mRNA_E-fasciculatus_F_contig16356.4306.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16356.4306.1
Unique NamemRNA_E-fasciculatus_F_contig16356.4306.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig16356.4306.1 vs. uniprot
Match: D7G6V0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6V0_ECTSI)

HSP 1 Score: 424 bits (1089), Expect = 6.120e-145
Identity = 247/288 (85.76%), Postives = 252/288 (87.50%), Query Frame = 1 
Query:   22 QDIVSALGWVRTMISDVQNVLLEFDDSDLEELAQMTLISLRILVGYAKSTHRSLAQLCRVPYQPRRERARLAVHADPNNASAEA----NPEAARVSELFQVDDDDDEGDDHEGGVLPWDPLAPRLLQEARRLAEEGKERPLTAAVVLAAXXXXXXXXXXXXXXXXXXXXXXXXGAATPMGRTVGHGTKNAVELGKLGWVASKLATKQTLRLASQELDRAGGVTGLACRAGEGALWTARHPVEAAMATVGMAADAASAAYEQAVWVGDLLATVGEEVFSGSVEPEGGGR 873
            QDIVSALGWVRTMISDVQNVLLEFDDSDLEELAQMTLISLRILVGYAKSTHRSLAQLCRVP+QPRRERAR+AVHADPNN         NP AARV ELFQVD+     D HEGG LPWDPLAPRLLQEARRLAEEGKERP TAAVVLAA      XXXXXXXXXXXXX     GAATP+GRTVGHGTKNAVELGKLGWVASKLATKQTLRLASQELDRAGGVTGLACRAGEGALWTARHPVEAAMATVGMAADAASAAYEQAVW+GDLLATV EEVFS   EPE G R
Sbjct:  163 QDIVSALGWVRTMISDVQNVLLEFDDSDLEELAQMTLISLRILVGYAKSTHRSLAQLCRVPFQPRRERARMAVHADPNNXXXXXXXXXNPAAARVGELFQVDEXXXXXDGHEGGGLPWDPLAPRLLQEARRLAEEGKERPFTAAVVLAAALPFSGXXXXXXXXXXXXXAALQWGAATPVGRTVGHGTKNAVELGKLGWVASKLATKQTLRLASQELDRAGGVTGLACRAGEGALWTARHPVEAAMATVGMAADAASAAYEQAVWMGDLLATVREEVFSRPAEPEDGCR 450
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16356.4306.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6V0_ECTSI6.120e-14585.76Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16356contigE-fasciculatus_F_contig16356:329..2381 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score426.8
Seed ortholog evalue8.3e-117
Seed eggNOG ortholog2880.D7G6V0
EggNOG OGs2EWU7@1,2SYK9@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_012150.1
Exons3
Model size885
Cds size885
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16356.4306.1prot_E-fasciculatus_F_contig16356.4306.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16356 329..2381 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928105.0378098-CDS-E-fasciculatus_F_contig16356:328..4511622928105.0378098-CDS-E-fasciculatus_F_contig16356:328..451Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16356 329..451 +
1695995821.5389714-CDS-E-fasciculatus_F_contig16356:328..4511695995821.5389714-CDS-E-fasciculatus_F_contig16356:328..451Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16356 329..451 +
1622928105.052903-CDS-E-fasciculatus_F_contig16356:1053..15151622928105.052903-CDS-E-fasciculatus_F_contig16356:1053..1515Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16356 1054..1515 +
1695995821.5512478-CDS-E-fasciculatus_F_contig16356:1053..15151695995821.5512478-CDS-E-fasciculatus_F_contig16356:1053..1515Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16356 1054..1515 +
1622928105.0717363-CDS-E-fasciculatus_F_contig16356:2081..23811622928105.0717363-CDS-E-fasciculatus_F_contig16356:2081..2381Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16356 2082..2381 +
1695995821.5613341-CDS-E-fasciculatus_F_contig16356:2081..23811695995821.5613341-CDS-E-fasciculatus_F_contig16356:2081..2381Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16356 2082..2381 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16356.4306.1

>prot_E-fasciculatus_F_contig16356.4306.1 ID=prot_E-fasciculatus_F_contig16356.4306.1|Name=mRNA_E-fasciculatus_F_contig16356.4306.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=295bp
MYRIRVIQDIVSALGWVRTMISDVQNVLLEFDDSDLEELAQMTLISLRIL
VGYAKSTHRSLAQLCRVPYQPRRERARLAVHADPNNASAEANPEAARVSE
LFQVDDDDDEGDDHEGGVLPWDPLAPRLLQEARRLAEEGKERPLTAAVVL
AAALPFSGAAVFLGAPVLAGDAALQWGAATPMGRTVGHGTKNAVELGKLG
WVASKLATKQTLRLASQELDRAGGVTGLACRAGEGALWTARHPVEAAMAT
VGMAADAASAAYEQAVWVGDLLATVGEEVFSGSVEPEGGGRRRK*
back to top

mRNA from alignment at E-fasciculatus_F_contig16356:329..2381+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16356.4306.1 ID=mRNA_E-fasciculatus_F_contig16356.4306.1|Name=mRNA_E-fasciculatus_F_contig16356.4306.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2053bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16356:329..2381+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTATCGTATACGTGTTATTCAGGATATCGTGAGCGCTCTTGGCTGGGT
GCGAACCATGATATCTGATGTGCAGAACGTGCTACTGGAGTTTGATGACA
GCGATTTGGAGGAGCTAGCTCAGGTAGGGAGGAGCGGAGGTAGGGAGGAG
CGGAGGTAGGGAGGAGCGGTTCAACTGTTCGGTGTCGTCGCCCCGAGTCG
TAGACCGTACGCACGGACGGTGCTTGCCGTTTAAGGTTCGGCCAAAGTTT
TTCGGTTCAACCTGTTGGTGCTTCATACATACCGCGTGTATCTTTAAAGC
GTCATCCCGGTGAATATTTTATCAATTTGCTGTGGATGTAGCTGGTAGCT
TGGCTGGTGGACGTCGGGTGCGATTTTTGGAAATGCACGTTCGGGAAGCG
AGGTCTCTCCAACTGCTGCTGTTGTATTCTTGGGGTGAAGAACAGCTCCT
ATCTCTTGCCAGCACCTTCATTTAACGTTCGTGCTGGTCCAACTGATGCA
CACACGTACACGGCACCCAGTAACACGAACGCGACAATGGCGAACGGACG
GAACAGGCACGGAAGGCCCTGATAAACTTGGACATTGAGTCTCGCCCTGT
TTTAGTACAAGATACGCCTGCCTCTGTGGCCATCACAGAACACGTCTCAG
TTGAGCGACTGGCTGATTGTCCCCGTTTCCCTTGGATCGACCGATTACCT
GCCCCCTCCTCAACTATTGTACCAGATGACCCTCATCTCTCTCCGAATAC
TGGTCGGCTACGCCAAGAGCACCCACAGGAGCCTCGCACAGCTGTGCCGC
GTGCCCTACCAACCCCGCCGAGAGCGCGCAAGACTGGCAGTTCACGCCGA
CCCTAACAACGCCTCCGCCGAAGCAAACCCCGAGGCGGCGCGTGTCAGTG
AGCTGTTCCAGGTAGACGATGACGATGACGAAGGCGACGACCATGAGGGG
GGGGTCTTGCCTTGGGATCCCCTCGCGCCCAGGCTGTTGCAGGAGGCCCG
GCGGTTGGCGGAGGAAGGGAAAGAGCGACCTTTGACGGCGGCGGTGGTGT
TGGCGGCCGCGTTGCCGTTCTCCGGGGCGGCGGTGTTCTTGGGAGCGCCG
GTGTTGGCCGGAGACGCGGCTCTGCAGTGGGGGGCTGCCACCCCCATGGG
GAGGACGGTGGGACACGGGACGAAGAATGCTGTGGAGGTGAGTGGGCATG
GCGGGTGCAGCGCCTGGGCCTACCGCGAAGTGCAAGGCGGCGGTGGGTAT
ACTTGCATCACACGGTTCTTTGCGAGTTTGGAGAAGGAAGGTGACGTATC
TACATGTAGCGGGGGGTTACCCGGGGGGAGGTTGTCCTGTCCTGTCTTGT
TATGACACAGAGGGTGTTTGGTGTAGAGGGTTGTGTACTGACTTGAGGTA
GGTAGGCCGCGGCCTCCCTCGAAGAACACACGGTACAGCAGTAGTAGTAG
GTTAATCGATCGCGCTTGCGGCGGAACGAACCAATGCTATTTAGCTCACA
TGGCTGCTGACTTTTGGCCGGCACGGCTTTCGGCGGACCACTTTTCCTTC
GTCCGACAGCATTATACGATACACTATTCAATACAATAGGCGCGACGCCC
GTAGCAGTTCCTGCTGTCCCCTGCATGCTGTACACGACATGTGCTTGCCG
TTCGCTGGGCTGTACCCCCTGCCGCTACAACATATGCCGTTGCTATCCCC
TTCTGTCTTTTCGGCATCCACCGCGACTGCGCTTTGATTCCCCCAACGTC
CAGCTCGGCAAGCTTGGCTGGGTAGCGAGCAAGTTAGCCACAAAGCAGAC
GCTGAGACTGGCGAGCCAGGAGCTAGACCGAGCCGGGGGAGTGACGGGAC
TGGCTTGTCGGGCGGGAGAGGGGGCTCTTTGGACGGCGAGACATCCGGTA
GAGGCCGCCATGGCTACGGTAGGCATGGCCGCTGACGCGGCAAGCGCGGC
GTACGAACAAGCGGTGTGGGTCGGCGATTTGCTCGCAACAGTCGGGGAGG
AGGTGTTCTCTGGGTCCGTGGAACCGGAAGGCGGTGGTAGAAGAAGAAAA
TAG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16356:329..2381+

>mRNA_E-fasciculatus_F_contig16356.4306.1 ID=mRNA_E-fasciculatus_F_contig16356.4306.1|Name=mRNA_E-fasciculatus_F_contig16356.4306.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1770bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16356:329..2381+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTATCGTATACGTGTTATTCAGGATATCGTGAGCGCTCTTGGCTGGGT
GCGAACCATGATATCTGATGTGCAGAACGTGCTACTGGAGTTTGATGACA
GCGATTTGGAGGAGCTAGCTCAGATGTATCGTATACGTGTTATTCAGGAT
ATCGTGAGCGCTCTTGGCTGGGTGCGAACCATGATATCTGATGTGCAGAA
CGTGCTACTGGAGTTTGATGACAGCGATTTGGAGGAGCTAGCTCAGATGA
CCCTCATCTCTCTCCGAATACTGGTCGGCTACGCCAAGAGCACCCACAGG
AGCCTCGCACAGCTGTGCCGCGTGCCCTACCAACCCCGCCGAGAGCGCGC
AAGACTGGCAGTTCACGCCGACCCTAACAACGCCTCCGCCGAAGCAAACC
CCGAGGCGGCGCGTGTCAGTGAGCTGTTCCAGGTAGACGATGACGATGAC
GAAGGCGACGACCATGAGGGGGGGGTCTTGCCTTGGGATCCCCTCGCGCC
CAGGCTGTTGCAGGAGGCCCGGCGGTTGGCGGAGGAAGGGAAAGAGCGAC
CTTTGACGGCGGCGGTGGTGTTGGCGGCCGCGTTGCCGTTCTCCGGGGCG
GCGGTGTTCTTGGGAGCGCCGGTGTTGGCCGGAGACGCGGCTCTGCAGTG
GGGGGCTGCCACCCCCATGGGGAGGACGGTGGGACACGGGACGAAGAATG
CTGTGGAGATGACCCTCATCTCTCTCCGAATACTGGTCGGCTACGCCAAG
AGCACCCACAGGAGCCTCGCACAGCTGTGCCGCGTGCCCTACCAACCCCG
CCGAGAGCGCGCAAGACTGGCAGTTCACGCCGACCCTAACAACGCCTCCG
CCGAAGCAAACCCCGAGGCGGCGCGTGTCAGTGAGCTGTTCCAGGTAGAC
GATGACGATGACGAAGGCGACGACCATGAGGGGGGGGTCTTGCCTTGGGA
TCCCCTCGCGCCCAGGCTGTTGCAGGAGGCCCGGCGGTTGGCGGAGGAAG
GGAAAGAGCGACCTTTGACGGCGGCGGTGGTGTTGGCGGCCGCGTTGCCG
TTCTCCGGGGCGGCGGTGTTCTTGGGAGCGCCGGTGTTGGCCGGAGACGC
GGCTCTGCAGTGGGGGGCTGCCACCCCCATGGGGAGGACGGTGGGACACG
GGACGAAGAATGCTGTGGAGCTCGGCAAGCTTGGCTGGGTAGCGAGCAAG
TTAGCCACAAAGCAGACGCTGAGACTGGCGAGCCAGGAGCTAGACCGAGC
CGGGGGAGTGACGGGACTGGCTTGTCGGGCGGGAGAGGGGGCTCTTTGGA
CGGCGAGACATCCGGTAGAGGCCGCCATGGCTACGGTAGGCATGGCCGCT
GACGCGGCAAGCGCGGCGTACGAACAAGCGGTGTGGGTCGGCGATTTGCT
CGCAACAGTCGGGGAGGAGGTGTTCTCTGGGTCCGTGGAACCGGAAGGCG
GTGGTAGAAGAAGAAAATAGCTCGGCAAGCTTGGCTGGGTAGCGAGCAAG
TTAGCCACAAAGCAGACGCTGAGACTGGCGAGCCAGGAGCTAGACCGAGC
CGGGGGAGTGACGGGACTGGCTTGTCGGGCGGGAGAGGGGGCTCTTTGGA
CGGCGAGACATCCGGTAGAGGCCGCCATGGCTACGGTAGGCATGGCCGCT
GACGCGGCAAGCGCGGCGTACGAACAAGCGGTGTGGGTCGGCGATTTGCT
CGCAACAGTCGGGGAGGAGGTGTTCTCTGGGTCCGTGGAACCGGAAGGCG
GTGGTAGAAGAAGAAAATAG
back to top