mRNA_E-fasciculatus_F_contig16361.4309.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16361.4309.1
Unique NamemRNA_E-fasciculatus_F_contig16361.4309.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16361.4309.1 vs. uniprot
Match: D7FST9_ECTSI (Sulfotransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FST9_ECTSI)

HSP 1 Score: 224 bits (570), Expect = 1.340e-65
Identity = 139/201 (69.15%), Postives = 154/201 (76.62%), Query Frame = 1 
Query:  301 TARARGSAGGSNGLSRGSSVARRADSQGDGRGRRRDGGAGDRGDGSQRGGASRVGKGGERGVVNGGGRAMAATPTFDLLRVRRRND----LESEYPQLKFLDGEE----KSGASAWGPFSLRRYESFEAYAAEQSASGNATVPVPIVRRRGKGPEDSRSIPLAIIIGAQARGTQNLRSHLLTHPLLSGLRRKEVHFFDRYW 879
            TA ARG  GGS+GLSR S   RRA+SQGD RGRR +GGAGD GDG  RGGA+R  K G+R  VNGGGRAMAA PTF +LRVR+R+     L S  P+L+FL G+     +S  SA GPFSLRRYESFEAYA EQSASGNA +PVPIVR  GKGPE SRSIPLAIIIG Q  GTQNLRSHLLTHP LSGLR+KE HFFD +W
Sbjct:  116 TALARG-PGGSDGLSRVSGARRRAESQGDRRGRR-NGGAGDWGDGGFRGGAARARKSGKREAVNGGGRAMAAIPTFHMLRVRKRDGEGEPLGSAPPRLEFLGGDGGGGGESATSAPGPFSLRRYESFEAYATEQSASGNAILPVPIVRPPGKGPEASRSIPLAIIIGTQKGGTQNLRSHLLTHPSLSGLRQKEAHFFDWFW 314
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BLAST of mRNA_E-fasciculatus_F_contig16361.4309.1 vs. uniprot
Match: A0A6H5JDR2_9PHAE (Sulfotransfer_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDR2_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 6.040e-36
Identity = 74/94 (78.72%), Postives = 78/94 (82.98%), Query Frame = 1 
Query:  607 SGASAWGPFSLRRYESFEAYAAEQSASGNATVPVPIVRRRGKGPEDSRSIPLAIIIGAQAR---GTQNLRSHLLTHPLLSGLRRKEVHFFDRYW 879
            S  SAW PFSL+RYESFEAYA EQSASGNA +PVPIVR  GKGPE SRSIPLAIIIG QA    GTQNLRSHLLTHP LSGLR+KE HFFD +W
Sbjct:  166 SAISAWAPFSLKRYESFEAYATEQSASGNAILPVPIVRPPGKGPEASRSIPLAIIIGTQASAKGGTQNLRSHLLTHPSLSGLRQKEAHFFDWFW 259
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BLAST of mRNA_E-fasciculatus_F_contig16361.4309.1 vs. uniprot
Match: A0A6H5K9W4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9W4_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 1.870e-13
Identity = 45/87 (51.72%), Postives = 54/87 (62.07%), Query Frame = 1 
Query:  637 LRRYESFEAYAAEQSASG------NATVPVPIVRRRGKGPEDSRS--IPLAIIIGAQARGTQNLRSHLLTHPLLSGLRRKEVHFFDR 873
            ++RY SFE YA E  ASG      N  + VP+V          RS  +PLAIIIG Q  GTQ+LR HL+THPLL+G+  KE HFFDR
Sbjct:  154 VKRYASFEEYAKEMFASGGGGSGRNRMLAVPVVDSPATVQSIGRSMALPLAIIIGVQKGGTQSLRHHLMTHPLLTGINGKEAHFFDR 240
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BLAST of mRNA_E-fasciculatus_F_contig16361.4309.1 vs. uniprot
Match: D7G3W5_ECTSI (Similar to heparan sulfate sulfotransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3W5_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 2.460e-12
Identity = 46/83 (55.42%), Postives = 51/83 (61.45%), Query Frame = 1 
Query:  637 LRRYESFEAYAAEQSASGNATVPVPIVRRRGKGPEDSR----SIPLAIIIGAQARGTQNLRSHLLTHPLLSGLRRKEVHFFDR 873
            +R Y SF AYAAE   S    +PVP+V      P D R    S+PL  IIG Q  GTQNLRSHLL HPLLSG+   E HFFDR
Sbjct:   83 VRHYNSFAAYAAEMLNS-TEPLPVPVVT-----PNDGRRPPMSLPLGTIIGVQKGGTQNLRSHLLQHPLLSGVPGTEAHFFDR 159
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16361.4309.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FST9_ECTSI1.340e-6569.15Sulfotransferase n=1 Tax=Ectocarpus siliculosus Ta... [more]
A0A6H5JDR2_9PHAE6.040e-3678.72Sulfotransfer_1 domain-containing protein n=1 Tax=... [more]
A0A6H5K9W4_9PHAE1.870e-1351.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3W5_ECTSI2.460e-1255.42Similar to heparan sulfate sulfotransferase n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16361contigE-fasciculatus_F_contig16361:252..2456 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score228.4
Seed ortholog evalue4.3e-57
Seed eggNOG ortholog2880.D7FST9
EggNOG free text desc.heparan sulfate sulfotransferase activity
EggNOG OGsKOG3704@1,KOG3704@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size882
Cds size882
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16361.4309.1prot_E-fasciculatus_F_contig16361.4309.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16361 252..2456 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928105.3571608-CDS-E-fasciculatus_F_contig16361:251..3461622928105.3571608-CDS-E-fasciculatus_F_contig16361:251..346Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16361 252..346 -
1695995821.66886-CDS-E-fasciculatus_F_contig16361:251..3461695995821.66886-CDS-E-fasciculatus_F_contig16361:251..346Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16361 252..346 -
1622928105.3796334-CDS-E-fasciculatus_F_contig16361:1034..11971622928105.3796334-CDS-E-fasciculatus_F_contig16361:1034..1197Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16361 1035..1197 -
1695995821.6797712-CDS-E-fasciculatus_F_contig16361:1034..11971695995821.6797712-CDS-E-fasciculatus_F_contig16361:1034..1197Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16361 1035..1197 -
1622928105.393468-CDS-E-fasciculatus_F_contig16361:1832..24561622928105.393468-CDS-E-fasciculatus_F_contig16361:1832..2456Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16361 1833..2456 -
1695995821.6890624-CDS-E-fasciculatus_F_contig16361:1832..24561695995821.6890624-CDS-E-fasciculatus_F_contig16361:1832..2456Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16361 1833..2456 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16361.4309.1

>prot_E-fasciculatus_F_contig16361.4309.1 ID=prot_E-fasciculatus_F_contig16361.4309.1|Name=mRNA_E-fasciculatus_F_contig16361.4309.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=294bp
VVAGVILVVCSRGIRPLQRGEEAPTARGGSAWMPPPPPPPPPPLLQRPAG
NRGFRGGGEAVAASGGSGPRIDGRTRRASALADRLGGDSGGGGGGGDTTN
TARARGSAGGSNGLSRGSSVARRADSQGDGRGRRRDGGAGDRGDGSQRGG
ASRVGKGGERGVVNGGGRAMAATPTFDLLRVRRRNDLESEYPQLKFLDGE
EKSGASAWGPFSLRRYESFEAYAAEQSASGNATVPVPIVRRRGKGPEDSR
SIPLAIIIGAQARGTQNLRSHLLTHPLLSGLRRKEVHFFDRYW*
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mRNA from alignment at E-fasciculatus_F_contig16361:252..2456-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16361.4309.1 ID=mRNA_E-fasciculatus_F_contig16361.4309.1|Name=mRNA_E-fasciculatus_F_contig16361.4309.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2205bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16361:252..2456- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGGTTGCCGGTGTCATCCTCGTGGTCTGTTCCCGCGGCATCCGACCACT
CCAGCGCGGAGAAGAAGCACCGACGGCGAGGGGGGGCTCCGCCTGGATGC
CGCCGCCGCCGCCGCCGCCGCCGCCGCCGCTTCTACAGAGACCGGCCGGA
AATCGCGGCTTTCGGGGAGGAGGAGAGGCCGTCGCCGCAAGCGGAGGAAG
CGGCCCTCGAATAGACGGGCGAACAAGAAGGGCTTCCGCTCTCGCTGATA
GACTGGGCGGCGACAGCGGCGGCGGCGGCGGCGGCGGCGACACAACCAAC
ACCGCTCGTGCCCGAGGCTCCGCCGGGGGGTCGAACGGCCTCTCGAGGGG
TTCCAGCGTTGCGAGGCGTGCCGACAGCCAAGGGGACGGCCGCGGGAGAA
GAAGAGACGGGGGCGCCGGCGATAGGGGGGATGGTAGCCAGAGGGGAGGT
GCTTCCCGCGTAGGGAAGGGCGGCGAGAGGGGAGTGGTCAACGGCGGCGG
CAGGGCCATGGCCGCGACCCCGACTTTCGATCTGTTGAGGGTGCGGAGAC
GGAATGACCTGGAGAGCGAATATCCGCAGCTGAAGTTCCTGGATGGAGAG
GAGAAGAGCGGTGCATCAGCATGGGTGAGCCTGCCGAACAGGCCACGTCA
CGCCTACCGTTTAGACGGCATTTAGTCCTGCATTCCTAACCTTCTAAAAA
AAAAAAGCCAACCCGAAATGTGGAACCTGTCAATAACATACGCAGGAAAA
ATATGAACCCTCATATTGATCACCAATGGACCCGCGTAGGAAACGTCGAC
GTTTGGCGGGATGGAATGGTGGATGGATATTTCGCAACCCTGCCGCGTTA
GAACCAATATATCTCTCTGCCCAAGCCCCCGGGCTGAAACATACTTGTCC
TCGGTCTGCCGGGGAGAGAAGAGGCCACAGCACAAGAAGGGTGGTAAACC
GCCGTTCGGTGAGACACTTTCAATCTTTATTATCATTTTTCTTGAGAAGC
TTGCACAACGTTCCGGACCCGTCCTTTTTTTGAGACTGTTGGCGTCGAAC
GCGGAGTGCATGGCGTTTGGTTTTGTCGCGAAAAGCAGCACGCTGGTGCT
GCACGTACGCAGCACGTGTGCATCGGCGAGATCTTAAACACCATTTTTTT
GTCAATCTTCCGCCGTGCGTGTGCGCACGCACCATGCTTTCGGGTCGAAA
CGCGCGAAACCGAAAAACAACAACAACAACAAAACCAGCCGCAGGACGGT
GACGGTGAGGGGCCGTTCTCCCTAAGACGCTACGAGAGCTTCGAGGCGTA
CGCGGCGGAGCAGTCGGCCAGCGGTAACGCCACCGTCCCCGTTCCTATCG
TCCGTCGCCGGGGGAAGGGACCGGAGGACTCCAGGTCTATTCCGCTGGCG
ATTATTATCGGGGCCCAGGCGAGTGCCAGTAGGGTTGGGGTTAGGGTTTA
CGTCGTCTTGTTGTTTCCGCATTCTTGTTCGTGTTGGTTACTTGGTTTGT
CTTCGCCCCTCTGGGGGAACGAAGCATGAGCGGAAACGTTAGCGTTGCCG
GCGCCCAAGGGGGAGGGAGCAGGCGGACAAGGCAGGTACTGCTGTACCGC
GATAGTCTTCGCGGTATGGTGCAGCAGTATGGCAGATAATACGGGACGGC
TTGGCTTGTACTCGTTAGGCGATTGCCCGGATTTGTTTGCTGCTGTCGAT
TTGGGTTATTATCCTGAAAATAGAGAGGAAGAAAGAGTTGGTGTATCAAA
ATCGCGAATATATTGTATAAAAAATAGCCTACCGAGCACAAGCCTTGGGG
CGACCGCGGTTTATTTCGCTGCCGCATGGAGCTCGGGAGAAGACGCTTGC
TTGCCTTACCTTTGTGACGAGCGTCACCGCTGCCCCCCCCTCCCCCCTGG
GGATCGTAATTGCTGATTAATCAGCAGCTGGCTGACTCACGGTGTCTGCG
CGTGTGGCAGACCGGCCGCCTGCTGATTCCCGAACGAAACCTTTTTCTCG
CGGCAAAACCGGGCCGCTCATTTGCCCCTGACGCCCTCCCCCGGCCTTCC
CACCCCGTCGACCCCGTGGACATTGTTCTGTTTGTTTGTTTATATATTTT
TTGCAGAAAGGGGGCACACAGAATCTCCGCAGCCATCTGCTGACACACCC
GTTGCTGTCAGGGTTGAGGCGCAAAGAGGTGCATTTTTTCGACCGGTACT
GGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16361:252..2456-

>mRNA_E-fasciculatus_F_contig16361.4309.1 ID=mRNA_E-fasciculatus_F_contig16361.4309.1|Name=mRNA_E-fasciculatus_F_contig16361.4309.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1764bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16361:252..2456- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGGTTGCCGGTGTCATCCTCGTGGTCTGTTCCCGCGGCATCCGACCACT
CCAGCGCGGAGAAGAAGCACCGACGGCGAGGGGGGGCTCCGCCTGGATGC
CGCCGCCGCCGCCGCCGCCGCCGCCGCCGCTTCTACAGAGACCGGCCGGA
AATCGCGGCTTTCGGGGAGGAGGAGAGGCCGTCGCCGCAAGCGGAGGAAG
CGGCCCTCGAATAGACGGGCGAACAAGAAGGGCTTCCGCTCTCGCTGATA
GACTGGGCGGCGACAGCGGCGGCGGCGGCGGCGGCGGCGACACAACCAAC
ACCGCTCGTGCCCGAGGCTCCGCCGGGGGGTCGAACGGCCTCTCGAGGGG
TTCCAGCGTTGCGAGGCGTGCCGACAGCCAAGGGGACGGCCGCGGGAGAA
GAAGAGACGGGGGCGCCGGCGATAGGGGGGATGGTAGCCAGAGGGGAGGT
GCTTCCCGCGTAGGGAAGGGCGGCGAGAGGGGAGTGGTCAACGGCGGCGG
CAGGGCCATGGCCGCGACCCCGACTTTCGATCTGTTGAGGGTGCGGAGAC
GGAATGACCTGGAGAGCGAATATCCGCAGCTGAAGTTCCTGGATGGAGAG
GAGAAGAGCGGTGCATCAGCATGGGTGGTTGCCGGTGTCATCCTCGTGGT
CTGTTCCCGCGGCATCCGACCACTCCAGCGCGGAGAAGAAGCACCGACGG
CGAGGGGGGGCTCCGCCTGGATGCCGCCGCCGCCGCCGCCGCCGCCGCCG
CCGCTTCTACAGAGACCGGCCGGAAATCGCGGCTTTCGGGGAGGAGGAGA
GGCCGTCGCCGCAAGCGGAGGAAGCGGCCCTCGAATAGACGGGCGAACAA
GAAGGGCTTCCGCTCTCGCTGATAGACTGGGCGGCGACAGCGGCGGCGGC
GGCGGCGGCGGCGACACAACCAACACCGCTCGTGCCCGAGGCTCCGCCGG
GGGGTCGAACGGCCTCTCGAGGGGTTCCAGCGTTGCGAGGCGTGCCGACA
GCCAAGGGGACGGCCGCGGGAGAAGAAGAGACGGGGGCGCCGGCGATAGG
GGGGATGGTAGCCAGAGGGGAGGTGCTTCCCGCGTAGGGAAGGGCGGCGA
GAGGGGAGTGGTCAACGGCGGCGGCAGGGCCATGGCCGCGACCCCGACTT
TCGATCTGTTGAGGGTGCGGAGACGGAATGACCTGGAGAGCGAATATCCG
CAGCTGAAGTTCCTGGATGGAGAGGAGAAGAGCGGTGCATCAGCATGGGG
GCCGTTCTCCCTAAGACGCTACGAGAGCTTCGAGGCGTACGCGGCGGAGC
AGTCGGCCAGCGGTAACGCCACCGTCCCCGTTCCTATCGTCCGTCGCCGG
GGGAAGGGACCGGAGGACTCCAGGTCTATTCCGCTGGCGATTATTATCGG
GGCCCAGGCGAGGGCCGTTCTCCCTAAGACGCTACGAGAGCTTCGAGGCG
TACGCGGCGGAGCAGTCGGCCAGCGGTAACGCCACCGTCCCCGTTCCTAT
CGTCCGTCGCCGGGGGAAGGGACCGGAGGACTCCAGGTCTATTCCGCTGG
CGATTATTATCGGGGCCCAGGCGAGGGGCACACAGAATCTCCGCAGCCAT
CTGCTGACACACCCGTTGCTGTCAGGGTTGAGGCGCAAAGAGGTGCATTT
TTTCGACCGGTACTGGTGAGGGGCACACAGAATCTCCGCAGCCATCTGCT
GACACACCCGTTGCTGTCAGGGTTGAGGCGCAAAGAGGTGCATTTTTTCG
ACCGGTACTGGTGA
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