mRNA_E-fasciculatus_F_contig16328.4297.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16328.4297.1
Unique NamemRNA_E-fasciculatus_F_contig16328.4297.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16328.4297.1 vs. uniprot
Match: A0A6H5JVW2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVW2_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 1.870e-24
Identity = 193/259 (74.52%), Postives = 199/259 (76.83%), Query Frame = -2 
Query: 1030 AATGVGGILSIDGGAGAGTTASAGGAVVITGGTGSKNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTSDGALIGXXXXXXXXXXXXXXXXXXXXXXXDGTTTATLASEFDLSSSGGIGLVTTGTAAITLDSAXXXXXXXXXXXXXXXXTLQGWNMATAAIDAAAGPQTAIINSIVGSYTRKWTGANPGYPSTDTVQ 1806
            AATGVGG+LSI+GGAGAGTTASAGGAVVITGGTGSK+TXXXXXXXXXXXXXXXXXXXXX          XXXXXXXXXXXXXXXXXXXXXXXX       XXXXXXXXXXXXXXXXXXXXXXXXX   DTSD +L+ XXXXXXXX               DGTTTATLASEFDLSSSGGI LV            XXXXXXXXXXXXX   TLQGW+MATA ID   G QTAIINSIVGSYTRKWT ANPGYPSTD VQ
Sbjct:  716 AATGVGGLLSINGGAGAGTTASAGGAVVITGGTGSKSTXXXXXXXXXXXXXXXXXXXXXQSAAAGTGGIXXXXXXXXXXXXXXXXXXXXXXXXTAGKVTTXXXXXXXXXXXXXXXXXXXXXXXXXAG-DTSDASLVXXXXXXXXXGNAGANPGTLTLESGDGTTTATLASEFDLSSSGGIDLVXXXXXXXXXXXXXXXXXXXXXXXXXAASTLQGWDMATATIDEPVGTQTAIINSIVGSYTRKWT-ANPGYPSTDIVQ 972
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16328.4297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JVW2_9PHAE1.870e-2474.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16328contigE-fasciculatus_F_contig16328:11..2402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size2394
Cds size1239
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928103.8881118-UTR-E-fasciculatus_F_contig16328:10..11631622928103.8881118-UTR-E-fasciculatus_F_contig16328:10..1163Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16328 11..1163 +
1695995821.0898368-UTR-E-fasciculatus_F_contig16328:10..11631695995821.0898368-UTR-E-fasciculatus_F_contig16328:10..1163Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16328 11..1163 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928103.9069757-CDS-E-fasciculatus_F_contig16328:1163..24021622928103.9069757-CDS-E-fasciculatus_F_contig16328:1163..2402Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16328 1164..2402 +
1695995821.1082425-CDS-E-fasciculatus_F_contig16328:1163..24021695995821.1082425-CDS-E-fasciculatus_F_contig16328:1163..2402Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16328 1164..2402 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16328.4297.1prot_E-fasciculatus_F_contig16328.4297.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16328 1164..2402 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16328.4297.1

>prot_E-fasciculatus_F_contig16328.4297.1 ID=prot_E-fasciculatus_F_contig16328.4297.1|Name=mRNA_E-fasciculatus_F_contig16328.4297.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=413bp
MFHPCKVEDSNDTNVVDVRDMLLAESSVIAAVPVVTRPIPPLLLRSNSDA
RVAVVVPSPLSSVRVPGFAPALLPVLMLIAPPMSAPSEVSPAVIDTAPPT
PLVPDPTVRLRAPPRPAVAVPDPMLIAPLFPFVDAPELKVKAPLIPPVPG
PTAPAAALWMATSPLDVSVPVPEVSVTCPPVFLEPVPPVITTAPPALAVV
PAPAPPSIDSIPPTPVAAVDSPAAIESDPPGSIVPDPTVRLTAPPLPWIA
VPLPMRIDPVLPRVVVPELNIIAPLSPLAPASGERIVIDPLDVVPVPLAI
ETSPPLLLEEVPATRLTAPPTPDAASPTVRLSGPPAPPVASPLPIMTAPV
SPTVVVPEVIIVTPLSPVVPAEADEMVTPPLPPLVPPPLSIETDPPVTPA
PANRESDPPVALV
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mRNA from alignment at E-fasciculatus_F_contig16328:11..2402+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16328.4297.1 ID=mRNA_E-fasciculatus_F_contig16328.4297.1|Name=mRNA_E-fasciculatus_F_contig16328.4297.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2392bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16328:11..2402+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCGCGTACTTTATGATGGACTAGACTACAGTAGATGGCGTATTTTGTTGC
CTCAGGCTGGCTGACGACGCCTTTTCGTTGCTCAAATCTGTTCCCGCGGT
CGACGCTATACACAACGCCGAGCTGTGTAGACACCAATAAACATACTCCC
AAAATAAATGGAACGACTCACAAACAACATGCACGCACACACTAAACACA
CACATTGTGCTGCATACTAGACTATACATAAAAAACACACATACATTCCA
TGACACACATCCACACCTAGTCCACGCTCACGACAACAACAACAGTAGAT
TTTTCTGAGTTGTTTCTCCCCGCCTGGGCAGCCCGGACTTGATGCTTCGG
GGCTACTACATCCATCCATCCGCATTTCACGTTTGATGTAGACTACGTAG
CCCCACAGCATCAGTATGCATGCATACATTCGACCACAAACAAACACATA
CACATAGACTATATATATATCTACGTCACATACACACCACATACATAGAT
GATTCCATCCGTTCGCGTAGTATACCTCCGCACACTCGCCCACTACTAAA
CAACATACATGCTCACACATGCCGACACACACCCGGCTCAAGGCCTATGC
ACAGCACACACACACAATATATGAACGCGGCGTACAAAAGATACGCATAC
GAACGTGACCTTCCGACCACCGCTCGCGACGCCATAACAAACTTTCATCA
CTATCATGCACCCATGCCTCGAGATAAAAAGGAAGCAACGACCGTAAAGT
CCCTGCAGCGCCAGCTGTGTGTGCACACACCTATTTTGGTTCACACCGTG
CGGCGGCGGTGATGGTAACGACTATTAGGCGGGCCATTCATGCTTTGAGT
ACCACAAACGCAACACCATACTCGCTGGTATCGTCACATTCATCAGCCAC
CCACACCTCTACGTCAACTTGCCCTGCAATAATCGTCGTTGACAGCACCG
ACATTTGTTCAGCTGTGCCACAGGCCTTGGTGATGATTGCCATAACAACG
TCACCGACCGCGATTTTGGAATTGGTCACTTGAACGGTGTCGGTCGAGGG
GTATCCGGGATTCGCGCCGGTCCACTTTCGGGTATAACTTCCCACTATAC
TATTGATGATCGCGGTCTGAGGACCAGCGGCTGCGTCTATTGCAGCTGTC
GCCATGTTCCATCCTTGCAAAGTAGAAGACTCCAACGACACAAACGTAGT
GGACGTAAGAGATATGCTGCTAGCAGAATCGAGCGTAATCGCCGCCGTGC
CCGTTGTTACCAGGCCAATACCCCCGCTGCTGCTGAGGTCGAACTCAGAC
GCTAGGGTGGCAGTGGTAGTGCCGTCCCCACTCTCAAGTGTGAGGGTGCC
CGGGTTCGCGCCGGCGTTGTTGCCAGTCTTGATGCTGATTGCCCCTCCAA
TGAGCGCGCCATCGGAGGTATCTCCTGCTGTGATTGACACCGCTCCGCCG
ACACCACTAGTCCCGGATCCGACCGTCAGGCTGAGAGCCCCACCCCGTCC
AGCAGTAGCAGTCCCAGATCCGATGCTAATCGCGCCGCTGTTTCCGTTCG
TGGACGCCCCTGAGCTGAAGGTCAAAGCGCCACTTATACCTCCTGTACCC
GGACCTACTGCACCCGCGGCAGCGCTTTGGATGGCGACGTCCCCGCTAGA
CGTTTCTGTGCCTGTTCCAGAGGTGAGTGTGACTTGCCCACCAGTGTTTT
TGGAACCGGTGCCACCCGTGATAACCACCGCACCACCGGCGCTGGCGGTG
GTCCCAGCACCTGCTCCTCCGTCGATAGATAGTATCCCTCCGACTCCTGT
GGCCGCGGTCGACTCTCCCGCTGCGATTGAAAGCGACCCACCGGGATCGA
TTGTGCCAGATCCAACGGTCAGGCTGACGGCCCCGCCCCTCCCTTGGATC
GCTGTACCGCTACCAATGAGGATCGACCCGGTATTGCCGAGAGTGGTGGT
GCCCGAGCTAAACATCATAGCGCCACTCTCACCATTGGCGCCGGCGTCTG
GCGAGCGGATCGTAATCGATCCGCTTGACGTAGTACCCGTTCCGCTGGCT
ATCGAAACATCACCGCCCTTATTGTTGGAGGAGGTTCCGGCCACGAGGTT
AACTGCCCCCCCGACTCCTGATGCGGCGTCACCAACGGTCAGACTCAGTG
GACCACCGGCTCCACCTGTCGCATCGCCGCTACCGATCATGACGGCACCA
GTATCACCCACTGTTGTTGTACCGGAGGTGATAATTGTAACACCACTGTC
GCCCGTAGTCCCGGCCGAGGCGGACGAAATGGTGACCCCCCCACTCCCAC
CACTTGTACCTCCTCCGCTTTCAATCGAAACTGACCCGCCTGTAACCCCA
GCACCGGCGAACAGGGAAAGTGACCCACCCGTAGCGCTTGTA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16328:11..2402+

>mRNA_E-fasciculatus_F_contig16328.4297.1 ID=mRNA_E-fasciculatus_F_contig16328.4297.1|Name=mRNA_E-fasciculatus_F_contig16328.4297.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2478bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16328:11..2402+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTCCATCCTTGCAAAGTAGAAGACTCCAACGACACAAACGTAGTGGA
CGTAAGAGATATGCTGCTAGCAGAATCGAGCGTAATCGCCGCCGTGCCCG
TTGTTACCAGGCCAATACCCCCGCTGCTGCTGAGGTCGAACTCAGACGCT
AGGGTGGCAGTGGTAGTGCCGTCCCCACTCTCAAGTGTGAGGGTGCCCGG
GTTCGCGCCGGCGTTGTTGCCAGTCTTGATGCTGATTGCCCCTCCAATGA
GCGCGCCATCGGAGGTATCTCCTGCTGTGATTGACACCGCTCCGCCGACA
CCACTAGTCCCGGATCCGACCGTCAGGCTGAGAGCCCCACCCCGTCCAGC
AGTAGCAGTCCCAGATCCGATGCTAATCGCGCCGCTGTTTCCGTTCGTGG
ACGCCCCTGAGCTGAAGGTCAAAGCGCCACTTATACCTCCTGTACCCGGA
CCTACTGCACCCGCGGCAGCGCTTTGGATGGCGACGTCCCCGCTAGACGT
TTCTGTGCCTGTTCCAGAGGTGAGTGTGACTTGCCCACCAGTGTTTTTGG
AACCGGTGCCACCCGTGATAACCACCGCACCACCGGCGCTGGCGGTGGTC
CCAGCACCTGCTCCTCCGTCGATAGATAGTATCCCTCCGACTCCTGTGGC
CGCGGTCGACTCTCCCGCTGCGATTGAAAGCGACCCACCGGGATCGATTG
TGCCAGATCCAACGGTCAGGCTGACGGCCCCGCCCCTCCCTTGGATCGCT
GTACCGCTACCAATGAGGATCGACCCGGTATTGCCGAGAGTGGTGGTGCC
CGAGCTAAACATCATAGCGCCACTCTCACCATTGGCGCCGGCGTCTGGCG
AGCGGATCGTAATCGATCCGCTTGACGTAGTACCCGTTCCGCTGGCTATC
GAAACATCACCGCCCTTATTGTTGGAGGAGGTTCCGGCCACGAGGTTAAC
TGCCCCCCCGACTCCTGATGCGGCGTCACCAACGGTCAGACTCAGTGGAC
CACCGGCTCCACCTGTCGCATCGCCGCTACCGATCATGACGGCACCAGTA
TCACCCACTGTTGTTGTACCGGAGGTGATAATTGTAACACCACTGTCGCC
CGTAGTCCCGGCCGAGGCGGACGAAATGGTGACCCCCCCACTCCCACCAC
TTGTACCTCCTCCGCTTTCAATCGAAACTGACCCGCCTGTAACCCCAGCA
CCGGCGAACAGGGAAAGTGACCCACCCGTAGCGCTTGTAATGTTCCATCC
TTGCAAAGTAGAAGACTCCAACGACACAAACGTAGTGGACGTAAGAGATA
TGCTGCTAGCAGAATCGAGCGTAATCGCCGCCGTGCCCGTTGTTACCAGG
CCAATACCCCCGCTGCTGCTGAGGTCGAACTCAGACGCTAGGGTGGCAGT
GGTAGTGCCGTCCCCACTCTCAAGTGTGAGGGTGCCCGGGTTCGCGCCGG
CGTTGTTGCCAGTCTTGATGCTGATTGCCCCTCCAATGAGCGCGCCATCG
GAGGTATCTCCTGCTGTGATTGACACCGCTCCGCCGACACCACTAGTCCC
GGATCCGACCGTCAGGCTGAGAGCCCCACCCCGTCCAGCAGTAGCAGTCC
CAGATCCGATGCTAATCGCGCCGCTGTTTCCGTTCGTGGACGCCCCTGAG
CTGAAGGTCAAAGCGCCACTTATACCTCCTGTACCCGGACCTACTGCACC
CGCGGCAGCGCTTTGGATGGCGACGTCCCCGCTAGACGTTTCTGTGCCTG
TTCCAGAGGTGAGTGTGACTTGCCCACCAGTGTTTTTGGAACCGGTGCCA
CCCGTGATAACCACCGCACCACCGGCGCTGGCGGTGGTCCCAGCACCTGC
TCCTCCGTCGATAGATAGTATCCCTCCGACTCCTGTGGCCGCGGTCGACT
CTCCCGCTGCGATTGAAAGCGACCCACCGGGATCGATTGTGCCAGATCCA
ACGGTCAGGCTGACGGCCCCGCCCCTCCCTTGGATCGCTGTACCGCTACC
AATGAGGATCGACCCGGTATTGCCGAGAGTGGTGGTGCCCGAGCTAAACA
TCATAGCGCCACTCTCACCATTGGCGCCGGCGTCTGGCGAGCGGATCGTA
ATCGATCCGCTTGACGTAGTACCCGTTCCGCTGGCTATCGAAACATCACC
GCCCTTATTGTTGGAGGAGGTTCCGGCCACGAGGTTAACTGCCCCCCCGA
CTCCTGATGCGGCGTCACCAACGGTCAGACTCAGTGGACCACCGGCTCCA
CCTGTCGCATCGCCGCTACCGATCATGACGGCACCAGTATCACCCACTGT
TGTTGTACCGGAGGTGATAATTGTAACACCACTGTCGCCCGTAGTCCCGG
CCGAGGCGGACGAAATGGTGACCCCCCCACTCCCACCACTTGTACCTCCT
CCGCTTTCAATCGAAACTGACCCGCCTGTAACCCCAGCACCGGCGAACAG
GGAAAGTGACCCACCCGTAGCGCTTGTA
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