mRNA_E-fasciculatus_F_contig1637.4313.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1637.4313.1
Unique NamemRNA_E-fasciculatus_F_contig1637.4313.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1637.4313.1 vs. uniprot
Match: A0A6H5LAH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAH5_9PHAE)

HSP 1 Score: 204 bits (519), Expect = 2.080e-57
Identity = 126/190 (66.32%), Postives = 146/190 (76.84%), Query Frame = 1 
Query:   43 RGEGGKGTLSLLPCGPGPSPRHKESPGRRELP---AHCSMGARRRSREGVAVRAVAAAGILALCSASIVTGTGSTSVRAQEDISFPPWRAGGADGHRPREWGQGGGGVREELFAQQAFLERQGEEEHRRREHAPWAGEEY----GAGSDREEAAQV--------ATSRPPSNRVARGEGTGREEDFRRQQ 567
            +GEGGKGT SLLP GPGP PR+KESPGR+      ++ +MGAR R REGV +RA+AA GILALCSASIVTGTG+TSVRA+ED SFPPWR G +DGHRPREWG+GG  V+EELFA+QAFL  Q  EE RRR+HAPWAGEE     GA SDR+EAA+V        A +RPP+   A GEGTGREE+FR QQ
Sbjct:   32 KGEGGKGTSSLLPRGPGPFPRNKESPGRKRASGAKSYRNMGARWRCREGVTIRAIAA-GILALCSASIVTGTGTTSVRAREDASFPPWRGGPSDGHRPREWGKGGD-VQEELFAKQAFLGPQDGEEPRRRKHAPWAGEEEEEEDGARSDRDEAARVEPWRGETAAANRPPNR--AWGEGTGREEEFRGQQ 217
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1637.4313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LAH5_9PHAE2.080e-5766.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1637contigE-fasciculatus_F_contig1637:665..3709 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size573
Cds size570
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928105.842755-CDS-E-fasciculatus_F_contig1637:666..11041622928105.842755-CDS-E-fasciculatus_F_contig1637:666..1104Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1637 667..1104 -
1695995821.794115-CDS-E-fasciculatus_F_contig1637:666..11041695995821.794115-CDS-E-fasciculatus_F_contig1637:666..1104Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1637 667..1104 -
1622928105.8775508-CDS-E-fasciculatus_F_contig1637:3577..37091622928105.8775508-CDS-E-fasciculatus_F_contig1637:3577..3709Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1637 3578..3709 -
1695995821.8038344-CDS-E-fasciculatus_F_contig1637:3577..37091695995821.8038344-CDS-E-fasciculatus_F_contig1637:3577..3709Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1637 3578..3709 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1637.4313.1prot_E-fasciculatus_F_contig1637.4313.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1637 667..3709 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1637.4313.1

>prot_E-fasciculatus_F_contig1637.4313.1 ID=prot_E-fasciculatus_F_contig1637.4313.1|Name=mRNA_E-fasciculatus_F_contig1637.4313.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=190bp
LDPEKHGPKAGGESRGEGGKGTLSLLPCGPGPSPRHKESPGRRELPAHCS
MGARRRSREGVAVRAVAAAGILALCSASIVTGTGSTSVRAQEDISFPPWR
AGGADGHRPREWGQGGGGVREELFAQQAFLERQGEEEHRRREHAPWAGEE
YGAGSDREEAAQVATSRPPSNRVARGEGTGREEDFRRQQQ
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mRNA from alignment at E-fasciculatus_F_contig1637:665..3709-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1637.4313.1 ID=mRNA_E-fasciculatus_F_contig1637.4313.1|Name=mRNA_E-fasciculatus_F_contig1637.4313.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3045bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1637:665..3709- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTAGATCCAGAGAAGCACGGGCCGAAGGCCGGAGGGGAGAGCAGGGGAGA
AGGAGGGAAGGGCACATTGTCACTTCTTCCGTGCGGCCCTGGCCCATCTC
CCCGACACAAGGAATCACCAGGGCGAAGGGAGGTGAGAGGCGATGGTTAT
TTTCATTTTCAGTTCAGCCAGCCCACCTCTGAACGCGGCTTATCTCCATT
TCTCAACAGTCTCGCGCCCCTGATGGCCGATGGCCGAGCATTCGGCGCGG
TGGGCTTCTGGAGAGAGAGAGTGTGTGTGCGTGACAGACAAGTGTGTGGG
CAGCACCCCACCTACACGCCCACACACACACACACACGCACACAGCTGGG
TCGGTGCTGCTACAGTCTTCAGCGCCGTCAGTGCCAACGCCCGTGAGGGA
GGGCACACAAAACACAAGGGAAGGACAACAACCATGGCGGGAAAGCGGAC
TTTTGAAAACAACTTTCAGCCGCTCTCTCCCGTCACAGGAGACCTCCGCG
TGAGACCGGTCATGCGATCGCGAAAGCGAGAGGAATGTACTCGGTTTTGA
GAAGGAAAAGCAGAGACTCTGGCGTCACAACACGATCGCGTTGTGTGTCG
TTCTCCGAATGTCCCTTGTCTTCTTTCGGGTCTTTTGTTTCCCAGTGGTC
TCTTTAGCGCCATGTGAAGAATATTGGAATCATTTTTTTTGTTGCCGTCT
TCAGTCTTGAGGCGGGCGAACCGTTCTCCAGCTCACCTCCATCGTCTCGT
GCGTGATGTCAAAAGTCAAAAGTCTTGATCACAACGGAGTAGAAGTGAAG
CAGTTTCGAGACACGGGGGGGAGACTATGTTTCGACAAATGTGCAGACGG
TCAATGAAGGTCGGGGCGGTGAAGCTTCCCCAAGTACTGCTGTTGCTGTG
TGGAAGTGTGGAAGCGCACATCTTTACCCCGTCTTCGCTCGGTCATGACT
CCCCCGCCCAAGGACGTTACTGATAACGCAAGCGACAAGTCCATGCTAGA
CCGATACTACGGTTACTTTTGGAAACGAGAGGAACACCCGTGGATGCCTC
TCCGAGTGTTCTTTTTTAAGAGTGCGTTTCCGTCTAACAGGGAAAGCCGC
TGGTTTTCTGTATGCATACGACTCCTGTACAACCGCACATAAGCCTCCGT
TCGAACAGCAGCAGCTGTGGAGTGCGAGGACACGGGCGCTCTCAGATTGG
AAAGCCGTTGGGGGATGCCAAACGGCTGTTGTTCTCGTGCGCTACCGCAG
AGCAATTTCGTTGTTGTTTACTGGAGTTTGGTCGCTTGTTTGGCAAATAA
ATGTCAAGCAGCGCGTGCGACAGAAATTTACCGGAAAAATAAATACCCCG
ATGCTTGCAGTACGTGACTCAAGACACCACAACCCCCTGGGCCAACGCTC
GATTTACTCAACGACGAAGAGGATGCCACAATCAAACGACAGTTTTCGGA
AGCTCTCGATGAGAGGCTCCAAACGCCGCCGTGTTCGGCACCGCCACGCT
TTCTACAGCAGTGGAGAAATTGATCTGTGAAAATCCGTCAGGGGTTGTGG
TAACTAATGTCAGTACGTTGTAATACGGAGTTGACCTCGTGATTCGACAA
GAACGTAGGAAGAATGCACATGATGTTATAGAACCGAATCATCTTTCAGG
GTTAGCGTGAGACGACTGGTATTGGCACCGCGTGGGATCGTGTTTCACAC
CAATTTTCTTGCCCATTGTTAGAAATATAATAAAACATGGTGGTAACGAA
CGACATCAAGGATACCCTCAAACCATGGTTGTACCCCGTTTGAACTTCTG
TAGTGGTTGCCACTGGTGAGGATTCGCGGGGCACAGGTCCTCGTGGACAG
ATAATGCCTCGTCGAGGTTGGTCCTGAGTAAACGAAGAGCGGTGGTGTGT
TTATCCAACAGTCTGAAATCTCGGAGGTGATGAAACTATCAGCTGAGAGA
GGGCTGGCTTCCCAAAGAACAACTAAAATATAATCCTCGCGCCATCGACG
CCTCCAGCGGGGGTCACACATCACTCAGAGAACCGAATACTTATTTTCCC
TTCGTTTGCTTTTCGATGGCACCTTGGTTGCATTGCCCCCGAGGCGTGTG
ATATTGAATCAATAAACAGCGCAATTCACCCCGGGTGCGAATCAGTTGTA
CTTCCGATCGTTCGGTGCGCTATTCACGTCAACAGCATCTTTCTGCAGCG
CATCTTTCTGCAGCGAACAATAACAATACTTCTGAATTGATGTGTGTTTT
GTAGTGCGATTTCCTTGAAGTTTCTCCTCGTACCTCTCTTTTGCCTGATG
TGCGGAATCGTGTTCCTTAGTAAAGATTTTCCGGAATTCCGCGTCATTTT
TTGTTCGTTGGTCTGACGGCTACACGGCGCACGATACTAAACAGGGAGTG
CATTTTATTCTCAAGACGATACCTTCTTGGAGAGAAGACGCGCCGCAGAG
CTCGTGTGCTTTTGGTCCGTATGAATATCCTCCACTCGCATGCTACGACA
GTTACCAGTACCATCCCCGTGCACAGAAAAGCTAGCCATTACATGCACGA
CTCTTGACCAGTGTCTCCGCCCCCCCCCCACACCTCCACACCCCTCTACC
AACAGCTTCCAGCACACTGCAGCATGGGGGCCCGGCGGCGATCCCGGGAG
GGGGTGGCCGTTCGTGCAGTAGCGGCCGCCGGTATTCTGGCCCTATGCTC
TGCATCAATAGTCACCGGCACCGGCAGCACCTCTGTCCGAGCGCAAGAGG
ATATTTCTTTCCCGCCATGGAGAGCGGGGGGCGCCGATGGGCACCGCCCA
CGAGAGTGGGGGCAGGGGGGCGGGGGCGTACGGGAGGAGCTGTTCGCACA
GCAGGCGTTTTTGGAACGGCAGGGCGAGGAGGAACACCGGCGAAGAGAGC
ACGCCCCGTGGGCGGGAGAGGAGTACGGGGCGGGATCGGACCGAGAAGAA
GCGGCGCAGGTAGCAACAAGTAGACCACCCAGCAACCGCGTGGCGCGGGG
CGAGGGAACGGGAAGGGAAGAAGACTTTCGCAGGCAGCAGCAGCA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1637:665..3709-

>mRNA_E-fasciculatus_F_contig1637.4313.1 ID=mRNA_E-fasciculatus_F_contig1637.4313.1|Name=mRNA_E-fasciculatus_F_contig1637.4313.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1140bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1637:665..3709- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTAGATCCAGAGAAGCACGGGCCGAAGGCCGGAGGGGAGAGCAGGGGAGA
AGGAGGGAAGGGCACATTGTCACTTCTTCCGTGCGGCCCTGGCCCATCTC
CCCGACACAAGGAATCACCAGGGCGAAGGGAGCTAGATCCAGAGAAGCAC
GGGCCGAAGGCCGGAGGGGAGAGCAGGGGAGAAGGAGGGAAGGGCACATT
GTCACTTCTTCCGTGCGGCCCTGGCCCATCTCCCCGACACAAGGAATCAC
CAGGGCGAAGGGAGCTTCCAGCACACTGCAGCATGGGGGCCCGGCGGCGA
TCCCGGGAGGGGGTGGCCGTTCGTGCAGTAGCGGCCGCCGGTATTCTGGC
CCTATGCTCTGCATCAATAGTCACCGGCACCGGCAGCACCTCTGTCCGAG
CGCAAGAGGATATTTCTTTCCCGCCATGGAGAGCGGGGGGCGCCGATGGG
CACCGCCCACGAGAGTGGGGGCAGGGGGGCGGGGGCGTACGGGAGGAGCT
GTTCGCACAGCAGGCGTTTTTGGAACGGCAGGGCGAGGAGGAACACCGGC
GAAGAGAGCACGCCCCGTGGGCGGGAGAGGAGTACGGGGCGGGATCGGAC
CGAGAAGAAGCGGCGCAGGTAGCAACAAGTAGACCACCCAGCAACCGCGT
GGCGCGGGGCGAGGGAACGGGAAGGGAAGAAGACTTTCGCAGGCAGCAGC
AGCTTCCAGCACACTGCAGCATGGGGGCCCGGCGGCGATCCCGGGAGGGG
GTGGCCGTTCGTGCAGTAGCGGCCGCCGGTATTCTGGCCCTATGCTCTGC
ATCAATAGTCACCGGCACCGGCAGCACCTCTGTCCGAGCGCAAGAGGATA
TTTCTTTCCCGCCATGGAGAGCGGGGGGCGCCGATGGGCACCGCCCACGA
GAGTGGGGGCAGGGGGGCGGGGGCGTACGGGAGGAGCTGTTCGCACAGCA
GGCGTTTTTGGAACGGCAGGGCGAGGAGGAACACCGGCGAAGAGAGCACG
CCCCGTGGGCGGGAGAGGAGTACGGGGCGGGATCGGACCGAGAAGAAGCG
GCGCAGGTAGCAACAAGTAGACCACCCAGCAACCGCGTGGCGCGGGGCGA
GGGAACGGGAAGGGAAGAAGACTTTCGCAGGCAGCAGCAG
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