mRNA_E-fasciculatus_F_contig16349.4302.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16349.4302.1
Unique NamemRNA_E-fasciculatus_F_contig16349.4302.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig16349.4302.1 vs. uniprot
Match: D8LHG3_ECTSI (Serine palmitoyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHG3_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 1.050e-48
Identity = 83/87 (95.40%), Postives = 87/87 (100.00%), Query Frame = 1 
Query:    4 QDLSKPNLSSREIDEIIEDWKPEPLVPPLTEEETSEAESMPVVREFSGPYLRVEGVEKPLLNMANFDFLGMGQREELKQAAVQALDK 264
            +DLSKPNLSSREIDEII+DWKPEPLVPPLTEEETSEAESMPVV+EFSGPYLRVEG+EKPLLNMANFDFLGMGQREELKQAAVQALDK
Sbjct:   40 KDLSKPNLSSREIDEIIDDWKPEPLVPPLTEEETSEAESMPVVQEFSGPYLRVEGIEKPLLNMANFDFLGMGQREELKQAAVQALDK 126
[Close]
BLAST of mRNA_E-fasciculatus_F_contig16349.4302.1 vs. uniprot
Match: A0A6H5KV36_9PHAE (Aminotran_1_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV36_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 4.410e-47
Identity = 83/87 (95.40%), Postives = 87/87 (100.00%), Query Frame = 1 
Query:    4 QDLSKPNLSSREIDEIIEDWKPEPLVPPLTEEETSEAESMPVVREFSGPYLRVEGVEKPLLNMANFDFLGMGQREELKQAAVQALDK 264
            +DLSKPNLSSREIDEII+DWKPEPLVPPLTEEETSEAESMPVV+EFSGPYLRVEG+EKPLLNMANFDFLGMGQREELKQAAVQALDK
Sbjct:  145 KDLSKPNLSSREIDEIIDDWKPEPLVPPLTEEETSEAESMPVVQEFSGPYLRVEGIEKPLLNMANFDFLGMGQREELKQAAVQALDK 231
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BLAST of mRNA_E-fasciculatus_F_contig16349.4302.1 vs. uniprot
Match: K3X182_GLOUD (Aminotran_1_2 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X182_GLOUD)

HSP 1 Score: 82.8 bits (203), Expect = 1.590e-16
Identity = 38/80 (47.50%), Postives = 59/80 (73.75%), Query Frame = 1 
Query:   25 LSSREIDEIIEDWKPEPLVPPLTEEETSEAESMPVVREFSGPYLRVEGVEKPLLNMANFDFLGMGQREELKQAAVQALDK 264
            L+ +EIDE++ +W PEP+VPP    +   A+ + +V      +++++G+EKPLLN+A FDFLG+G R+ELK+AAV+AL K
Sbjct:   78 LTEKEIDELVAEWTPEPIVPPAAAHQVK-AKPIGIVESQPDTHIKLQGIEKPLLNLATFDFLGLGSRKELKEAAVKALTK 156
[Close]
BLAST of mRNA_E-fasciculatus_F_contig16349.4302.1 vs. uniprot
Match: H3GT37_PHYRM (Aminotran_1_2 domain-containing protein n=21 Tax=Peronosporaceae TaxID=4777 RepID=H3GT37_PHYRM)

HSP 1 Score: 81.3 bits (199), Expect = 5.550e-16
Identity = 36/80 (45.00%), Postives = 57/80 (71.25%), Query Frame = 1 
Query:   25 LSSREIDEIIEDWKPEPLVPPLTEEETSEAESMPVVREFSGPYLRVEGVEKPLLNMANFDFLGMGQREELKQAAVQALDK 264
            LS REID++ E+W PEP++PP    + ++++ + +V +  G +L+++G   PLLN+A FDFLG+G R ELK+ AV+ L K
Sbjct:   78 LSEREIDDLCEEWTPEPIIPPEAVVDVNKSKPIGIVEDTPGTHLKLQGYANPLLNLATFDFLGLGSRPELKEVAVKTLTK 157
[Close]
BLAST of mRNA_E-fasciculatus_F_contig16349.4302.1 vs. uniprot
Match: A0A3R7FXY7_9STRA (Aminotran_1_2 domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7FXY7_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.040e-15
Identity = 35/80 (43.75%), Postives = 58/80 (72.50%), Query Frame = 1 
Query:   25 LSSREIDEIIEDWKPEPLVPPLTEEETSEAESMPVVREFSGPYLRVEGVEKPLLNMANFDFLGMGQREELKQAAVQALDK 264
            LS REIDE+ +DW+PEP++PP    + ++++ + +V      +L+++G+ KP+LN+A FDFLG+G R ELK+ A++ L K
Sbjct:   78 LSEREIDELCDDWQPEPMIPPNVVVDVNKSKPIGIVEATPDTHLKLQGLAKPVLNLATFDFLGLGARPELKEVAIKTLTK 157
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BLAST of mRNA_E-fasciculatus_F_contig16349.4302.1 vs. uniprot
Match: A0A5D6XZ52_9STRA (Aminotran_1_2 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZ52_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.930e-15
Identity = 36/80 (45.00%), Postives = 57/80 (71.25%), Query Frame = 1 
Query:   25 LSSREIDEIIEDWKPEPLVPPLTEEETSEAESMPVVREFSGPYLRVEGVEKPLLNMANFDFLGMGQREELKQAAVQALDK 264
            L+++EID+++ +W PEPLVP  +  + S    M +V      +++++G++KPLLN+A FDFLG+G R ELK+ AV+AL K
Sbjct:   80 LTAQEIDDLVAEWTPEPLVPAGSGADASRTRPMGIVESQPDTHIKLQGIDKPLLNLATFDFLGLGSRPELKETAVKALTK 159
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BLAST of mRNA_E-fasciculatus_F_contig16349.4302.1 vs. uniprot
Match: A0A484E098_BRELC (Aminotran_1_2 domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E098_BRELC)

HSP 1 Score: 78.6 bits (192), Expect = 4.930e-15
Identity = 37/84 (44.05%), Postives = 55/84 (65.48%), Query Frame = 1 
Query:   13 SKPNLSSREIDEIIEDWKPEPLVPPLTEEETSEAESMPVVREFSGPYLRVEGVEKPLLNMANFDFLGMGQREELKQAAVQALDK 264
            S    S REIDE+ E+W PEP++P        +++ + +V    G +++++G  KPL+N+A FDFLGMG R ELK+ AV+AL K
Sbjct:   74 SAAKFSEREIDELCEEWAPEPIIPSYAIVGADDSKPIGIVEGTPGTHIKLQGFAKPLVNLATFDFLGMGSRPELKEVAVKALTK 157
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BLAST of mRNA_E-fasciculatus_F_contig16349.4302.1 vs. uniprot
Match: A0A662XVR4_9STRA (Aminotran_1_2 domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XVR4_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 5.550e-15
Identity = 32/80 (40.00%), Postives = 57/80 (71.25%), Query Frame = 1 
Query:   25 LSSREIDEIIEDWKPEPLVPPLTEEETSEAESMPVVREFSGPYLRVEGVEKPLLNMANFDFLGMGQREELKQAAVQALDK 264
            L+ REID++ ++W PEP++PP T  + +++  + +V      +L+++G+ +P+LN+A FDFLG+G R ELK+ A++ L K
Sbjct:   66 LTEREIDDLCDEWTPEPIIPPNTVVDVNKSTPIGIVEGTPDTHLKLQGLAQPVLNLATFDFLGLGSRPELKEVAIKTLTK 145
[Close]
BLAST of mRNA_E-fasciculatus_F_contig16349.4302.1 vs. uniprot
Match: M4BTE5_HYAAE (Aminotran_1_2 domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BTE5_HYAAE)

HSP 1 Score: 78.2 bits (191), Expect = 6.730e-15
Identity = 35/80 (43.75%), Postives = 56/80 (70.00%), Query Frame = 1 
Query:   25 LSSREIDEIIEDWKPEPLVPPLTEEETSEAESMPVVREFSGPYLRVEGVEKPLLNMANFDFLGMGQREELKQAAVQALDK 264
            LS RE+DE+ E+W PEP++PP +    ++++   VV      +++++G +KPLLN+A FDFLG+G R ELK+ A++ L K
Sbjct:   78 LSEREVDELCEEWVPEPMIPPNSVIGVNKSKPFGVVEATPDTHIKLQGFDKPLLNLATFDFLGLGSRPELKEVAIKTLTK 157
[Close]
BLAST of mRNA_E-fasciculatus_F_contig16349.4302.1 vs. uniprot
Match: A0A662X4K7_9STRA (Aminotran_1_2 domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X4K7_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 2.390e-14
Identity = 32/80 (40.00%), Postives = 56/80 (70.00%), Query Frame = 1 
Query:   25 LSSREIDEIIEDWKPEPLVPPLTEEETSEAESMPVVREFSGPYLRVEGVEKPLLNMANFDFLGMGQREELKQAAVQALDK 264
            L+ REID++ ++W PEP++PP    + +++  + +V    G +L+++G+ +P LN+A FDFLG+G R ELK+ A++ L K
Sbjct:  161 LTEREIDDLCDEWTPEPIIPPNAVVDVNKSTPIGIVEGTPGTHLKLQGLAQPALNLATFDFLGLGSRPELKEVAIKTLTK 240
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16349.4302.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHG3_ECTSI1.050e-4895.40Serine palmitoyltransferase n=1 Tax=Ectocarpus sil... [more]
A0A6H5KV36_9PHAE4.410e-4795.40Aminotran_1_2 domain-containing protein n=1 Tax=Ec... [more]
K3X182_GLOUD1.590e-1647.50Aminotran_1_2 domain-containing protein n=1 Tax=Gl... [more]
H3GT37_PHYRM5.550e-1645.00Aminotran_1_2 domain-containing protein n=21 Tax=P... [more]
A0A3R7FXY7_9STRA1.040e-1543.75Aminotran_1_2 domain-containing protein n=3 Tax=Ph... [more]
A0A5D6XZ52_9STRA1.930e-1545.00Aminotran_1_2 domain-containing protein n=1 Tax=Py... [more]
A0A484E098_BRELC4.930e-1544.05Aminotran_1_2 domain-containing protein n=1 Tax=Br... [more]
A0A662XVR4_9STRA5.550e-1540.00Aminotran_1_2 domain-containing protein (Fragment)... [more]
M4BTE5_HYAAE6.730e-1543.75Aminotran_1_2 domain-containing protein n=1 Tax=Hy... [more]
A0A662X4K7_9STRA2.390e-1440.00Aminotran_1_2 domain-containing protein (Fragment)... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16349contigE-fasciculatus_F_contig16349:2059..2698 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.6
Seed ortholog evalue5.3e-14
Seed eggNOG ortholog36331.EPrPI00000022464
KEGG rclassRC00004,RC02725,RC02849
KEGG koko:K00654
KEGG ReactionR01281
KEGG Pathwayko00600,ko01100,ko04071,ko04138,map00600,map01100,map04071,map04138
KEGG ModuleM00094,M00099
GOsGO:0002178,GO:0003674,GO:0003824,GO:0004758,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006629,GO:0006643,GO:0006665,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0012505,GO:0016020,GO:0016408,GO:0016409,GO:0016454,GO:0016740,GO:0016746,GO:0016747,GO:0017059,GO:0030148,GO:0031211,GO:0031984,GO:0032991,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046467,GO:0071704,GO:0098796,GO:0098827,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1905961,GO:1990234
EggNOG free text desc.Serine palmitoyltransferase. Source PGD
EggNOG OGs1MB90@121069,COG0156@1,KOG1358@2759
EC2.3.1.50
COG Functional cat.O
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007
Hectar predicted targeting categoryother localisation
Exons2
Model size273
Cds size273
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928104.4630036-CDS-E-fasciculatus_F_contig16349:2058..21841622928104.4630036-CDS-E-fasciculatus_F_contig16349:2058..2184Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16349 2059..2184 +
1695995821.3323705-CDS-E-fasciculatus_F_contig16349:2058..21841695995821.3323705-CDS-E-fasciculatus_F_contig16349:2058..2184Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16349 2059..2184 +
1622928104.5090005-CDS-E-fasciculatus_F_contig16349:2551..26981622928104.5090005-CDS-E-fasciculatus_F_contig16349:2551..2698Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16349 2552..2698 +
1695995821.3495448-CDS-E-fasciculatus_F_contig16349:2551..26981695995821.3495448-CDS-E-fasciculatus_F_contig16349:2551..2698Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16349 2552..2698 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16349.4302.1prot_E-fasciculatus_F_contig16349.4302.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16349 2059..2698 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16349.4302.1

>prot_E-fasciculatus_F_contig16349.4302.1 ID=prot_E-fasciculatus_F_contig16349.4302.1|Name=mRNA_E-fasciculatus_F_contig16349.4302.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=91bp
MQDLSKPNLSSREIDEIIEDWKPEPLVPPLTEEETSEAESMPVVREFSGP
YLRVEGVEKPLLNMANFDFLGMGQREELKQAAVQALDKVW*
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mRNA from alignment at E-fasciculatus_F_contig16349:2059..2698+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16349.4302.1 ID=mRNA_E-fasciculatus_F_contig16349.4302.1|Name=mRNA_E-fasciculatus_F_contig16349.4302.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=640bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16349:2059..2698+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCAGGACCTGTCAAAGCCTAACTTGTCTAGCCGAGAGATCGACGAGAT
CATCGAGGACTGGAAGCCGGAGCCGCTGGTGCCGCCGCTAACGGAGGAGG
AGACCTCCGAAGCAGAGAGCATGCCGGTGAGTCAGTCAGCGGCGAAACCT
CCTCAAAAAGGAAAAGAGCTTCGCGGGGGAGGCGAAGAGACCGTACGAGA
GTGCCTTGTAATGGTAGTTTTTGTGTAGCCGTTAGCCACTCACACGCTCC
GCTCTCCGTGCAGCGGCAGCGTTTGTTGTGCCATATGCCCCGCCCAAAAC
CAAAACCCCTAACAAACAAACAAAAAAATCTCGAACTTTCATTGTATGTA
TGCGTATAATTCCCTAAAATAACAGCAGATCAATTGCAACACCCCCCCAT
ACACTTACTTTGCAGTGCTGTGCCATTCAAATTCATTGCGGCAAAAAAAA
AAAAAACGCGGCGCGATTTTTTCCCCGCGCACACGCTTGGCAGGTCGTGC
GGGAGTTCAGCGGCCCCTACCTGCGTGTGGAAGGCGTCGAGAAGCCGCTT
CTAAACATGGCCAACTTCGACTTCCTGGGGATGGGGCAGAGGGAGGAGCT
CAAGCAGGCGGCGGTGCAAGCGTTGGACAAGGTATGGTAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16349:2059..2698+

>mRNA_E-fasciculatus_F_contig16349.4302.1 ID=mRNA_E-fasciculatus_F_contig16349.4302.1|Name=mRNA_E-fasciculatus_F_contig16349.4302.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=546bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16349:2059..2698+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCAGGACCTGTCAAAGCCTAACTTGTCTAGCCGAGAGATCGACGAGAT
CATCGAGGACTGGAAGCCGGAGCCGCTGGTGCCGCCGCTAACGGAGGAGG
AGACCTCCGAAGCAGAGAGCATGCCGATGCAGGACCTGTCAAAGCCTAAC
TTGTCTAGCCGAGAGATCGACGAGATCATCGAGGACTGGAAGCCGGAGCC
GCTGGTGCCGCCGCTAACGGAGGAGGAGACCTCCGAAGCAGAGAGCATGC
CGGTCGTGCGGGAGTTCAGCGGCCCCTACCTGCGTGTGGAAGGCGTCGAG
AAGCCGCTTCTAAACATGGCCAACTTCGACTTCCTGGGGATGGGGCAGAG
GGAGGAGCTCAAGCAGGCGGCGGTGCAAGCGTTGGACAAGGTATGGTAAG
TCGTGCGGGAGTTCAGCGGCCCCTACCTGCGTGTGGAAGGCGTCGAGAAG
CCGCTTCTAAACATGGCCAACTTCGACTTCCTGGGGATGGGGCAGAGGGA
GGAGCTCAAGCAGGCGGCGGTGCAAGCGTTGGACAAGGTATGGTAA
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