mRNA_E-fasciculatus_F_contig16362.4310.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16362.4310.1
Unique NamemRNA_E-fasciculatus_F_contig16362.4310.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16362.4310.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16362contigE-fasciculatus_F_contig16362:1297..2775 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1479
Cds size750
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16362.4310.1prot_E-fasciculatus_F_contig16362.4310.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16362 1629..2378 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928105.4465332-UTR-E-fasciculatus_F_contig16362:1296..16281622928105.4465332-UTR-E-fasciculatus_F_contig16362:1296..1628Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16362 1297..1628 +
1695995821.699692-UTR-E-fasciculatus_F_contig16362:1296..16281695995821.699692-UTR-E-fasciculatus_F_contig16362:1296..1628Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16362 1297..1628 +
1622928105.5250924-UTR-E-fasciculatus_F_contig16362:2378..27751622928105.5250924-UTR-E-fasciculatus_F_contig16362:2378..2775Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16362 2379..2775 +
1695995821.7185133-UTR-E-fasciculatus_F_contig16362:2378..27751695995821.7185133-UTR-E-fasciculatus_F_contig16362:2378..2775Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16362 2379..2775 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928105.4970489-CDS-E-fasciculatus_F_contig16362:1628..23781622928105.4970489-CDS-E-fasciculatus_F_contig16362:1628..2378Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16362 1629..2378 +
1695995821.7102358-CDS-E-fasciculatus_F_contig16362:1628..23781695995821.7102358-CDS-E-fasciculatus_F_contig16362:1628..2378Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16362 1629..2378 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16362.4310.1

>prot_E-fasciculatus_F_contig16362.4310.1 ID=prot_E-fasciculatus_F_contig16362.4310.1|Name=mRNA_E-fasciculatus_F_contig16362.4310.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=250bp
MATFDRVTHDGVAAFHRRQGGLYLYCTSTKRWACCDFHPFFHHTYIRCSR
THFFLYPLNTHEKVSSCKQNIRHHTCTLSSENGRGQNVKHVAARCLRILV
HLQPSSTIQNRLLYAWCGSRSTCQEASQSHPNQPTLYAYTTGKGKPPKHS
STPTFQTGGKNSRALLSFATLHLPAHYAHYTSSYSPQHEERRQGVTTHKT
SINLWFVAIIRRWCSNDQHRQSRVSNTTNLKPTIHVSGKSPSAVYTPQR*
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mRNA from alignment at E-fasciculatus_F_contig16362:1297..2775+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16362.4310.1 ID=mRNA_E-fasciculatus_F_contig16362.4310.1|Name=mRNA_E-fasciculatus_F_contig16362.4310.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1479bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16362:1297..2775+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGTGAGACAGGGAACTCGTTTGTTTGCATTCAATCGAAAGCATGCAGCCG
AAGCTGCTTCCCTGCACGTCGCCATTGCCGCTCTCGAGCGACTCTTTCTA
TGCATACATACAATACTTAACATTCGCACCTATGCATACGTAAGTTATAT
CCTCTCACGCAGGACATACACTTGGCAAGTCGGACACTCGCTCGTTCTCC
TTCCCTTCACATCAGCGCGACTGAACCCAATATTACCTGTCATATCTCCC
TCCCAGACTCAGACCCTACAGTACCCCTAAACCACCGCCTTGCGCGGGAC
TAGTCTATGGTACAATTCCTGGAGTACAGCCAATGGCCACCTTCGACCGC
GTAACACACGACGGTGTCGCTGCGTTCCACCGAAGGCAAGGGGGGCTTTA
TCTCTACTGTACCTCTACGAAAAGATGGGCCTGCTGTGATTTTCATCCAT
TTTTTCATCACACATACATACGGTGCTCCCGCACACACTTCTTCCTGTAC
CCGCTAAATACCCACGAGAAGGTCTCATCATGTAAACAAAATATCCGCCA
CCACACGTGCACCCTTTCTTCAGAAAATGGCCGTGGCCAAAATGTCAAGC
ACGTTGCCGCGCGCTGCTTACGTATTTTAGTACACCTACAACCCAGCTCC
ACCATCCAAAATAGACTATTATATGCCTGGTGCGGAAGCCGATCAACCTG
CCAAGAAGCATCCCAATCCCATCCCAACCAGCCTACACTGTACGCTTATA
CCACGGGAAAAGGAAAACCCCCAAAACATTCCTCCACTCCAACATTCCAA
ACTGGGGGCAAGAATTCGCGGGCTTTGTTGTCCTTCGCAACTCTACACCT
ACCCGCGCATTACGCACACTACACATCGAGTTATTCTCCTCAACATGAGG
AGAGAAGACAAGGAGTGACCACACACAAGACGTCTATCAACCTGTGGTTC
GTTGCTATTATCCGGAGGTGGTGCAGCAACGACCAGCACAGGCAGTCACG
CGTTTCAAACACAACCAACCTTAAACCAACCATTCATGTTTCCGGAAAAT
CACCTTCTGCAGTCTACACGCCTCAACGTTGAACACATGTTTATTTGACA
TAAAACTCTGACGTACACCACACGAAGCACTGGAAACAAAAAGTCGAAGC
ACTTCGTATCTCCACATGACTTTGGTTTACACACGACTGGCACTGAGTGC
CATATTTCACGTTGTCACAAAATAAAAACTGGAATGCGATGATGCCACCT
GATTTTCTTGTACCAACCACCCACGAGACCACGAGAGAGAGGAATCTTAC
CGGGGAAGAAAAACAACGAACTCGGACCTATTACATGCAATTGTAGCACT
CTGAGGACCCTCGATCGATCGAGCCGGGGGATAGAGCGTGTCCGGTGTCC
GGTGCCTAAACTCGGAAACCACGCGGGAGCCTCAGATGGCAGTGATACAT
CTACACCGACCGGCAGCGTTTGCGCATAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16362:1297..2775+

>mRNA_E-fasciculatus_F_contig16362.4310.1 ID=mRNA_E-fasciculatus_F_contig16362.4310.1|Name=mRNA_E-fasciculatus_F_contig16362.4310.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1500bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16362:1297..2775+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCCACCTTCGACCGCGTAACACACGACGGTGTCGCTGCGTTCCACCG
AAGGCAAGGGGGGCTTTATCTCTACTGTACCTCTACGAAAAGATGGGCCT
GCTGTGATTTTCATCCATTTTTTCATCACACATACATACGGTGCTCCCGC
ACACACTTCTTCCTGTACCCGCTAAATACCCACGAGAAGGTCTCATCATG
TAAACAAAATATCCGCCACCACACGTGCACCCTTTCTTCAGAAAATGGCC
GTGGCCAAAATGTCAAGCACGTTGCCGCGCGCTGCTTACGTATTTTAGTA
CACCTACAACCCAGCTCCACCATCCAAAATAGACTATTATATGCCTGGTG
CGGAAGCCGATCAACCTGCCAAGAAGCATCCCAATCCCATCCCAACCAGC
CTACACTGTACGCTTATACCACGGGAAAAGGAAAACCCCCAAAACATTCC
TCCACTCCAACATTCCAAACTGGGGGCAAGAATTCGCGGGCTTTGTTGTC
CTTCGCAACTCTACACCTACCCGCGCATTACGCACACTACACATCGAGTT
ATTCTCCTCAACATGAGGAGAGAAGACAAGGAGTGACCACACACAAGACG
TCTATCAACCTGTGGTTCGTTGCTATTATCCGGAGGTGGTGCAGCAACGA
CCAGCACAGGCAGTCACGCGTTTCAAACACAACCAACCTTAAACCAACCA
TTCATGTTTCCGGAAAATCACCTTCTGCAGTCTACACGCCTCAACGTTGA
ATGGCCACCTTCGACCGCGTAACACACGACGGTGTCGCTGCGTTCCACCG
AAGGCAAGGGGGGCTTTATCTCTACTGTACCTCTACGAAAAGATGGGCCT
GCTGTGATTTTCATCCATTTTTTCATCACACATACATACGGTGCTCCCGC
ACACACTTCTTCCTGTACCCGCTAAATACCCACGAGAAGGTCTCATCATG
TAAACAAAATATCCGCCACCACACGTGCACCCTTTCTTCAGAAAATGGCC
GTGGCCAAAATGTCAAGCACGTTGCCGCGCGCTGCTTACGTATTTTAGTA
CACCTACAACCCAGCTCCACCATCCAAAATAGACTATTATATGCCTGGTG
CGGAAGCCGATCAACCTGCCAAGAAGCATCCCAATCCCATCCCAACCAGC
CTACACTGTACGCTTATACCACGGGAAAAGGAAAACCCCCAAAACATTCC
TCCACTCCAACATTCCAAACTGGGGGCAAGAATTCGCGGGCTTTGTTGTC
CTTCGCAACTCTACACCTACCCGCGCATTACGCACACTACACATCGAGTT
ATTCTCCTCAACATGAGGAGAGAAGACAAGGAGTGACCACACACAAGACG
TCTATCAACCTGTGGTTCGTTGCTATTATCCGGAGGTGGTGCAGCAACGA
CCAGCACAGGCAGTCACGCGTTTCAAACACAACCAACCTTAAACCAACCA
TTCATGTTTCCGGAAAATCACCTTCTGCAGTCTACACGCCTCAACGTTGA
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