mRNA_E-fasciculatus_F_contig1637.4315.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1637.4315.1
Unique NamemRNA_E-fasciculatus_F_contig1637.4315.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1637.4315.1 vs. uniprot
Match: D7G5Z3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Z3_ECTSI)

HSP 1 Score: 173 bits (438), Expect = 4.330e-52
Identity = 90/114 (78.95%), Postives = 97/114 (85.09%), Query Frame = 1 
Query:   16 MLGSGRGSGPYLAGDDTPGRRSGHRQAPPFSVSFAGARDLEDEAPSPLPLPLTPFGLPVSAPLMSPRVVPTPLSMLLIVAADVGLHQVFGRLGWSLPSSVAGMVGLFAGLVGLD 357
            MLGSGRGSGPYL GDD PGR S HRQAPPFSVSFAGARDLED+ PSP PLP  P G PVSA L++PR V TPLSMLLIVAADVG+HQ+ GRLGWS PS+VAGMVGLFAG+  LD
Sbjct:    1 MLGSGRGSGPYLTGDDDPGRGSRHRQAPPFSVSFAGARDLEDKPPSPSPLPPAPLGTPVSALLVAPREVLTPLSMLLIVAADVGIHQIVGRLGWSFPSNVAGMVGLFAGVKLLD 114
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BLAST of mRNA_E-fasciculatus_F_contig1637.4315.1 vs. uniprot
Match: A0A6H5L6P9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6P9_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 6.440e-51
Identity = 88/110 (80.00%), Postives = 92/110 (83.64%), Query Frame = 1 
Query:   16 MLGSGRGSGPYLAGDDTPGRRSGHRQAPPFSVSFAGARDLEDEAPSPLPLPLTPFGLPVSAPLMSPRVVPTPLSMLLIVAADVGLHQVFGRLGWSLPSSVAGMVGLFAGL 345
            MLGSGRGSGPYL GDD PGR   HRQA PFSVSFAGARDLEDE PSP PLP  PFG PV A LM PR V TPLSMLL+VAADVGLHQ+FG+LGWS PS VAGMVGLFAG+
Sbjct:    1 MLGSGRGSGPYLTGDDAPGRGRAHRQASPFSVSFAGARDLEDEPPSPSPLPPAPFGTPVFALLMGPREVLTPLSMLLLVAADVGLHQLFGQLGWSFPSCVAGMVGLFAGV 110
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BLAST of mRNA_E-fasciculatus_F_contig1637.4315.1 vs. uniprot
Match: A0A6H5JFF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFF4_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 1.410e-41
Identity = 80/105 (76.19%), Postives = 84/105 (80.00%), Query Frame = 1 
Query:   31 RGSGPYLAGDDTPGRRSGHRQAPPFSVSFAGARDLEDEAPSPLPLPLTPFGLPVSAPLMSPRVVPTPLSMLLIVAADVGLHQVFGRLGWSLPSSVAGMVGLFAGL 345
            RGSGPYL G+D PGR S HRQAPPFSVSFA A DLEDE PSP PLP  PFG PVSA LM PR V T LSMLL+VAADVGL    GRLGWS PSSVAG+VGLFAG+
Sbjct:   95 RGSGPYLTGNDAPGRGSAHRQAPPFSVSFAEAGDLEDEPPSPSPLPPAPFGTPVSALLMGPREVLTTLSMLLLVAADVGLPHFSGRLGWSFPSSVAGVVGLFAGV 199
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1637.4315.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G5Z3_ECTSI4.330e-5278.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6P9_9PHAE6.440e-5180.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFF4_9PHAE1.410e-4176.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1637contigE-fasciculatus_F_contig1637:15509..16803 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.0
Seed ortholog evalue1.2e-11
Seed eggNOG ortholog2880.D8LU31
GOsGO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006810,GO:0006811,GO:0006820,GO:0006855,GO:0006996,GO:0008028,GO:0008150,GO:0008152,GO:0008509,GO:0008514,GO:0008643,GO:0009507,GO:0009526,GO:0009528,GO:0009536,GO:0009657,GO:0009658,GO:0009706,GO:0009853,GO:0009941,GO:0009987,GO:0015075,GO:0015144,GO:0015238,GO:0015318,GO:0015665,GO:0015711,GO:0015718,GO:0015849,GO:0015850,GO:0015893,GO:0016020,GO:0016043,GO:0019866,GO:0022857,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0034219,GO:0034220,GO:0042170,GO:0042221,GO:0042493,GO:0042873,GO:0042879,GO:0043094,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043879,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071840,GO:0097339,GO:0098656,GO:1900866,GO:1901618,GO:1901974,GO:1901975,GO:1903825,GO:1905039
EggNOG free text desc.LrgB-like family
EggNOG OGs2QQ63@2759,COG1346@1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_009460.2
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size648
Cds size633
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1637.4315.1prot_E-fasciculatus_F_contig1637.4315.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1637 15524..16803 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928106.2199836-UTR-E-fasciculatus_F_contig1637:15508..155231622928106.2199836-UTR-E-fasciculatus_F_contig1637:15508..15523Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1637 15509..15523 +
1695995821.9361105-UTR-E-fasciculatus_F_contig1637:15508..155231695995821.9361105-UTR-E-fasciculatus_F_contig1637:15508..15523Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1637 15509..15523 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928106.2348664-CDS-E-fasciculatus_F_contig1637:15523..158481622928106.2348664-CDS-E-fasciculatus_F_contig1637:15523..15848Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1637 15524..15848 +
1695995821.9462178-CDS-E-fasciculatus_F_contig1637:15523..158481695995821.9462178-CDS-E-fasciculatus_F_contig1637:15523..15848Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1637 15524..15848 +
1622928106.2502115-CDS-E-fasciculatus_F_contig1637:16495..168031622928106.2502115-CDS-E-fasciculatus_F_contig1637:16495..16803Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1637 16496..16803 +
1695995821.957099-CDS-E-fasciculatus_F_contig1637:16495..168031695995821.957099-CDS-E-fasciculatus_F_contig1637:16495..16803Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1637 16496..16803 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1637.4315.1

>prot_E-fasciculatus_F_contig1637.4315.1 ID=prot_E-fasciculatus_F_contig1637.4315.1|Name=mRNA_E-fasciculatus_F_contig1637.4315.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=211bp
MLGSGRGSGPYLAGDDTPGRRSGHRQAPPFSVSFAGARDLEDEAPSPLPL
PLTPFGLPVSAPLMSPRVVPTPLSMLLIVAADVGLHQVFGRLGWSLPSSV
AGMVGLFAGLVGLDRIAPSYADRVVRVLEPASAEFSRWLPVVLVPSLAPW
SYFPLGSLPGSSASLAQVVVTAAKTAARHAAGRGSEDYAFSRFTVGRRPS
GSRLRAVASVA
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mRNA from alignment at E-fasciculatus_F_contig1637:15509..16803+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1637.4315.1 ID=mRNA_E-fasciculatus_F_contig1637.4315.1|Name=mRNA_E-fasciculatus_F_contig1637.4315.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1295bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1637:15509..16803+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGTGGCCGCCACGCATGCTGGGATCAGGGCGCGGCAGTGGACCGTATCT
TGCTGGTGATGACACCCCGGGACGTCGAAGTGGGCACCGCCAGGCACCAC
CATTCTCTGTCTCGTTTGCTGGAGCGAGAGATTTGGAGGACGAAGCTCCC
TCCCCGTTACCACTACCGCTGACGCCGTTCGGTCTGCCCGTCTCTGCCCC
TCTGATGAGCCCCAGAGTGGTTCCGACGCCATTGTCGATGCTGTTGATCG
TTGCCGCGGATGTTGGGCTCCACCAGGTTTTCGGTCGGCTTGGGTGGTCG
TTGCCTTCTAGCGTCGCTGGCATGGTGGGGCTGTTTGCAGGTGTGAAGTT
TTGGGACGCTACGAGGGGGGGGGGGCGTAGAGAGACGAAAATAGTGGAGT
GAGAATATGGTGCGGATTTCAAGACACCGCCGGGGAACGGATGGAACTGC
TGGATATCAGGTCGAACCCCCGGGTATCACACGCACCGTTGTGGACGAAG
TGGATGCGATGGTCATGTGCAGATATGTCCCATAAGACTGCAAGATTCAA
AGAACCATATTTTTTATCTAAGTGACAGTATACCACGCACGTCCACCCTT
CCTGTCTTGCAATAGAATCCCGTGGCGGATTTCGGGGTTATGCCAACGAA
CAATGGTGTTCTACATCAAGAATTGATCGACTCGGAACCGAAGTCGGGTG
CGCCCATACGGGTGCTATCGAGGATCGGTCCAATGTAACGAAGACTGTTG
TGATGACGTTCTGCAGGTTTCTCTGCAGGTTTCTCTTGTAGGGAATACTG
TATCGCAACAGCAGTGCCATAGCTCTACATATCACGTTCGGCTGATATCA
AACACCCCGACAGGAGGGACAACAGGTGGGAAGCCCGTTCTTTTTTCGGC
TCGTTGCATCCAATCGAGTATTTCGCAAAATGCGCTTTTGCCCACCTCAC
CGTAACACGATGCCGCTTCAATGTCGTTTCGACCCAGGGCTTGTTGGTCT
CGACCGCATAGCTCCTTCGTACGCCGACAGGGTGGTTCGCGTGCTAGAAC
CAGCATCTGCGGAGTTCTCGAGATGGCTACCCGTGGTCTTGGTCCCTTCT
CTCGCCCCGTGGAGTTATTTCCCGCTGGGGAGCTTACCGGGGTCATCAGC
GTCTCTAGCCCAAGTGGTGGTGACGGCAGCAAAGACTGCGGCGAGACATG
CGGCTGGGCGAGGTTCGGAAGACTATGCTTTTTCGCGATTTACGGTGGGG
CGGAGGCCGAGCGGGTCGAGGCTCCGAGCGGTCGCGAGTGTCGCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1637:15509..16803+

>mRNA_E-fasciculatus_F_contig1637.4315.1 ID=mRNA_E-fasciculatus_F_contig1637.4315.1|Name=mRNA_E-fasciculatus_F_contig1637.4315.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1266bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1637:15509..16803+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTGGGATCAGGGCGCGGCAGTGGACCGTATCTTGCTGGTGATGACAC
CCCGGGACGTCGAAGTGGGCACCGCCAGGCACCACCATTCTCTGTCTCGT
TTGCTGGAGCGAGAGATTTGGAGGACGAAGCTCCCTCCCCGTTACCACTA
CCGCTGACGCCGTTCGGTCTGCCCGTCTCTGCCCCTCTGATGAGCCCCAG
AGTGGTTCCGACGCCATTGTCGATGCTGTTGATCGTTGCCGCGGATGTTG
GGCTCCACCAGGTTTTCGGTCGGCTTGGGTGGTCGTTGCCTTCTAGCGTC
GCTGGCATGGTGGGGCTGTTTGCAGATGCTGGGATCAGGGCGCGGCAGTG
GACCGTATCTTGCTGGTGATGACACCCCGGGACGTCGAAGTGGGCACCGC
CAGGCACCACCATTCTCTGTCTCGTTTGCTGGAGCGAGAGATTTGGAGGA
CGAAGCTCCCTCCCCGTTACCACTACCGCTGACGCCGTTCGGTCTGCCCG
TCTCTGCCCCTCTGATGAGCCCCAGAGTGGTTCCGACGCCATTGTCGATG
CTGTTGATCGTTGCCGCGGATGTTGGGCTCCACCAGGTTTTCGGTCGGCT
TGGGTGGTCGTTGCCTTCTAGCGTCGCTGGCATGGTGGGGCTGTTTGCAG
GGCTTGTTGGTCTCGACCGCATAGCTCCTTCGTACGCCGACAGGGTGGTT
CGCGTGCTAGAACCAGCATCTGCGGAGTTCTCGAGATGGCTACCCGTGGT
CTTGGTCCCTTCTCTCGCCCCGTGGAGTTATTTCCCGCTGGGGAGCTTAC
CGGGGTCATCAGCGTCTCTAGCCCAAGTGGTGGTGACGGCAGCAAAGACT
GCGGCGAGACATGCGGCTGGGCGAGGTTCGGAAGACTATGCTTTTTCGCG
ATTTACGGTGGGGCGGAGGCCGAGCGGGTCGAGGCTCCGAGCGGTCGCGA
GTGTCGCCGGCTTGTTGGTCTCGACCGCATAGCTCCTTCGTACGCCGACA
GGGTGGTTCGCGTGCTAGAACCAGCATCTGCGGAGTTCTCGAGATGGCTA
CCCGTGGTCTTGGTCCCTTCTCTCGCCCCGTGGAGTTATTTCCCGCTGGG
GAGCTTACCGGGGTCATCAGCGTCTCTAGCCCAAGTGGTGGTGACGGCAG
CAAAGACTGCGGCGAGACATGCGGCTGGGCGAGGTTCGGAAGACTATGCT
TTTTCGCGATTTACGGTGGGGCGGAGGCCGAGCGGGTCGAGGCTCCGAGC
GGTCGCGAGTGTCGCC
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