mRNA_E-fasciculatus_F_contig1636.4308.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1636.4308.1
Unique NamemRNA_E-fasciculatus_F_contig1636.4308.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1636.4308.1 vs. uniprot
Match: A0A6H5KHA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHA7_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 8.130e-54
Identity = 92/123 (74.80%), Postives = 107/123 (86.99%), Query Frame = 1 
Query:   16 MACSE-ESFQIDSVVEFEDSLGFSGCYEAAAETFNDEAMYFLDGNQFIGNPGMYSSSSFDDDGDEHGVWVLGYYTTDGEFFRRCKDAYEEDSSTLHPADVLQWDCKDPDDTVSEVYPDVDAAV 381
            MACS+ +SF IDS V +EDSL F GCYEA+A+TFN E MYFLDG++FIG PG+YSS++FDDDGDEHG WVLGYYTTDGEFFRRCKDA EEDSSTLHPA+V+QWDCK+  DT  +VY D+DAAV
Sbjct:    1 MACSDGDSFTIDSDVTYEDSLSFDGCYEASADTFNSETMYFLDGDEFIGYPGIYSSNNFDDDGDEHGTWVLGYYTTDGEFFRRCKDADEEDSSTLHPAEVVQWDCKEYGDTDEDVYLDIDAAV 123
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BLAST of mRNA_E-fasciculatus_F_contig1636.4308.1 vs. uniprot
Match: D7G7I5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7I5_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 4.350e-12
Identity = 50/121 (41.32%), Postives = 67/121 (55.37%), Query Frame = 1 
Query:   55 VEFEDSLGFSGCYEAAAETFNDEAMYFLDGNQFIGNPGMYSSSSFDDDGDEHGVWVLG-YYTTDGE-----FFRRCKDAYEEDSSTLHPADVLQWDCKDPDDTVSEVYPDVDAAVTISCGC 399
            VE + +    GCYE    + ND   YFLDG +  G+  +Y+SSSF DD   H VWV+   Y  D E         CKDAYE+D++TLHP +V+QW+C     T  E Y  +D  + I+C C
Sbjct:   10 VEVDYNSAVDGCYEDTTTSVNDLDGYFLDGVEAGGSSIVYASSSFRDD---HFVWVVANVYDIDVEEGIFDVSITCKDAYEDDATTLHPVEVIQWNCYS---TADEDYTRLDE-IEITCSC 123
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BLAST of mRNA_E-fasciculatus_F_contig1636.4308.1 vs. uniprot
Match: A0A6H5K4G7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4G7_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 9.670e-7
Identity = 44/111 (39.64%), Postives = 55/111 (49.55%), Query Frame = 1 
Query:   85 GCYEAAAETFNDEAMYFLDGNQFIGNPGMYSSSSFDDDGDEHGVWVLG-YYTTDGE-----FFRRCKDAYEEDSSTLHPADVLQWDCKDPDDTVSEVYPDVDAAVTISCGC 399
            GCYE    + ND   YFLDG +  G      SS F        VWV+   Y  D E         CKDAYEED++TLHP +V+QW+C     T  E Y  +D  + I+C C
Sbjct:   20 GCYEDTTTSINDLDGYFLDGVEAGG------SSVF--------VWVVANVYDMDVEEGIFDAATTCKDAYEEDATTLHPVEVIQWNCYS---TADEDYTRLDE-IEITCSC 112
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1636.4308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KHA7_9PHAE8.130e-5474.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7I5_ECTSI4.350e-1241.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K4G7_9PHAE9.670e-739.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1636contigE-fasciculatus_F_contig1636:5481..9005 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size2638
Cds size903
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1636.4308.1prot_E-fasciculatus_F_contig1636.4308.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1636 5496..7285 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928105.235147-UTR-E-fasciculatus_F_contig1636:5480..54951622928105.235147-UTR-E-fasciculatus_F_contig1636:5480..5495Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1636 5481..5495 +
1695995821.619827-UTR-E-fasciculatus_F_contig1636:5480..54951695995821.619827-UTR-E-fasciculatus_F_contig1636:5480..5495Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1636 5481..5495 +
1622928105.3018925-UTR-E-fasciculatus_F_contig1636:7285..90051622928105.3018925-UTR-E-fasciculatus_F_contig1636:7285..9005Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1636 7286..9005 +
1695995821.6571934-UTR-E-fasciculatus_F_contig1636:7285..90051695995821.6571934-UTR-E-fasciculatus_F_contig1636:7285..9005Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1636 7286..9005 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928105.2567058-CDS-E-fasciculatus_F_contig1636:5495..56901622928105.2567058-CDS-E-fasciculatus_F_contig1636:5495..5690Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1636 5496..5690 +
1695995821.6285138-CDS-E-fasciculatus_F_contig1636:5495..56901695995821.6285138-CDS-E-fasciculatus_F_contig1636:5495..5690Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1636 5496..5690 +
1622928105.2719421-CDS-E-fasciculatus_F_contig1636:6384..68411622928105.2719421-CDS-E-fasciculatus_F_contig1636:6384..6841Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1636 6385..6841 +
1695995821.6378603-CDS-E-fasciculatus_F_contig1636:6384..68411695995821.6378603-CDS-E-fasciculatus_F_contig1636:6384..6841Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1636 6385..6841 +
1622928105.2850654-CDS-E-fasciculatus_F_contig1636:7034..72851622928105.2850654-CDS-E-fasciculatus_F_contig1636:7034..7285Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1636 7035..7285 +
1695995821.6471531-CDS-E-fasciculatus_F_contig1636:7034..72851695995821.6471531-CDS-E-fasciculatus_F_contig1636:7034..7285Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1636 7035..7285 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1636.4308.1

>prot_E-fasciculatus_F_contig1636.4308.1 ID=prot_E-fasciculatus_F_contig1636.4308.1|Name=mRNA_E-fasciculatus_F_contig1636.4308.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=301bp
MACSEESFQIDSVVEFEDSLGFSGCYEAAAETFNDEAMYFLDGNQFIGNP
GMYSSSSFDDDGDEHGVWVLGYYTTDGEFFRRCKDAYEEDSSTLHPADVL
QWDCKDPDDTVSEVYPDVDAAVTISCGCDSPTPSPTPAPTPSPTPSPTPS
PTASSTPSPTPSPTPSPIAPSRSTLSTPSPAAPSATTPSPTTPSPALGLA
VPATPSPELMTETSSGSSTPVGVIAGGAAAGVLVGGAVILFVLFKTGRLK
SRGSSRKSPADDVGSAPTSRPVLIGGTRVEATAAPIARQYPAACQYPQAF
*
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mRNA from alignment at E-fasciculatus_F_contig1636:5481..9005+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1636.4308.1 ID=mRNA_E-fasciculatus_F_contig1636.4308.1|Name=mRNA_E-fasciculatus_F_contig1636.4308.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3525bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1636:5481..9005+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGACATCGTTCCGACATGGCTTGCTCGGAGGAATCTTTCCAGATCGATTC
TGTCGTCGAGTTCGAGGATTCCTTAGGCTTCAGCGGTTGCTACGAGGCGG
CCGCGGAAACCTTCAATGATGAAGCCATGTACTTTTTGGACGGAAATCAG
TTCATCGGCAACCCGGGGATGTACTCTAGCAGTTCCTTCGATGACGACGG
CGACGAGCATGTGAGTGAGTCATCTGGACGTTCAGAGGTGTCAAGATGAC
CATATTTTGAAGCACTTGGATGATCTGATTCTGCGAGCCGAGCATTTGAG
CCGGCTGTGGGAACCACGCGGCTATGCATCCATTGGCGCAGGGAATGGCG
GTATGGGGGGTACAGTAGGTGGCCCTGGTAGGACCATCTCATGACACCTG
GCGGCTCAGTTTCATGACATGTCATGGGTAAGTCTTGACCGAGTGAAACT
ACAACGACTGTCGGGATTCTAATATTTCTTACCGTACCACAATCCTTGAT
CTACAACGGGTTGGCATGACTATTCAAAATAGATTGAGTGCGCCATTGCA
TAAAAAATACCTTGACGTGGGGGTAATATGTCAGCCATCACAGAGTTCGC
GACCGGACCATTGTCTGTCATGTTTTGTAGTTTTACTCGAGACAGGGCCA
TTTCGAGACGCTCGTCGGTTTCGTACATCTCGTTGGCGTTTGGACCTCTA
CCAACCGCTCAATGTGCGTCACTTGATCAAACGTCAGGCAAGGACATATT
GGATTTTTGAACGCTAGGGCTCTGTCATAGTCCACGTATTATAGTCGAGG
TGTGGGTGATTCGGCCTGGATTCGCCGTGGAAAATCGTGCGACACGCCGG
TGTGGCAGACTCTGACTCCCTACCGCCGCTTGCGTGGACAACGATTTTGT
GCAGGGTGTCTGGGTGCTGGGATACTACACAACGGACGGCGAATTCTTTC
GCAGATGCAAAGACGCTTACGAGGAAGATTCGTCCACACTGCATCCCGCA
GACGTCTTGCAGTGGGACTGCAAGGACCCTGACGATACTGTTTCTGAGGT
GTATCCTGATGTCGACGCCGCGGTGACCATTTCCTGTGGCTGTGACTCTC
CAACCCCCTCTCCAACTCCCGCCCCAACTCCCTCTCCAACTCCCTCTCCA
ACTCCCTCTCCGACTGCCTCATCGACTCCGTCACCGACTCCCTCCCCGAC
GCCCTCTCCGATTGCCCCCTCTCGGTCTACTCTGAGTACTCCCTCTCCGG
CTGCTCCCTCTGCGACTACTCCCTCTCCGACTACTCCCTCTCCGGCCCTC
GGCCTAGCCGTACCCGCAACCCCTTCACCTGAGTTGATGACGGAAACGTC
TTCCGGATCATGTGAGCAGTTTTCGCAGTGCTTGTCGAATTTGATATGGT
GTTCCATCCGGGCACGGTGACTGTGCTGCTTAGGAACTTACCTCCAGGAC
CAGGCCCACCCGTTCTCTGACTTCTCCTTCTGCACCACAAATTTGTTGAC
TTCCTTATTCCTTTTGTCTTGATTTCAATTGGTTGGCGAACTGTGCCAAA
ATAGCAACTCCGGTGGGCGTGATCGCTGGAGGTGCTGCGGCGGGCGTACT
GGTGGGTGGTGCGGTCATCCTGTTTGTCCTTTTTAAGACTGGTCGCTTGA
AGAGCCGCGGGAGCTCGCGAAAAAGCCCTGCTGATGACGTCGGGTCGGCA
CCTACTAGCCGCCCGGTGCTGATCGGGGGGACGCGAGTTGAGGCTACTGC
GGCTCCCATCGCGCGTCAGTACCCTGCTGCCTGTCAGTATCCGCAAGCGT
TTTGACTCGAGTTGAAGGTCGTGAGGCACGAGGAGTATCGTGTGCTCTCG
CCATTCACTGACGAAAGACGCCTTCTGCAGAGCACCGTTTCTGGATCAAT
AGGTGCACCCGCTACACTAGCAGGGACGCATTCGTGCGTTGTTCGATAAA
TCGAATGGCCCGGCAGAAAGAGTTGGTTCAGTCGACATCCCCGTTCGCTC
ATGTGGATGTTGGCTGTAAGGCTGCCTAAGCTGGGAACGCAATATTGTTG
GGATGGTTGTTGTTCATTTGCGACAAGTCAAGATCCCGCATCGATTCGGG
CGTATCGATACTTGCGGTGTGTGCCCTTACGTCATGTATTCCGGCCGTCA
CTGTACGACTGCGACGTAGAAAGCATGCATTCTCGTGATCGCAGGGTGTT
GGTATTGCAGAGGGTGTTTGTGAGTGAGTTGACCGAAAAGCCCTCCCGAG
GCTGCTGTGTCGGATTTCTCTTCTCCCCTCGCCACAGAGTTGGCTCCGGT
CTTTCTTACAGGTGTCTCCGAACTGGTAATGCACATCCAGCCGTGGTTCA
AGCGTTGGTGTTGCAGGTGGAGTGCCGGAGTCAAGCACCGCATTATGAAG
TGGCGATCAAAAGATTACCATGCATGTGTGAAACAACACACATCGCAAAC
TGTTGCCCAGATTCGAAGTGGGCGATGACGGGGGAATGAAATGGAATGAG
ACGGCGGCCAGAAAGAAAGTGAGAGCACTACAGGTGTCAACAAGGCTTTG
GGTGTGTGGGGAGAAACACGCAAAGAGCAGAATACCTTGCCGGCAGCGTC
GAGACTGGTTCTAGGCGATTTTGTACAAGTCGCAGGTTGACTCCTTACGT
GTATGAATTATGGGGTACTGGTGTGCGTTCTAGTGTGGTACTGCCTCTAG
ATCATGTACATCAGTGTGTGCGGAGCATTCGTAGAATGATCTATTGAAAT
ATTCACATTTCAAGCTTGTGAAGCACGGGGCATTTCCCCGCACGTTGGCA
CACGCTGATACCGCCTTGTGCTTGTCGTCGATACAAGTTGGGTATGATCG
GCCACCCTTCATTAAATTGCCGTGACCTGTGTGAAACTCTCGATCCTCCC
GCCCCTCGCCGCGAACAGTCCCGCAGTATGGTGAAGGTAGTTGGAATGGT
TGTTGTTCATTTGCGACAAGCCAAGATCCCGCATCGATTCGGGCGTATCG
AAACTTGAGGCCCTTTCGTCTATGTAGTCCAGCCGTCACTGTAAGACAGC
CACATCGAACGCATGCATTCTCGTGGTTTTTGTGAGTGATTTGGCTGAAA
ACCCTTGCCGAGGTTGCTGTGTGAGATTTATTTTCTCCCCTCGTCAAAGA
GTTGGCTCCGGTAATTCTTTTCGTGCAGGTCTCCGAACTGGTCATGCATG
GCCGTTCAAGCTTTGCAGGGGCAGTGGCGGCGATAAGTGTCGCCTTACAA
AGTGAGGCTTCATTTGTGTGCCGATCAAAAAGATTGCCGTATGCGAAAAA
ACACACATCGCATAATGTTGTCCAGATTCGAAGTGGATGATGACGGGGGA
ATGAAATGGAATGAGACGGCGGCGAAAGAGAAGAGAGAGCACTATAGGTG
TCAACAAGGCTCTGGGTTTCCGGGAGAAGCACGCAGAGAGCAGCATACCT
TGCCGGCGCATTCTAGACCAATGCTAGGCGATTGTGTACAAGTCGCATGT
TGATTCCTTTCGTGTATGAAATGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1636:5481..9005+

>mRNA_E-fasciculatus_F_contig1636.4308.1 ID=mRNA_E-fasciculatus_F_contig1636.4308.1|Name=mRNA_E-fasciculatus_F_contig1636.4308.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1806bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1636:5481..9005+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCTTGCTCGGAGGAATCTTTCCAGATCGATTCTGTCGTCGAGTTCGA
GGATTCCTTAGGCTTCAGCGGTTGCTACGAGGCGGCCGCGGAAACCTTCA
ATGATGAAGCCATGTACTTTTTGGACGGAAATCAGTTCATCGGCAACCCG
GGGATGTACTCTAGCAGTTCCTTCGATGACGACGGCGACGAGCATATGGC
TTGCTCGGAGGAATCTTTCCAGATCGATTCTGTCGTCGAGTTCGAGGATT
CCTTAGGCTTCAGCGGTTGCTACGAGGCGGCCGCGGAAACCTTCAATGAT
GAAGCCATGTACTTTTTGGACGGAAATCAGTTCATCGGCAACCCGGGGAT
GTACTCTAGCAGTTCCTTCGATGACGACGGCGACGAGCATGGTGTCTGGG
TGCTGGGATACTACACAACGGACGGCGAATTCTTTCGCAGATGCAAAGAC
GCTTACGAGGAAGATTCGTCCACACTGCATCCCGCAGACGTCTTGCAGTG
GGACTGCAAGGACCCTGACGATACTGTTTCTGAGGTGTATCCTGATGTCG
ACGCCGCGGTGACCATTTCCTGTGGCTGTGACTCTCCAACCCCCTCTCCA
ACTCCCGCCCCAACTCCCTCTCCAACTCCCTCTCCAACTCCCTCTCCGAC
TGCCTCATCGACTCCGTCACCGACTCCCTCCCCGACGCCCTCTCCGATTG
CCCCCTCTCGGTCTACTCTGAGTACTCCCTCTCCGGCTGCTCCCTCTGCG
ACTACTCCCTCTCCGACTACTCCCTCTCCGGCCCTCGGCCTAGCCGTACC
CGCAACCCCTTCACCTGAGTTGATGACGGAAACGTCTTCCGGATCATGGT
GTCTGGGTGCTGGGATACTACACAACGGACGGCGAATTCTTTCGCAGATG
CAAAGACGCTTACGAGGAAGATTCGTCCACACTGCATCCCGCAGACGTCT
TGCAGTGGGACTGCAAGGACCCTGACGATACTGTTTCTGAGGTGTATCCT
GATGTCGACGCCGCGGTGACCATTTCCTGTGGCTGTGACTCTCCAACCCC
CTCTCCAACTCCCGCCCCAACTCCCTCTCCAACTCCCTCTCCAACTCCCT
CTCCGACTGCCTCATCGACTCCGTCACCGACTCCCTCCCCGACGCCCTCT
CCGATTGCCCCCTCTCGGTCTACTCTGAGTACTCCCTCTCCGGCTGCTCC
CTCTGCGACTACTCCCTCTCCGACTACTCCCTCTCCGGCCCTCGGCCTAG
CCGTACCCGCAACCCCTTCACCTGAGTTGATGACGGAAACGTCTTCCGGA
TCATCAACTCCGGTGGGCGTGATCGCTGGAGGTGCTGCGGCGGGCGTACT
GGTGGGTGGTGCGGTCATCCTGTTTGTCCTTTTTAAGACTGGTCGCTTGA
AGAGCCGCGGGAGCTCGCGAAAAAGCCCTGCTGATGACGTCGGGTCGGCA
CCTACTAGCCGCCCGGTGCTGATCGGGGGGACGCGAGTTGAGGCTACTGC
GGCTCCCATCGCGCGTCAGTACCCTGCTGCCTGTCAGTATCCGCAAGCGT
TTTGACAACTCCGGTGGGCGTGATCGCTGGAGGTGCTGCGGCGGGCGTAC
TGGTGGGTGGTGCGGTCATCCTGTTTGTCCTTTTTAAGACTGGTCGCTTG
AAGAGCCGCGGGAGCTCGCGAAAAAGCCCTGCTGATGACGTCGGGTCGGC
ACCTACTAGCCGCCCGGTGCTGATCGGGGGGACGCGAGTTGAGGCTACTG
CGGCTCCCATCGCGCGTCAGTACCCTGCTGCCTGTCAGTATCCGCAAGCG
TTTTGA
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