mRNA_E-fasciculatus_F_contig16336.4298.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16336.4298.1
Unique NamemRNA_E-fasciculatus_F_contig16336.4298.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16336.4298.1 vs. uniprot
Match: D8LAZ3_ECTSI (L-type lectin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAZ3_ECTSI)

HSP 1 Score: 372 bits (956), Expect = 2.060e-126
Identity = 180/187 (96.26%), Postives = 185/187 (98.93%), Query Frame = 2 
Query:    2 PAGGQFSLAMSFRVSGDEEKTHGKYLAVILGNPDMIRRTGDTYGVPEDFIGLGVVISPRPPSDLSDISGAPIRAPGPRQFVSFIANNGTRTTEDVRMAANSCASTLRYYQGRDDFNFLKMSRIRLGFYDGEVSLEVDARNVGVWRKCITTKVTDMPEGWLDRAGVIVVGETSREVSNNHDVMSLEVW 562
            P GG+FSL MSFRVSGDEEKTHGKYLAVILGNPDMIRRTGDTYGVPEDFIG+GVVISPRPPSDLSDISGAPIRAPGPRQFVSFIANNGTRTTEDVRMAANSCASTLRYYQGRDDFNFLKMSRIRLG+YDGE+SLEVDARNVGVWRKCITTKVTDMPEGWLDRAGVIVVGETSREVSNNHDVMSLEV+
Sbjct:  113 PVGGEFSLTMSFRVSGDEEKTHGKYLAVILGNPDMIRRTGDTYGVPEDFIGVGVVISPRPPSDLSDISGAPIRAPGPRQFVSFIANNGTRTTEDVRMAANSCASTLRYYQGRDDFNFLKMSRIRLGYYDGEISLEVDARNVGVWRKCITTKVTDMPEGWLDRAGVIVVGETSREVSNNHDVMSLEVY 299
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BLAST of mRNA_E-fasciculatus_F_contig16336.4298.1 vs. uniprot
Match: A0A835YN92_9STRA (Concanavalin A-like lectin/glucanase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN92_9STRA)

HSP 1 Score: 115 bits (288), Expect = 6.060e-27
Identity = 65/185 (35.14%), Postives = 104/185 (56.22%), Query Frame = 2 
Query:   17 FSLAMSFRVSGDEEKTHGKYLAVILGNPDMIR-RTGDTYGVPEDFIGLGVVISPRPPSDLSDISGAPIRAPGPRQF--VSFIANNGTRTTEDVRMAANSCASTLRYYQGRDDFNFLKMSRIRLGFYDGEVSLEVDARNVGVWRKCITTKVTDMPEGWLDRAGVIVVGETSREVSNNHDVMSLEVW 562
            FSL   FR+SG +E   G++L + +   D  R R GD +G+   F G+G+V+  +             R  G  +   VS + ++G RT E ++     C + +RY++GRDDFN L+ +RIR+   +   +L++DARN G WR+C+T    D+P GW +RA   ++     E SNN+DV+SL ++
Sbjct:  137 FSLEWKFRISGLQETGAGEHLGLWI--TDQARPREGDVFGMDAAFTGIGIVVDTK-------------RNEGDNRHRDVSVVMSDGRRTREQIQSNLVGCNANVRYWEGRDDFNVLRATRIRVN--ENLFTLDIDARNTGRWRRCVTMNTVDLPRGWAERATAGLLAGNQAE-SNNNDVLSLRLY 303
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BLAST of mRNA_E-fasciculatus_F_contig16336.4298.1 vs. uniprot
Match: A0A835YWL8_9STRA (Legume-like lectin family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWL8_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 7.520e-21
Identity = 69/188 (36.70%), Postives = 98/188 (52.13%), Query Frame = 2 
Query:   17 FSLAMSFRVSGDEEKTHGKYLAVILGNPDMIRRTGDTYGVPEDFIGLGVVISPRPPSDLSDISGAPIRAPGPRQF-VSFIANNGTRTTEDVRMAANSCASTLRYYQGRDDFNFLKMSRIRLGFYDGEVSLEVDA--RNVGVWRKCITTKVTD--MPEG-WLDRAGVIVVGETSREVSNNHDVMSLEVW 562
            FS+   FR+SG + +T G +LA+ +         GD Y    DF G+ VV+   P    +D +GA         F VS + N+G+R   D       C + LR+++GRDDFN LK SR+R+ +      LEVD   RN G WR+C T  +    +P G W   A V +V  T+   S+NHDV+SL V+
Sbjct:   69 FSVIWKFRISGRQSETFGDFLALSITTAPRYAE-GDAYRQKADFTGVMVVVDTNP----NDKAGA-------NHFDVSIVYNDGSRA--DAVQNLEGCIAPLRFHEGRDDFNVLKASRLRIKYTAATRMLEVDMDPRNTGRWRRCATANLAKRGLPAGGWPRTAHVGLVAATTGS-SDNHDVLSLRVY 241
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BLAST of mRNA_E-fasciculatus_F_contig16336.4298.1 vs. uniprot
Match: A0A8K1FJE1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FJE1_PYTOL)

HSP 1 Score: 88.6 bits (218), Expect = 2.550e-17
Identity = 59/187 (31.55%), Postives = 102/187 (54.55%), Query Frame = 2 
Query:   14 QFSLAMSFRVSGDEEKTHGKYLAV-ILGNPDMIRRTGDTYGVPEDFIGLGVVISPRPPSDLSDISGAPIRAPGPRQFVSFIANNGTRTTEDVR-MAANSC-ASTLRYYQGRDDFN-FLKMSRIRLGFYDGEVSLEVDARNVGVWRKCITTKVTDMPEGWLDRAGVIVVGETSREVSNNHDVMSLEVW 562
            +FSL ++FR+SG  +   G  LA+ I  +P  +   GD +G   +F G G V       + S          G    V+F+ NNG+RT +D+  M    C A  +RY++G   F+  L MSR ++ F +  V++ +DA+N G W +C  T++  +PE W++ + + +   T   +++NHDV+S++V+
Sbjct:   83 EFSLVLTFRISGQAQTWFGDGLALWITTSPSYV--AGDNHGFTGNFKGFGFVFDTFVNQEHS----------GGHMDVTFLENNGSRTLDDLYYMPKVGCMAPGIRYHEGNAAFSPSLNMSRAKVQFANHFVTISIDAKNTGEWEECYRTELL-IPEHWIEESTIGLTASTGG-LADNHDVISVQVF 255
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BLAST of mRNA_E-fasciculatus_F_contig16336.4298.1 vs. uniprot
Match: A0A485L059_9STRA (Aste57867_14249 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L059_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 3.730e-14
Identity = 52/189 (27.51%), Postives = 95/189 (50.26%), Query Frame = 2 
Query:   14 QFSLAMSFRVSGDEEKTHGKYLAV-ILGNPDMIRRTGDTYGVPEDFIGLGVVISPRPPSDLSDISGAPIRAPGPRQFVSFIANNGTRTTEDVRMAANS---C-ASTLRYYQGRDDFNFLK-MSRIRLGFYDGEVSLEVDARNVGVWRKCITTKVTDMPEGWLDRAGVIVVGETSREVSNNHDVMSLEVW 562
            +FS+ M+FR+SG  E+  G  LA+ +   P  +   GD +G  E + G GV++     S+            G  + V+F+ N+GT++ +D+  A      C A  +RY+     F+    MSR+++ F +  V++++D  N G W  C    +  +P  W + A + +   T   +++ HDV+ LE++
Sbjct:   85 EFSIVMTFRISGQGERWFGDGLALWVTTEPRHV--DGDNHGFKETYTGFGVIVDTFVNSEQK----------GGHKDVTFVVNDGTKSLDDINYAPEGKRGCDAKNMRYHAKSAAFSASSSMSRVKVSFSNNFVNVQIDPTNSGFWSPCYEDTL-QLPASWFNDATLGITASTG-SLADTHDVIGLELY 259
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16336.4298.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LAZ3_ECTSI2.060e-12696.26L-type lectin-like domain-containing protein n=2 T... [more]
A0A835YN92_9STRA6.060e-2735.14Concanavalin A-like lectin/glucanase domain-contai... [more]
A0A835YWL8_9STRA7.520e-2136.70Legume-like lectin family-domain-containing protei... [more]
A0A8K1FJE1_PYTOL2.550e-1731.55Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A485L059_9STRA3.730e-1427.51Aste57867_14249 protein n=1 Tax=Aphanomyces stella... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16336contigE-fasciculatus_F_contig16336:181..2770 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size564
Cds size303
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16336.4298.1prot_E-fasciculatus_F_contig16336.4298.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16336 1051..2770 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928103.9626932-UTR-E-fasciculatus_F_contig16336:180..3361622928103.9626932-UTR-E-fasciculatus_F_contig16336:180..336Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16336 181..336 -
1695995821.1191397-UTR-E-fasciculatus_F_contig16336:180..3361695995821.1191397-UTR-E-fasciculatus_F_contig16336:180..336Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16336 181..336 -
1622928103.9743063-UTR-E-fasciculatus_F_contig16336:947..10501622928103.9743063-UTR-E-fasciculatus_F_contig16336:947..1050Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16336 948..1050 -
1695995821.1294947-UTR-E-fasciculatus_F_contig16336:947..10501695995821.1294947-UTR-E-fasciculatus_F_contig16336:947..1050Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16336 948..1050 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928103.9863162-CDS-E-fasciculatus_F_contig16336:1050..11161622928103.9863162-CDS-E-fasciculatus_F_contig16336:1050..1116Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16336 1051..1116 -
1695995821.138975-CDS-E-fasciculatus_F_contig16336:1050..11161695995821.138975-CDS-E-fasciculatus_F_contig16336:1050..1116Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16336 1051..1116 -
1622928103.998439-CDS-E-fasciculatus_F_contig16336:1895..20131622928103.998439-CDS-E-fasciculatus_F_contig16336:1895..2013Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16336 1896..2013 -
1695995821.1489377-CDS-E-fasciculatus_F_contig16336:1895..20131695995821.1489377-CDS-E-fasciculatus_F_contig16336:1895..2013Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16336 1896..2013 -
1622928104.0153594-CDS-E-fasciculatus_F_contig16336:2651..27701622928104.0153594-CDS-E-fasciculatus_F_contig16336:2651..2770Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16336 2652..2770 -
1695995821.1588855-CDS-E-fasciculatus_F_contig16336:2651..27701695995821.1588855-CDS-E-fasciculatus_F_contig16336:2651..2770Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16336 2652..2770 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16336.4298.1

>prot_E-fasciculatus_F_contig16336.4298.1 ID=prot_E-fasciculatus_F_contig16336.4298.1|Name=mRNA_E-fasciculatus_F_contig16336.4298.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=101bp
AGRRAVFSGYVVSGKRGRGKDPRQIPRRNSRQPGHDSENRRHVRCPRRLH
RPRRCDFAPPPLGFVRHLGCPNTGPGATTVRVIHRQQRDENHGGRAHGGQ
*
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mRNA from alignment at E-fasciculatus_F_contig16336:181..2770-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16336.4298.1 ID=mRNA_E-fasciculatus_F_contig16336.4298.1|Name=mRNA_E-fasciculatus_F_contig16336.4298.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2590bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16336:181..2770- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCGGCCGGAGGGCAGTTTTCTCTGGCTATGTCGTTTCGGGTAAGCGGGG
ACGAGGAAAAGACCCACGGCAAATACCTCGCCGTAATTCTCGGCAACCCG
GACATGATTCGGAGAACAGGTGGGTCGGGGCTCGGGTTATTGCCATATGT
CGAAGCCGAAACCAAACCATTCGGCTATCAACGCTGCCTAGTCTAGACAA
AATGATTTGATTTCGACTTCTATGGATACAGCGGCCGATGCTGACTGTTG
TTGGTATTGGTTGTTTTTGTTGCCACTGTTGTCTTGGTGTAGGTTCGTTT
AATGTTGCTTCCGCTGGTGCTGTTCCTTTTTGTCGCCGAAGGGTAGAACT
CGTGGAGCTCTGGCTCCACGGCGTACCTTGGTGTTGGTGGTGTTGACACT
TGACCTCTCGTGTAGTTGCTCGGGGAACGACAGGGAAGCTGACCAGGAAA
ACCTCCCTGATTGATGCATAGCTTTCGCGTACGCGGCAGAAGGCCATGCG
AGCGTGTCTTCATTTTCTGTCATGGTAACAATGCGAGCGCTTGTGCACAG
GTTTGGCAAGACGGAACCCTCCCCCAGCACACGCAAGGATGATGGCCAAG
TGCTGGTTCATCCTTATCCTTATGAAACGTAGGCCGCGCCGGCGAAAACC
CGGCATATCGCTCCGTCCCGGCACTGCTACCGACTATTGTACCGCATGCG
TTTACGCGAGTTCCCCCNNNNNNNNNNGCGCGCGATCTCGTAATTTTCCC
TCGGCAGGCGACACGTACGGTGTCCCCGAAGACTTCATCGGCCTCGGCGT
TGTGATTTCGCCCCGCCCCCCCTCGGATTTGTCCGACATCTCGGGTGCCC
CAATACGGGCCCCGGGGCCACGACAGTGAGTGCAAGAAAGAAACGTGTTG
TTGTTGTCGCCGTTGTGGTTGCGAAGGGTTTCATTTGATGGCGTAGAAGG
CAAGGTGTGCGGTGAAGCAGAGTAGTATATAGCTTGCCGATCTCTCTTGC
TTGTCTCGATCTCTCTCTCTCTCTCCCTCTTGACAGTTATTGTCGCTAAG
AACCCTTGTGCGTGTACGATGATGCTTGTGTTTCTCCTGGAGCGCTCCCA
AGCTGTTGCTACTGCTGTGATTGCGTCATCTGTCGTTTGAACGCCGTGTT
GACCTCTACATTCCTAACATGCCTCCACACAATCTTATACCGATCTGACG
GCTCACCGTATGCGAATAGACCGTTGTACACCGCATGTCACACGAAGCAT
CCTTCCTTGACCGCCGATACAGACCGAGAAACAGAAGCTTGACAAACTTA
GCGGGTTACTGGCTCTCTTCGCCTCGTTCGCTGGGCTTCACCCCGAGAGA
GGCAACGGCTTCCCGTATCGCTCCTACCTGCACAATACATCTGCACAGCA
TCGGAGGAGTGGTACTTCCCCACTGCCGCCGACGCATCCCCCCTCTCTTT
TATTTCGAAAGACAGTGAAAACAACAACAACAACAACAACAACAACAACA
ATAACAACAACAACAACAACAACAACAACAACAGACACAAAAGCAGCAAC
AGCGGCACCAGCAGCACCACCACCAGCGGCAGCACCACCACCACGACGCC
TTAACAACCACATTTCTTATCTTATCTGCCACCTGTGTCTTGTCTCGGAA
AAAGGTTCGTGTCATTCATCGCCAACAACGGGACGAGAACCACGGAGGAC
GTGCGCATGGCGGCCAATAGCTGCGCCTCGACTCTCCGCTACTACCAGGG
CAGGGACGACTTCAACTTCCTCAAGATGTCCCGCATTCGACTGGGCTTTT
ACGATGGGGAGGTCAGCCTCGAGGTACGTCAGGCGTTTGTTCTGTACTGT
ACAAGGGGGGTCAAGCCTCTGTTGTCGCTTGCCTTAGCCGGCGGCTTTGC
GTCGTGGAACAAGATATGGACGAATTTTCCTGGTTAGCGCGGCCGATGCG
AGTTTGTGAGGACCATTTTGTGGACAAGTCGGTCGCCCCGGTGGCCCAGG
AGGCAGCTTCGTTATCTTATTCTGGGTTTGAATATATCATCTCTCTCTCC
AGAATGAACAATTACAAATTGCAATGCCTGGGGTGGCAAGTGACTAGATT
CTTGAACATACGCTGAACCCTTCTCGTTTTTGAAATTGAAGGCAGGCGCC
GCCAGGGCAAGGCGAGACACAAACACATACCACAACAAATTCCCTGCGTA
ACCGTGATCTTGTTTTCCCCCGGATGATGCGTCAACGAACGGTATGGGTT
GGCACCAGAATAGATGGGACGAAGAAACCACCAACAGCACTCACATTCTC
GGGTCCCAGATCGTGGCCATTATTTGAAGCGTTTGTGGTTCAGCCGCGCT
GAGACTGCCGCATTTCATCGGTTAGCGCGGCCGGCCGGTGCTAACAATGA
GACACACGCATACCGCATACCGCATACCGCACAGGTGGACGCGCGTAACG
TGGGAGTGTGGAGGAAGTGCATCACGACGAAGGTGACGGACATGCCGGAG
GGATGGCTGGACAGGGCGGGGGTTATCGTGGTCGGGGAGACGAGCAGGGA
GGTGTCCAACAACCACGACGTCATGAGCCTCGAGGTATGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16336:181..2770-

>mRNA_E-fasciculatus_F_contig16336.4298.1 ID=mRNA_E-fasciculatus_F_contig16336.4298.1|Name=mRNA_E-fasciculatus_F_contig16336.4298.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=606bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16336:181..2770- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCGGCCGGAGGGCAGTTTTCTCTGGCTATGTCGTTTCGGGTAAGCGGGG
ACGAGGAAAAGACCCACGGCAAATACCTCGCCGTAATTCTCGGCAACCCG
GACATGATTCGGAGAACAGGCCGGCCGGAGGGCAGTTTTCTCTGGCTATG
TCGTTTCGGGTAAGCGGGGACGAGGAAAAGACCCACGGCAAATACCTCGC
CGTAATTCTCGGCAACCCGGACATGATTCGGAGAACAGGCGACACGTACG
GTGTCCCCGAAGACTTCATCGGCCTCGGCGTTGTGATTTCGCCCCGCCCC
CCCTCGGATTTGTCCGACATCTCGGGTGCCCCAATACGGGCCCCGGGGCC
ACGACAGCGACACGTACGGTGTCCCCGAAGACTTCATCGGCCTCGGCGTT
GTGATTTCGCCCCGCCCCCCCTCGGATTTGTCCGACATCTCGGGTGCCCC
AATACGGGCCCCGGGGCCACGACAGTTCGTGTCATTCATCGCCAACAACG
GGACGAGAACCACGGAGGACGTGCGCATGGCGGCCAATAGGTTCGTGTCA
TTCATCGCCAACAACGGGACGAGAACCACGGAGGACGTGCGCATGGCGGC
CAATAG
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