Seed eggNOG ortholog35128.Thaps21053
EggNOG OGs2ENZU@1,2SSAB@2759,2XCWZ@2836
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size525
Cds size525
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16376.4318.1prot_E-fasciculatus_F_contig16376.4318.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16376 89..2749 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928106.4695468-CDS-E-fasciculatus_F_contig16376:88..2231622928106.4695468-CDS-E-fasciculatus_F_contig16376:88..223Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16376 89..223 -
1695995822.0245178-CDS-E-fasciculatus_F_contig16376:88..2231695995822.0245178-CDS-E-fasciculatus_F_contig16376:88..223Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16376 89..223 -
1622928106.4863517-CDS-E-fasciculatus_F_contig16376:722..7951622928106.4863517-CDS-E-fasciculatus_F_contig16376:722..795Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16376 723..795 -
1695995822.047269-CDS-E-fasciculatus_F_contig16376:722..7951695995822.047269-CDS-E-fasciculatus_F_contig16376:722..795Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16376 723..795 -
1622928106.503631-CDS-E-fasciculatus_F_contig16376:1631..17651622928106.503631-CDS-E-fasciculatus_F_contig16376:1631..1765Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16376 1632..1765 -
1695995822.061178-CDS-E-fasciculatus_F_contig16376:1631..17651695995822.061178-CDS-E-fasciculatus_F_contig16376:1631..1765Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16376 1632..1765 -
1622928106.5198658-CDS-E-fasciculatus_F_contig16376:2566..27491622928106.5198658-CDS-E-fasciculatus_F_contig16376:2566..2749Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16376 2567..2749 -
1695995822.0693762-CDS-E-fasciculatus_F_contig16376:2566..27491695995822.0693762-CDS-E-fasciculatus_F_contig16376:2566..2749Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16376 2567..2749 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16376.4318.1

>prot_E-fasciculatus_F_contig16376.4318.1 ID=prot_E-fasciculatus_F_contig16376.4318.1|Name=mRNA_E-fasciculatus_F_contig16376.4318.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=175bp
KVWLDKHWDDPALANVRDRLCLNGTASDQCAVPPAGFPHGSPDLWCQAKY
DSDECTAIKAEAVDKAMDFLSLFMNVAGGLSVSSVIEMLASLVLTVRVVT
IPIIMRSMQSMINYLLVFPVVGAIVMGYVQSLHRPMLEVLGLVDLHYVVG
ALLLVVAVMGVLAGHLRHHLLLQVW
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mRNA from alignment at E-fasciculatus_F_contig16376:89..2749-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16376.4318.1 ID=mRNA_E-fasciculatus_F_contig16376.4318.1|Name=mRNA_E-fasciculatus_F_contig16376.4318.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2661bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16376:89..2749- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGGTATGGCTAGACAAGCACTGGGACGACCCTGCGCTGGCAAACGTGCG
AGATCGGCTGTGCTTGAACGGGACCGCTAGCGATCAGTGTGCGGTGCCCC
CGGCGGGTTTTCCTCACGGCTCTCCGGACCTGTGGTGCCAGGCCAAGTAC
GACTCGGACGAGTGCACGGCGATAAAGGCAGAGGTAAGAGGTAGGCATGG
CTGTCTGTGGTGTGTCGAATCCACGGGGCCACCCCGGTGAGCGTTTTCCC
TCGTGTTTTCTGACTTTGGACGGTGCGTGGTACAAGCCACACGGTGGGGT
ATGTAGTGGGTGTGAAAACATGTAAGGTTTGAGAGAGAGTCAGTCACTCC
AAGGCCGCTGCCCAAACACCCTAAAGCTGATATTCTCCTAAACGGTGCTA
TGCAATAGCGTCTATGAACCTGCCTCTGACGATGCGGTGAGTCACCTTTT
AATTTTAATTATACTTGCGCGCTTGTTTGCGCGTGGCGCAATCCGACCCT
CTTCGCGTTGCACCATGACGAGGTTTACAGCTGAAACGGGTATCATCGTT
CAAGACCACGCCTATACATCGGTCTCAATGTTTGCTACGTAGCTGTGATA
ACGATCATCTTCTAGCCGTTACATGCGTTCTGATTACGGTTTCGTCCGCA
TGTGCTTTTTCAGCCCTTGAGGCCTTTAGTTCTACTATATTTTTAGGCTG
AAGCCTTCGCTCCACACCTTGCTGAAGAAGCGTGAGAGATAAATCAAAAA
GACAAAGTGCAGCAAAATGTGGACGGTTTCAATACCTCGCTCACGGCCAT
CATGTCGCTGGTTTGTTGTTTATTTTCATGTGTTAATTTTTTCTGGAACA
ATGCGTTGAATAGTCGCTCCGATGAAAGTCTGCAAACATTCACGGCCATG
ACTTTGCTCACCTTCGTGTCATTTTGTGAGTCTGTTGTTTCCGTTAACTT
GTTAAACCTACTCGCACCGCCGGGCCTCTTGCAGGCGGTAGACAAGGCGA
TGGACTTCCTGTCTCTTTTCATGAACGTGGCGGGGGGGCTGTCGGTGTCC
AGCGTGATAGAGATGTTGGCGTCTCTGGTGCTTACCGTGAGAGTGGTAAC
AATACCCATCATCATGAGGTGAAACATTATACTATTTTCTCAGCAGACGT
GCGTACCTGCGTCCGTTGGGGTTTGTCCTGTAGGGGCGTGGTGGTCAAAC
CAGGTATCCTGCGCCTTAGAAGGCTTGATTGAGGTGAGGGATACATACCC
GGGTCTGCGCGTTATTCTTTCATGAATGTGAAAGCAGTTTTTCTCAAATG
CCGAGACTGCTACTGCTGTGGGTTGAACTTGTTTGTTGCACCTGATTTTG
AGTCGTTGGTGCGTGAACCCGTTACCTTGCCCTGGAGAGCGTGGAAGGCG
ACGAGGGGGGGGGGTATACTAGTAGGCTAGAAAGATGCCAATAATAAGTT
TTATTGTCGAGGCAACTTCTCAGCCCCTTCACTTCAGGTACAGTATAGGT
CCGTCTCCAATATTTTTTGCCGTGTCGGTTCGTTCCCTCTCACGTAGGCA
GCGCCGCCCGCCGTAGCTGGCTTACCATAAAATGGAAATGACAACCAGGT
TGCACAATTCGCCTTTCGACATCGAAGCACCGGAATGGGTCGGTGAAGAG
ACACCGCGTTCGGGGTTTCCCCTTTTCTGCCATTTTTTTTATCTCACACG
CATTTTTTCTCTTTCGTGGAGTGAGTGAATTAACGCTGAACGAACAGGAG
GTGCAGCACCATCAACGACAGGATCACGAATACGCCCGATAGAGATGTTG
ATGTCCGACTCGGGAAGGAATAGACTTGGGCATCCGGGTTTGCAGAACAA
TGACCCTGATCAGGTGTGCTGTATTATCATTCTAGTCTGTCTCGGCGAGG
TGTCCTGACTAGTCACTACCACAACTCTGCTTGTTGATGTGCCCGGTTGC
CCAGATCAATGCAGAGCATGATCAACTACCTTCTCGTGTTTCCGGTGGTG
GGGGCCATCGTCATGGGATACGTCCAGGTGATGATGCGTCCGCCCTTCCT
ACCTCGTGTGGGATACAGTAATGGTATAATAGGCTATTGGCTTGTTTGGT
GTACAATAGTGGACGTCCGACCCCTGTGCACTACCCGCAGCCGTCGCATG
TGATGATATGCAGTTGCTGTAACGCGTGCGCCGTACTTACCCCCATAGCG
CGAGTGTTGTTTTTTGAATGAAGTCTTGACAGACAATGGTTAGCATTGCG
GTGTCTCGCACTTGAGGTTTTTTTACCCTTAGCCCTACGTCTCATTTGAC
GTGGTCTGTTCATCTTGTTTGTGTCAAGACGATGCAAGCTTCGACTGATC
ACACAAAGCTAGTACAGCAGTAAATCGACCGGCACTGCTCCAGACACAGG
CAACATAAACACCCCCCCACTGTAGTATCTTGCAGTAATGTTATGTATAT
ACGCCTACTTCCGTGCTTCGCGCCCTCGTCGCTCTCAACCCCACGTACTT
GGGTGTTACGTTTTTCTTGTGCGCAGTCTTTGCATCGACCGATGCTGGAG
GTCCTGGGTCTGGTGGACTTGCACTACGTTGTGGGGGCCCTGCTGCTGGT
AGTAGCGGTCATGGGGGTGTTGGCGGGGCACTTGCGTCATCACCTCTTGC
TGCAGGTGTGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16376:89..2749-

>mRNA_E-fasciculatus_F_contig16376.4318.1 ID=mRNA_E-fasciculatus_F_contig16376.4318.1|Name=mRNA_E-fasciculatus_F_contig16376.4318.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1050bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16376:89..2749- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGGTATGGCTAGACAAGCACTGGGACGACCCTGCGCTGGCAAACGTGCG
AGATCGGCTGTGCTTGAACGGGACCGCTAGCGATCAGTGTGCGGTGCCCC
CGGCGGGTTTTCCTCACGGCTCTCCGGACCTGTGGTGCCAGGCCAAGTAC
GACTCGGACGAGTGCACGGCGATAAAGGCAGAGAAGGTATGGCTAGACAA
GCACTGGGACGACCCTGCGCTGGCAAACGTGCGAGATCGGCTGTGCTTGA
ACGGGACCGCTAGCGATCAGTGTGCGGTGCCCCCGGCGGGTTTTCCTCAC
GGCTCTCCGGACCTGTGGTGCCAGGCCAAGTACGACTCGGACGAGTGCAC
GGCGATAAAGGCAGAGGCGGTAGACAAGGCGATGGACTTCCTGTCTCTTT
TCATGAACGTGGCGGGGGGGCTGTCGGTGTCCAGCGTGATAGAGATGTTG
GCGTCTCTGGTGCTTACCGTGAGAGTGGTAACAATACCCATCATCATGAG
GCGGTAGACAAGGCGATGGACTTCCTGTCTCTTTTCATGAACGTGGCGGG
GGGGCTGTCGGTGTCCAGCGTGATAGAGATGTTGGCGTCTCTGGTGCTTA
CCGTGAGAGTGGTAACAATACCCATCATCATGAGATCAATGCAGAGCATG
ATCAACTACCTTCTCGTGTTTCCGGTGGTGGGGGCCATCGTCATGGGATA
CGTCCAGATCAATGCAGAGCATGATCAACTACCTTCTCGTGTTTCCGGTG
GTGGGGGCCATCGTCATGGGATACGTCCAGTCTTTGCATCGACCGATGCT
GGAGGTCCTGGGTCTGGTGGACTTGCACTACGTTGTGGGGGCCCTGCTGC
TGGTAGTAGCGGTCATGGGGGTGTTGGCGGGGCACTTGCGTCATCACCTC
TTGCTGCAGGTGTGGTCTTTGCATCGACCGATGCTGGAGGTCCTGGGTCT
GGTGGACTTGCACTACGTTGTGGGGGCCCTGCTGCTGGTAGTAGCGGTCA
TGGGGGTGTTGGCGGGGCACTTGCGTCATCACCTCTTGCTGCAGGTGTGG
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