mRNA_E-fasciculatus_F_contig16342.4301.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16342.4301.1
Unique NamemRNA_E-fasciculatus_F_contig16342.4301.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16342.4301.1 vs. uniprot
Match: A0A6H5K9B1_9PHAE (Peptidase S59 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K9B1_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 1.030e-8
Identity = 33/35 (94.29%), Postives = 35/35 (100.00%), Query Frame = 2 
Query:  287 TSTPFGSNTAQQQTPAFGAASTTFGASTTGAFGAK 391
            T+TPFGSNTAQQQTPAFGAASTTFG+STTGAFGAK
Sbjct:   16 TATPFGSNTAQQQTPAFGAASTTFGSSTTGAFGAK 50
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16342.4301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K9B1_9PHAE1.030e-894.29Peptidase S59 domain-containing protein n=2 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16342contigE-fasciculatus_F_contig16342:487..2754 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size394
Cds size393
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928104.3897953-CDS-E-fasciculatus_F_contig16342:487..5901622928104.3897953-CDS-E-fasciculatus_F_contig16342:487..590Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16342 488..590 -
1695995821.3114069-CDS-E-fasciculatus_F_contig16342:487..5901695995821.3114069-CDS-E-fasciculatus_F_contig16342:487..590Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16342 488..590 -
1622928104.4058921-CDS-E-fasciculatus_F_contig16342:2464..27541622928104.4058921-CDS-E-fasciculatus_F_contig16342:2464..2754Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16342 2465..2754 -
1695995821.3215322-CDS-E-fasciculatus_F_contig16342:2464..27541695995821.3215322-CDS-E-fasciculatus_F_contig16342:2464..2754Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16342 2465..2754 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16342.4301.1prot_E-fasciculatus_F_contig16342.4301.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16342 488..2754 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16342.4301.1

>prot_E-fasciculatus_F_contig16342.4301.1 ID=prot_E-fasciculatus_F_contig16342.4301.1|Name=mRNA_E-fasciculatus_F_contig16342.4301.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=131bp
PILRVPPRVRESHARARNNVRRCPKEQGRVSGKEAEVDKRAQLDITQRER
ERRGIEAIGRRLEVDGEEDNLGVCLRHNVWCRGRRGLRHLWCGLRDIDPL
RQQHGSAADPSLRGSVDDIRRQHNGRFRRQA
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mRNA from alignment at E-fasciculatus_F_contig16342:487..2754-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16342.4301.1 ID=mRNA_E-fasciculatus_F_contig16342.4301.1|Name=mRNA_E-fasciculatus_F_contig16342.4301.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2268bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16342:487..2754- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCTATCTTGCGTGTGCCCCCTCGCGTGAGGGAATCCCACGCACGGGCGCG
CAACAACGTTCGCCGTTGCCCCAAGGAGCAAGGGCGCGTTAGTGGCAAGG
AAGCGGAGGTTGATAAGAGAGCCCAGCTAGATATCACCCAGAGAGAGAGA
GAGAGGCGGGGTATTGAAGCTATAGGAAGAAGACTCGAGGTAGACGGGGA
AGAAGACAACCTAGGCGTTTGCCTCCGGCACAATGTTTGGTGCAGGGGGA
GGAGGGGGCTTCGGCACCTCTGGTGCGGGCTTCGGGACATGTGAGTTTGG
CGGGTGTGACCTGCTGCTGCCGATCAGGCTTGTTTTCTTGTCGAGAGGAC
CAGAGGTGGTCGTTCCGTTTGCAACGCTGCGACCGACTCTGCTTATATAA
CGGTCCATATCTCTTTGCACAGGGTTGCGAATCATCGTACAGGGAAAGTC
CGATCAACCACACACAACCGCCGTACGGTGGGGCGAAGAAGGGATGAAGT
TCACACGCGTAGGACGCTGGCTGCATGCCATGCCATGTGCGCCTTTGCTG
CCCTGTCGGTGCTGTGCACCGCTTTGCCCCTCTCACCCTGCCAAACATGT
TGCTCTCCACGTTAACTACTTACATACTACGAGAGTTGTAGTGAGTGAAA
ACGAACAACCCAAGATTGGTTGTCTGACAGATGATGGGACATCGCGGTGT
ACCAGCTACACATCTCTTTCAAAGCGTTTTCGACACGTAAATAGGCGCGC
CATGCTTGCAACCGCCACGACGGATATCCCGAATCGCATGTTCTGCTGTT
TGCGCCACCAGTTTTTTTATTTTCTATGTCCTCCTTGTGCACGGGGTGTG
GCGAACGAAACAACTCTTTTCTGCACATATATTCCGCTGCGATTTGTCGT
TTTTTTTCAAATTTTGCGGCACGTTCCGAGCGCCGTCGCGCGCACGGGGT
ATCTTGACACATGCCTCTACACCTCTACACGCGCACACATCTGCACATGT
CATCACGGTTCGCAGCATGGAACCAGGCAAATAAACCATGTCCTGATTTG
TGTTCGTTGGTTTGCGGAGCACGACAGCAGTAGCGATCTCTTTCAACTCC
GATTTGTCCTGAATTTGGAAGAATATTATATAGTGTTTCCGTGACCACGG
GAACCAGGGTTAAGTGGACTTATCCGGACAGGACGAAGGTACTGGGTAGA
GAGAATCGGTACGGCTTTTAACGTGAAGACAACAACAACAACAACAACAA
CAGATTGCTTGCACGCGCGCCCCGGCTGTTATTCGGTACTGTAGGTAACC
TTCGTGTTTCGCCAAACCATGTTTGTCGCCTGTGCCTCGTCTTGGGAACC
CCTACAAAGGGGTGTATTCACGGCCTCTGGTTTGCACCGGTGACGTCACT
TCTCCACACACACGGCCTAACCCTAACTCAACACACGGCCTAACCCTAAC
TCAACCTCCCCAATTGCATGCTTTATCTGACATGTTCACTCGATAGAAAA
AGCCTGGGAAGGCTATATACTGCGCTGTACATGCGCGTCTCTCCAGCTGG
CATGGGTGGGTTGTCGGTTCAACGACTTTGCACACAGACGCGGCTACGTC
CAGCATCCAGCAAGGGTCACCCAACCCTCGCTAAACAGACTCCCATCACA
TCCACTCTGAGAATGCTCCGTCCAAACGGGCAATCTTGCTCTTGCGTTAA
GAGTTTTTCTCTACAAACGAAACACGTTGTGAACACGTTTTTTGCGAATA
TTGTGGTCCCCACCTTTGCGCTACTGATCCGGGCGGGGGCGCCGGCAGAT
GAACAAGAGGCCCCGATACCGACGACTCGACTGCTCAGATGAGACACCAC
CAAACGACGAGGAGATACTCGTACAAGAAAAATAGAAAATAGTGTACAAC
TGGAGTGGAATAGGAGCTCCGTCTTGCGGTTTTGAGTACCGCGTTTCAAT
CGCGCCCCCCTGTCTGGCACCACATATTGATCTCTAGACTATACCGTAGC
AGTTTGATGCCTACGTTCCTACGTGTTGATTCCTGTATGTACCACGCATT
GATCCTGACATGACATCCCCTCAACAATTGACCCCCTTTCCACGCGTGCC
CATTACTCTCCGCTACAACCGCTCTCTGTTCCTCGGTGGGGTGGCTGCCC
TCTCTCCGCTTCAGCGACCCCCTTCGGCAGCAACACGGCTCAGCAGCAGA
CCCCAGCCTTCGGGGCAGCGTCGACGACATTCGGCGCCAGCACAACGGGC
GCTTTCGGCGCCAAGCCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16342:487..2754-

>mRNA_E-fasciculatus_F_contig16342.4301.1 ID=mRNA_E-fasciculatus_F_contig16342.4301.1|Name=mRNA_E-fasciculatus_F_contig16342.4301.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=786bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16342:487..2754- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCTATCTTGCGTGTGCCCCCTCGCGTGAGGGAATCCCACGCACGGGCGCG
CAACAACGTTCGCCGTTGCCCCAAGGAGCAAGGGCGCGTTAGTGGCAAGG
AAGCGGAGGTTGATAAGAGAGCCCAGCTAGATATCACCCAGAGAGAGAGA
GAGAGGCGGGGTATTGAAGCTATAGGAAGAAGACTCGAGGTAGACGGGGA
AGAAGACAACCTAGGCGTTTGCCTCCGGCACAATGTTTGGTGCAGGGGGA
GGAGGGGGCTTCGGCACCTCTGGTGCGGGCTTCGGGACATCCTATCTTGC
GTGTGCCCCCTCGCGTGAGGGAATCCCACGCACGGGCGCGCAACAACGTT
CGCCGTTGCCCCAAGGAGCAAGGGCGCGTTAGTGGCAAGGAAGCGGAGGT
TGATAAGAGAGCCCAGCTAGATATCACCCAGAGAGAGAGAGAGAGGCGGG
GTATTGAAGCTATAGGAAGAAGACTCGAGGTAGACGGGGAAGAAGACAAC
CTAGGCGTTTGCCTCCGGCACAATGTTTGGTGCAGGGGGAGGAGGGGGCT
TCGGCACCTCTGGTGCGGGCTTCGGGACATCGACCCCCTTCGGCAGCAAC
ACGGCTCAGCAGCAGACCCCAGCCTTCGGGGCAGCGTCGACGACATTCGG
CGCCAGCACAACGGGCGCTTTCGGCGCCAAGCCCGACCCCCTTCGGCAGC
AACACGGCTCAGCAGCAGACCCCAGCCTTCGGGGCAGCGTCGACGACATT
CGGCGCCAGCACAACGGGCGCTTTCGGCGCCAAGCC
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