mRNA_E-fasciculatus_F_contig16367.4312.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16367.4312.1
Unique NamemRNA_E-fasciculatus_F_contig16367.4312.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16367.4312.1 vs. uniprot
Match: D7FI85_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI85_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 2.130e-19
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:    1 MSKRYVLVKSDGDGPKPCAFYASAAGCRTGVSCKFLHGDQPTAG 132
            M+ RYVLV+SDGDGPKPCAFYASAAGCR   SCKFLHGDQPTAG
Sbjct:    1 MANRYVLVRSDGDGPKPCAFYASAAGCRNAASCKFLHGDQPTAG 44
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BLAST of mRNA_E-fasciculatus_F_contig16367.4312.1 vs. uniprot
Match: A0A7S3HFH7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HFH7_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 2.780e-8
Identity = 27/39 (69.23%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    7 KRYVLV-KSDG--DGPKPCAFYASAAGCRTGVSCKFLHG 114
            KRY+L  K DG  D  KPCAF+ASAAGCR G  CKFLHG
Sbjct:    8 KRYILFSKEDGRPDSEKPCAFFASAAGCRNGAKCKFLHG 46
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16367.4312.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FI85_ECTSI2.130e-1986.36Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3HFH7_9STRA2.780e-869.23Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16367contigE-fasciculatus_F_contig16367:251..382 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.8
Seed ortholog evalue1.4e-15
Seed eggNOG ortholog2880.D7FI85
KEGG koko:K14570
KEGG Pathwayko03008,map03008
EggNOG free text desc.exonuclease activity
EggNOG OGsCOG0847@1,KOG2248@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size132
Cds size132
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928105.7604904-CDS-E-fasciculatus_F_contig16367:250..3821622928105.7604904-CDS-E-fasciculatus_F_contig16367:250..382Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16367 251..382 -
1695995821.7824385-CDS-E-fasciculatus_F_contig16367:250..3821695995821.7824385-CDS-E-fasciculatus_F_contig16367:250..382Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16367 251..382 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16367.4312.1prot_E-fasciculatus_F_contig16367.4312.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16367 251..382 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16367.4312.1

>prot_E-fasciculatus_F_contig16367.4312.1 ID=prot_E-fasciculatus_F_contig16367.4312.1|Name=mRNA_E-fasciculatus_F_contig16367.4312.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=44bp
MSKRYVLVKSDGDGPKPCAFYASAAGCRTGVSCKFLHGDQPTAG
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mRNA from alignment at E-fasciculatus_F_contig16367:251..382-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16367.4312.1 ID=mRNA_E-fasciculatus_F_contig16367.4312.1|Name=mRNA_E-fasciculatus_F_contig16367.4312.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=132bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16367:251..382- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCGAAGCGATACGTGCTTGTCAAGTCAGACGGCGATGGGCCGAAACC
GTGCGCCTTCTACGCCTCTGCGGCGGGATGCAGGACTGGGGTGAGCTGCA
AGTTTTTGCATGGCGACCAGCCGACTGCTGGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16367:251..382-

>mRNA_E-fasciculatus_F_contig16367.4312.1 ID=mRNA_E-fasciculatus_F_contig16367.4312.1|Name=mRNA_E-fasciculatus_F_contig16367.4312.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=264bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16367:251..382- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCGAAGCGATACGTGCTTGTCAAGTCAGACGGCGATGGGCCGAAACC
GTGCGCCTTCTACGCCTCTGCGGCGGGATGCAGGACTGGGGTGAGCTGCA
AGTTTTTGCATGGCGACCAGCCGACTGCTGGCATGTCGAAGCGATACGTG
CTTGTCAAGTCAGACGGCGATGGGCCGAAACCGTGCGCCTTCTACGCCTC
TGCGGCGGGATGCAGGACTGGGGTGAGCTGCAAGTTTTTGCATGGCGACC
AGCCGACTGCTGGC
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