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Homology
BLAST of mRNA_E-fasciculatus_F_contig1635.4303.1 vs. uniprot
Match: D7FJW0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJW0_ECTSI) HSP 1 Score: 170 bits (430), Expect = 4.010e-43 Identity = 144/358 (40.22%), Postives = 171/358 (47.77%), Query Frame = 1
Query: 202 FTCENGILEDGYCCSKTCGVGGCGGKGCSSRNGKKTADDCCFSRITDLCSVTGCAPCKMDDD-----------------------------------------------------AGPRPTPSPIRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT-------------------LMLGEHQGACCKDGSQHFRVAVDNLAQDEVFKQGPITIFASCSAGWFEGQDSAQMLLSVQVKPDDSESDTEYVMVSWADEIETATHAAPFSTIPLATTRPDEYMWTDIGTYGIISIATASGHYVSFDGAGIMSTVVSREDEPGWEFASEINPPTDHYITKRCVFIGTLNV 1059
F CENGIL SRN TADDCCFS IT+ CSV GCAPC MD+D P P R XXXXXXXXXXXXXXXXXXXXXXX + G+CC S+ RV VD+ Q+EV+ GPI+IFA C A A+++LSV V P DS+S+ EYVM SW D+I+TAT P+ST P + EY WTD+G+YG+ISIATASGHYV FDG+ IM++VVS E+EPGW AS I TD TKRC+ +G L V
Sbjct: 106 FLCENGILXXXXXXXXXXXXXXXXXXXXXSRNDVTTADDCCFSHITEPCSVKGCAPCMMDEDDLETDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEDGGDEXXDPEPEADRXXXXXXXXXXXXXXXXXXXXXXXXGEHGRRKKPNQEDCDEDSEQXXXXXXXXXXXXXXXXXXXXXSDGDGSCCNKTSELLRVVVDDGVQEEVYSNGPISIFAGCMAD--NEAFPARVILSVLVTPGDSDSEMEYVMTSWEDDIQTATSDEPYSTFPTSLNLA-EYTWTDVGSYGMISIATASGHYVGFDGSSIMASVVSSEEEPGWGCASRIKE-TDDMGTKRCIIMGPLEV 459
BLAST of mRNA_E-fasciculatus_F_contig1635.4303.1 vs. uniprot
Match: D7FJV5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJV5_ECTSI) HSP 1 Score: 91.7 bits (226), Expect = 1.770e-17 Identity = 43/64 (67.19%), Postives = 51/64 (79.69%), Query Frame = 1
Query: 886 IISIATASGHYVSFDGAGIMSTVVSREDEPGWEFASEINPPTDHYITKRCVFIGTLNVQGASTN 1077
I +++ SG S GAG+M+TVVSREDEP WEFAS+I+PPTD +ITKRCV IGTLNV G STN
Sbjct: 147 IKTLSRGSGQPNSRRGAGMMNTVVSREDEPAWEFASQISPPTDDFITKRCVIIGTLNVHGTSTN 210
BLAST of mRNA_E-fasciculatus_F_contig1635.4303.1 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI) HSP 1 Score: 75.1 bits (183), Expect = 2.100e-10 Identity = 58/132 (43.94%), Postives = 65/132 (49.24%), Query Frame = 1
Query: 1 LCSVTGCAPCKMDDDAEPPRLDRDNGRQYRGGPRDGGARRXXXXXXXXXXXXXXXXXXXXXXXGRAVFTCENGILEDGYCCSKTCGVGGCGGKGCSSRNGKKTADDCCFSRITDLCSVTGCAPCKMDDDAGP 396
LCSVTG APC +D D P XXXXXXXXXX FTC+ G+L+ YCCS C CGG GCS R G T DCC S I++LCSVTG APC +D D P
Sbjct: 203 LCSVTGAAPCIVDGDTSPTXX--------------------------------XXXXXXXXXXXSGSFTCD-GVLKGDYCCSAGCVE--CGGSGCSDRGGGLTGADCCTSDISNLCSVTGAAPCIVDGDTSP 299
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 60.5 |
| Seed ortholog evalue | 1.8e-06 |
| Seed eggNOG ortholog | 2880.D7FJ68 |
| Preferred name | MTPAP |
| KEGG ko | ko:K08342,ko:K16462,ko:K17478,ko:K18060 |
| KEGG Pathway | ko04136,ko04138,ko04140,map04136,map04138,map04140 |
| EggNOG free text desc. | importin-alpha family protein binding |
| EggNOG OGs | COG0086@1,KOG0260@2759,KOG4725@1,KOG4725@2759 |
| EC | 2.7.7.19 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko01000,ko01002,ko01009,ko03029,ko03036,ko03110,ko04131,ko04812 |
| Hectar predicted targeting category | other localisation |
| Exons | 7 |
| Model size | 1727 |
| Cds size | 1047 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1635.4303.1 >prot_E-fasciculatus_F_contig1635.4303.1 ID=prot_E-fasciculatus_F_contig1635.4303.1|Name=mRNA_E-fasciculatus_F_contig1635.4303.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=349bp
MDDDAEPPRLDRDNGRQYRGGPRDGGARRGDRGGGDRADGGGGGSRGDRG
GDGRAVFTCENGILEDGYCCSKTCGVGGCGGKGCSSRNGKKTADDCCFSR
ITDLCSVTGCAPCKMDDDAGPRPTPSPIRSPTPSPTSSPTPSPTLSPTPS
PTPSPTPSPTRSPTPSPTPSPTLMLGEHQGACCKDGSQHFRVAVDNLAQD
EVFKQGPITIFASCSAGWFEGQDSAQMLLSVQVKPDDSESDTEYVMVSWA
DEIETATHAAPFSTIPLATTRPDEYMWTDIGTYGIISIATASGHYVSFDG
AGIMSTVVSREDEPGWEFASEINPPTDHYITKRCVFIGTLNVQGASTN* back to topmRNA from alignment at E-fasciculatus_F_contig1635:3..4453+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig1635.4303.1 ID=mRNA_E-fasciculatus_F_contig1635.4303.1|Name=mRNA_E-fasciculatus_F_contig1635.4303.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4451bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1635:3..4453+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTCTGCTCGGTGACAGGGTGTGCCCCGTGCAAAATGGACGGTGAGTGCTG
CTGCTGCTGTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCGGCTTCT
GTTGCTGTGGTTGTGGTTGTGGTTGTGGTTGTTGTTGTTGTTGTTGTTCA
TGCGACACATGTGCATACAAATAATCGGCGAGGAATGACTACCAGCGAGT
GCGGGGTTGTCTTGCTTAACGCATAGGTTCTTCTCCTCGACGCGACGATC
GCGCTCTAGACGGCGAGGTAGCGTCGACAGCGGTGTAAAAAGAACGATTG
CTCGGAGCATTTGAGTCTGCGTTCGATATCACTTCTACGTCGCCGACACC
GATGCGCCTGATGTGTTTACCGCTAGGAGTATACACCAACGATAGTGATG
TATACACCCGTCGCTCGCAACTTGTCATAGTCGGGTGCGCGACGTTTGCG
AAGACGAAGAGTGTAGATTCAACGGAGCATAACAGTTTGAAATATTCCGG
CATGACGCAATGACCAGCATCCCTTTGCCGTACTGCCCCTCCCTGTACTT
TCTTACTCATGGATGTTGTACGTCTCCACTTCGTCTCGAAAACTTCCTCT
CTCTTGTTTGCAATTATCCTCTCGAAGACGACGCGGAGCCCCCCAGGCTG
GACCGCGACAATGGACGCCAATACCGTGGTGGCCCTCGTGATGGTGGTGC
TCGTCGTGGCGATCGTGGCGGTGGTGACCGTGCCGATGGTGGTGGTGGTG
GTAGCCGCGGTGATCGAGGTGGCGATGGTAGGGCTGTCTTCACTTGCGAG
AATGGCATCCTCGAGGACGGGTACTGCTGTTCGGTAAGACTTTCAGATTT
GGTACCACATGTACGGGTCTGGTCAGAATAGCTGGAGGACAGTACTGGCA
GCCTTGAGATCGTTTGCGTTGCCGAAATCATGGTCGTCGGTGCTATGCCG
CCCTCATCCTGTATGGGAGGATGCCTCTCATTTTTCATCACTACGCCACT
TGCACGTCGTTCGAAACCTTGCTGTGATGACAAAACCATGCTTGTCAAAC
GACAGAAAACTTGTGGGGTGGGTGGGTGCGGTGGCAAAGGATGCAGTTCG
AGGAACGGCAAGAAGACAGCGGACGACTGTTGCTTCTCCCGCATTACCGA
TCTCTGCTCGGTGACAGGGTGTGCCCCGTGCAAAATGGACGGTGAGTGCT
GCTGCTGCTGTTGCTGCTGCGCTTGCTGTTTTGTTGTTGTAAGTCACTAC
ACTAGCTCATGTAGCCCACGGTCACGGCCGAAGCTCTATTTTATTGTTTT
CGTGGGGGAAAATTGGACCCAACCTGTCGCTCCAGACACTTTTAGGCTCT
TCTGTTTTTCCTCAGTTGCGTCTTCGGGGTGCACTTTAGGTGAATACTGT
GCGCTTGCGTTGTAGAGACGGTCGACGAACAGAGCAAAATGAACGGTCTA
ACATGCATGGACATGGGTCACCGATGGGTGGAAGTCCCAACGTCTCGACT
TCGTGTGCTAATTATATTTTCTTCTTGTGAGACCAATCCCTCTCTCCGAT
CATTTGGTTGCTTCCGCGCGAAGACGACGCTGGACCTAGGCCAACGCCTT
CGCCGATCCGTTCGCCGACGCCTTCGCCGACATCGTCACCAACGCCATCG
CCGACGCTTTCGCCTACGCCTTCACCAACACCATCGCCAACGCCTTCGCC
GACACGTTCGCCGACACCTTCCCCGACTCCATCGCCGACGCTTATGCTGG
GAGAACACCAAGGAGCGTGTTGCAAAGACGGATCACAACACTTTCGCGTT
GCAGTGGACAACCTGGCTCAAGACGAGGTGATGAATGGAACGGCGCCGAA
AATGTAGCAGATTCGGCGTGAACTCGACTTGACGACCCGAATAGATCCTA
CCATTTACGTGCAGGCAGCTGAGGCAACTACCATTCATTGTAAAATCATT
TTAAGCCTATCTGCTCCCAGACCCTCTGTGTAAAACACTTGACTACCGTG
TGAAGCTTTCTATCCGACCTCCGCCGAAATGCCTTCAACAAAGACCAAAC
AAGATGCACTTAGCTAATTGTACCATAATACGAACCAAGTCTTGAAACCT
CCGATGCACTGACAGTCGTCCAAGTGCCGAAGCCTGTGTACATCATATAA
TACATCTGCTGCTTGCTAAAAAGCCCGCGGCCCTGATGGTGCCCAATATA
TCCAACGAAACACAACCAGGTCTTCAAGCAGGGCCCCATCACAATCTTCG
CGAGCTGCAGCGCTGGTTGGTTCGAAGGGCAAGACTCTGTGAGTGGATTA
TATTCAGTTCATTAGTGTTGTTCTCCTTGCAATTTCTTTTTTAGTTGATC
GTTCGGCATGCGGCAGAGGGTTGACTCGAACAAGAAGACAAGACTCGGGA
GCAAACCCACTGCAGATCGAACCCTCAGTAGGAGCAACAACCTGCGTCTG
ATGGGTCAGGTGAACCCCTCCCTGATATAGTGCTTTAGGCCCACTACTGG
CCGCAGCCATACTATCCTCTCTTGCGCCTATGAGTTGCTTGGGCGTGGTT
ACACCCCGAGATTCTGTAGGGGAGGAGCAGCATAGCATGTCCGCGCGCCT
CCTCCATCATCGCGCTGAACACCAACTAACTACAGATTTCTCGTTAGAGT
TCTATTGCCATGCATTGCGGCAACGGATACACCCCCAGGCCGATGACGAC
CCGCACATTTCGGGCACGCCGAATATCAACAACCAGGTAGTCTACAAGTA
GACATCGTATTTGGACAGCATGGAATGACGAAAATACGCTAAATAGACTA
TTGCTACATCGTTTTTCGCTTCCGACAGTGCCAGTCTCTTGTTCCTCGTT
ACCACTGGCAAGGAATAGATTTCGACGCAAAAAAATGTTGGAGAAGCTGA
CCACAGCAACAATGACCAAATTATTGTTTTGATGTATCCACACCGCCGGT
CAAATTATTAGTGTCTCCTTCTTGCGCGCATACAGCCGGGGTGTAAGAAC
AAAATATTGTTTCTCCTCTCAATCCGGCATCACACCTTCCCTTTGCCACT
CCATGGAATTACTGTATATTCACGTTCCAGGCTCAGATGTTGTTGAGTGT
GCAAGTCAAGCCGGACGACTCAGAGTCCGACACGGAGTACGTCATGGTTT
CGTGGGCGGATGAGATCGAGACCGCCACCCACGCCGCACCATTCTCCACC
ATACCGCTCGCGACAACTCGTCCAGACGAGTACATGTGGACCGACATTGG
CACCTACGGGATTATTTCGATCGCGACTGCTTCTGGCCACTACGTCAGCT
TTGACGGTGTGTTGGGGTGTGGATTGTGCAATATAGACGTTCGATTTTCT
GTTGCTCTTTTTTTTCGGGTGCAGTTCTCTCCCAGCGAACCGAACTAACC
CCATCACGTTGTTATCGATGAGCGCAGCCTTCCTTACATATCGAATTGCG
ATGGAGTCGAGTACATATTTATGATTTGATCCAAAGTCATGCTTTCGATA
CCGTTGTTACGTGAGTGAGCGCCTATCAAATTTCAACTGCTACGCAATCA
GTAGCGCCAGCATTTGACTTCGTTCTTTGCTTTTCTTTTCTCTACTGACT
TCACTCGTGTGTTCGACACTGGCTTGTACCTTGTATCAATCTTGCAATTG
TTCAGGTGCCGGAATCATGAGCACCGTCGTTTCCCGCGAAGACGAGCCTG
GATGGGAATTTGCAAGCGAGATCAACCCGCCGACCGACCATTACATTACC
AAGCGCTGCGTATTTATCGGTACCCTCAATGTACAGGGGGCAAGCACCAA
CTGACGCGGACACCTTCCGTGGTCACATGCATTAAGGAGATAAGATGCTG
AGAAGTACAATATTCGTAAAAAAATATGATGTGCCAATATTTCATGGAAC
AATTGAGTGCGTGGCACATAATTTATACCTGTCTGATATCTCTTAGGTGG
TAGAGGTATCTTTGCCCCTCTAGGGAGCACGTTTAGTTTGATATGTGGGC
ATGCTTCCATGTTTCACGAAAGTCGATTCCGATATGTCAACTGTAGCTGC
TTGAATGTTGGGTTCTAGGAACGACAATGGATTTTTTTCACTTTTACATT
GGGAATTGACGTTTAATCTCTCAGAGATGCGAGTGTAACGGGAGAGTATG
TAGTGCTCCCCCAAATATTTCTGCTTTACTGGCTCTGGGAAAGGGCAATG
TTTTACGTAGTTTGGTTCAAGCTCGAAGTGATACTCATGTGGCGAAAACT
TACATGGGAAGGACTGCCTGGTTGGTTATTGTATTGTTCACGTGCGGACA
GCCGTACATCTGATTCTGGCAATGCAACGAAGAGCGGGTTGGCATCGTGG
TTCCACGCAGGGCATACAACAACGGATAGGGCGGAGGGTCACTCGATAGT
AAAAGTCGTCCTGATCAGCACTTTTCACTTGTTGTATGGGAAAAAACGCG
T back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig1635:3..4453+ >mRNA_E-fasciculatus_F_contig1635.4303.1 ID=mRNA_E-fasciculatus_F_contig1635.4303.1|Name=mRNA_E-fasciculatus_F_contig1635.4303.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2094bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1635:3..4453+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGACGATGGACGACGACGCGGAGCCCCCCAGGCTGGACCGCGACAATG
GACGCCAATACCGTGGTGGCCCTCGTGATGGTGGTGCTCGTCGTGGCGAT
CGTGGCGGTGGTGACCGTGCCGATGGTGGTGGTGGTGGTAGCCGCGGTGA
TCGAGGTGGCGATGGTAGGGCTGTCTTCACTTGCGAGAATGGCATCCTCG
AGGACGGGTACTGCTGTTCGACGACGCGGAGCCCCCCAGGCTGGACCGCG
ACAATGGACGCCAATACCGTGGTGGCCCTCGTGATGGTGGTGCTCGTCGT
GGCGATCGTGGCGGTGGTGACCGTGCCGATGGTGGTGGTGGTGGTAGCCG
CGGTGATCGAGGTGGCGATGGTAGGGCTGTCTTCACTTGCGAGAATGGCA
TCCTCGAGGACGGGTACTGCTGTTCGAAAACTTGTGGGGTGGGTGGGTGC
GGTGGCAAAGGATGCAGTTCGAGGAACGGCAAGAAGACAGCGGACGACTG
TTGCTTCTCCCGCATTACCGATCTCTGCTCGGTGACAGGGTGTGCCCCGT
GCAAAATGGACGAAAACTTGTGGGGTGGGTGGGTGCGGTGGCAAAGGATG
CAGTTCGAGGAACGGCAAGAAGACAGCGGACGACTGTTGCTTCTCCCGCA
TTACCGATCTCTGCTCGGTGACAGGGTGTGCCCCGTGCAAAATGGACGAC
GACGCTGGACCTAGGCCAACGCCTTCGCCGATCCGTTCGCCGACGCCTTC
GCCGACATCGTCACCAACGCCATCGCCGACGCTTTCGCCTACGCCTTCAC
CAACACCATCGCCAACGCCTTCGCCGACACGTTCGCCGACACCTTCCCCG
ACTCCATCGCCGACGCTTATGCTGGGAGAACACCAAGGAGCGTGTTGCAA
AGACGGATCACAACACTTTCGCGTTGCAGTGGACAACCTGGCTCAAGACG
AGACGACGCTGGACCTAGGCCAACGCCTTCGCCGATCCGTTCGCCGACGC
CTTCGCCGACATCGTCACCAACGCCATCGCCGACGCTTTCGCCTACGCCT
TCACCAACACCATCGCCAACGCCTTCGCCGACACGTTCGCCGACACCTTC
CCCGACTCCATCGCCGACGCTTATGCTGGGAGAACACCAAGGAGCGTGTT
GCAAAGACGGATCACAACACTTTCGCGTTGCAGTGGACAACCTGGCTCAA
GACGAGGTCTTCAAGCAGGGCCCCATCACAATCTTCGCGAGCTGCAGCGC
TGGTTGGTTCGAAGGGCAAGACTCTGTCTTCAAGCAGGGCCCCATCACAA
TCTTCGCGAGCTGCAGCGCTGGTTGGTTCGAAGGGCAAGACTCTGCTCAG
ATGTTGTTGAGTGTGCAAGTCAAGCCGGACGACTCAGAGTCCGACACGGA
GTACGTCATGGTTTCGTGGGCGGATGAGATCGAGACCGCCACCCACGCCG
CACCATTCTCCACCATACCGCTCGCGACAACTCGTCCAGACGAGTACATG
TGGACCGACATTGGCACCTACGGGATTATTTCGATCGCGACTGCTTCTGG
CCACTACGTCAGCTTTGACGGCTCAGATGTTGTTGAGTGTGCAAGTCAAG
CCGGACGACTCAGAGTCCGACACGGAGTACGTCATGGTTTCGTGGGCGGA
TGAGATCGAGACCGCCACCCACGCCGCACCATTCTCCACCATACCGCTCG
CGACAACTCGTCCAGACGAGTACATGTGGACCGACATTGGCACCTACGGG
ATTATTTCGATCGCGACTGCTTCTGGCCACTACGTCAGCTTTGACGGTGC
CGGAATCATGAGCACCGTCGTTTCCCGCGAAGACGAGCCTGGATGGGAAT
TTGCAAGCGAGATCAACCCGCCGACCGACCATTACATTACCAAGCGCTGC
GTATTTATCGGTACCCTCAATGTACAGGGGGCAAGCACCAACTGAGTGCC
GGAATCATGAGCACCGTCGTTTCCCGCGAAGACGAGCCTGGATGGGAATT
TGCAAGCGAGATCAACCCGCCGACCGACCATTACATTACCAAGCGCTGCG
TATTTATCGGTACCCTCAATGTACAGGGGGCAAGCACCAACTGA back to top
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