mRNA_E-fasciculatus_F_contig16337.4299.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16337.4299.1
Unique NamemRNA_E-fasciculatus_F_contig16337.4299.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16337.4299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16337contigE-fasciculatus_F_contig16337:1991..2477 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size488
Cds size306
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928104.1290336-CDS-E-fasciculatus_F_contig16337:1990..22961622928104.1290336-CDS-E-fasciculatus_F_contig16337:1990..2296Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16337 1991..2296 +
1695995821.1691988-CDS-E-fasciculatus_F_contig16337:1990..22961695995821.1691988-CDS-E-fasciculatus_F_contig16337:1990..2296Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16337 1991..2296 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928104.142349-UTR-E-fasciculatus_F_contig16337:2296..24771622928104.142349-UTR-E-fasciculatus_F_contig16337:2296..2477Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16337 2297..2477 +
1695995821.1825304-UTR-E-fasciculatus_F_contig16337:2296..24771695995821.1825304-UTR-E-fasciculatus_F_contig16337:2296..2477Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16337 2297..2477 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16337.4299.1prot_E-fasciculatus_F_contig16337.4299.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16337 1991..2296 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16337.4299.1

>prot_E-fasciculatus_F_contig16337.4299.1 ID=prot_E-fasciculatus_F_contig16337.4299.1|Name=mRNA_E-fasciculatus_F_contig16337.4299.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=102bp
VLFFSTQTTRGRGIPFRAGNRDAIACEGSEHLAAVARGRDVFPLLTHRPS
ITRTDSGRRRYPSVGARRRLPTVVPERAYVRSSSRTTREGGAPSRDQWFA
R*
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mRNA from alignment at E-fasciculatus_F_contig16337:1991..2477+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16337.4299.1 ID=mRNA_E-fasciculatus_F_contig16337.4299.1|Name=mRNA_E-fasciculatus_F_contig16337.4299.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=487bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16337:1991..2477+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTATTATTCTTCTCGACTCAAACCACTCGCGGGAGGGGGATACCCTTCCG
CGCAGGAAACCGCGACGCGATAGCATGCGAAGGCTCAGAGCACCTCGCAG
CGGTCGCACGCGGCCGGGATGTGTTCCCTTTGCTTACCCACAGGCCCTCA
ATAACACGTACAGACAGCGGTCGCAGGCGTTACCCCTCTGTGGGGGCGCG
CCGTAGACTGCCGACTGTCGTGCCAGAGAGAGCCTATGTGCGGTCCTCTT
CGCGCACCACCCGCGAGGGCGGAGCACCAAGTAGGGACCAGTGGTTCGCG
CGTTGATAGCTGTGTCGAGGACCGACAAGCGACGCAAACCTCACCGAAAC
ACCAGCGGGACAGGTAGAGCCGGAGCTCTCTTGACCCTTCGTCACATCTT
CTGCGCCCTCGTTGCGAGATTGCCACACACTGCAGCTTCACTTGGGGCGC
ACGCGACCGTCGACCATAGATAACACATGTCAACGCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16337:1991..2477+

>mRNA_E-fasciculatus_F_contig16337.4299.1 ID=mRNA_E-fasciculatus_F_contig16337.4299.1|Name=mRNA_E-fasciculatus_F_contig16337.4299.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=612bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16337:1991..2477+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTATTATTCTTCTCGACTCAAACCACTCGCGGGAGGGGGATACCCTTCCG
CGCAGGAAACCGCGACGCGATAGCATGCGAAGGCTCAGAGCACCTCGCAG
CGGTCGCACGCGGCCGGGATGTGTTCCCTTTGCTTACCCACAGGCCCTCA
ATAACACGTACAGACAGCGGTCGCAGGCGTTACCCCTCTGTGGGGGCGCG
CCGTAGACTGCCGACTGTCGTGCCAGAGAGAGCCTATGTGCGGTCCTCTT
CGCGCACCACCCGCGAGGGCGGAGCACCAAGTAGGGACCAGTGGTTCGCG
CGTTGAGTATTATTCTTCTCGACTCAAACCACTCGCGGGAGGGGGATACC
CTTCCGCGCAGGAAACCGCGACGCGATAGCATGCGAAGGCTCAGAGCACC
TCGCAGCGGTCGCACGCGGCCGGGATGTGTTCCCTTTGCTTACCCACAGG
CCCTCAATAACACGTACAGACAGCGGTCGCAGGCGTTACCCCTCTGTGGG
GGCGCGCCGTAGACTGCCGACTGTCGTGCCAGAGAGAGCCTATGTGCGGT
CCTCTTCGCGCACCACCCGCGAGGGCGGAGCACCAAGTAGGGACCAGTGG
TTCGCGCGTTGA
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