mRNA_E-fasciculatus_F_contig16325.4296.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16325.4296.1
Unique NamemRNA_E-fasciculatus_F_contig16325.4296.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16325.4296.1 vs. uniprot
Match: D7G219_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G219_ECTSI)

HSP 1 Score: 381 bits (979), Expect = 3.350e-117
Identity = 221/268 (82.46%), Postives = 224/268 (83.58%), Query Frame = 1 
Query:  157 MIEQLSELERRSDPVAVELAGVWTSSYAVVERGMKAAAKEERQRKVEEXXXXXXEAKAQEAVAKKADLEEKKVERIYKKLEEKVLREQAREKERLSRALRRLFEAEVSKRRTFARQTLQTRADAEGIAAILRDDACEGLECRTEEQQAAEDRDHDILQAALASARGTAPRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARLGGQVVLEELGLSQQQVANLLQLWDFLYCFREPLSEAGFTPARPLSLKRLAQALDAVDDMCRG 960
            MIEQLSELERRSDPVA+ELAGVWTSSYAVVER MKAAAKEERQRKVEEX    X AKAQEAVAKKADLEEKKVERIYKKL  KVLREQAREKERLSRALRRLFEAEVSKRRTFARQTLQTRADAEG+AAILRDDACEGLECRTEEQQAAEDRDHDILQAALASARGT PRG                                ARLGGQVVLEELGLSQQQVANLLQLWDFLYCFREPLSEAGFTPARP SLKRLAQAL AVD +CRG
Sbjct:    1 MIEQLSELERRSDPVAIELAGVWTSSYAVVEREMKAAAKEERQRKVEEXRERKXXAKAQEAVAKKADLEEKKVERIYKKLXXKVLREQAREKERLSRALRRLFEAEVSKRRTFARQTLQTRADAEGMAAILRDDACEGLECRTEEQQAAEDRDHDILQAALASARGTVPRGSGSSTKGASSSALPKAEAGASSTSSGG-----ARLGGQVVLEELGLSQQQVANLLQLWDFLYCFREPLSEAGFTPARPPSLKRLAQALHAVDGVCRG 263
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BLAST of mRNA_E-fasciculatus_F_contig16325.4296.1 vs. uniprot
Match: A0A6H5KV10_9PHAE (Bromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV10_9PHAE)

HSP 1 Score: 320 bits (819), Expect = 1.510e-95
Identity = 186/235 (79.15%), Postives = 190/235 (80.85%), Query Frame = 1 
Query:  256 MKAAAKEERQRKVEEXXXXXXEAKAQEAVAKKADLEEKKVERIYKKLEEKVLREQAREKERLSRALRRLFEAEVSKRRTFARQTLQTRADAEGIAAILRDDACEGLECRTEEQQAAEDRDHDILQAALASARGTAPRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARLGGQVVLEELGLSQQQVANLLQLWDFLYCFREPLSEAGFTPARPLSLKRLAQALDAVDDMCRG 960
            MKAAAKEER RKVEE      EAKAQEAVAKKADLEEKKVERIYKKLEEKVLREQAREKERLSRALRRLFEAEVSKRRTFARQTLQTRADAEG+AAILRDDACEGLECRTEEQQAAEDRDHD LQAALA+ARGTAPRG                                ARLGGQVVLEEL LSQ+QVANLLQLWDFLYCFREPLSEAGFTP RP SLKRLAQAL AVD +CRG
Sbjct:    1 MKAAAKEERLRKVEEERERKREAKAQEAVAKKADLEEKKVERIYKKLEEKVLREQAREKERLSRALRRLFEAEVSKRRTFARQTLQTRADAEGMAAILRDDACEGLECRTEEQQAAEDRDHDTLQAALANARGTAPRGSGSSSQGASSSALHKAEAGASPTSGGG-----ARLGGQVVLEELDLSQEQVANLLQLWDFLYCFREPLSEAGFTPTRPPSLKRLAQALHAVDGVCRG 230
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BLAST of mRNA_E-fasciculatus_F_contig16325.4296.1 vs. uniprot
Match: D7G220_ECTSI (FYR N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G220_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 1.000e-19
Identity = 55/59 (93.22%), Postives = 55/59 (93.22%), Query Frame = 1 
Query:    1 KGYVFEAHRTEKTFKRITKVNERTKGPSNVTERSTAKLAATGFRRNVLDGRTMIEQLSE 177
            KGYVFEAHR EKTFKRITKVNERTKGPSNVTERSTAKLAATGFR  V DGRTMIEQLSE
Sbjct:  889 KGYVFEAHRAEKTFKRITKVNERTKGPSNVTERSTAKLAATGFRA-VPDGRTMIEQLSE 946
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16325.4296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G219_ECTSI3.350e-11782.46Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KV10_9PHAE1.510e-9579.15Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
D7G220_ECTSI1.000e-1993.22FYR N-terminal domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16325contigE-fasciculatus_F_contig16325:31..2742 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionBromodomain and FY-rich domain protein
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBromodomain
Ec32 orthologEc-20_002790.1
Exons5
Model size963
Cds size963
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16325.4296.1prot_E-fasciculatus_F_contig16325.4296.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16325 31..2742 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928103.7682042-CDS-E-fasciculatus_F_contig16325:30..1611622928103.7682042-CDS-E-fasciculatus_F_contig16325:30..161Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16325 31..161 +
1695995821.041341-CDS-E-fasciculatus_F_contig16325:30..1611695995821.041341-CDS-E-fasciculatus_F_contig16325:30..161Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16325 31..161 +
1622928103.7844093-CDS-E-fasciculatus_F_contig16325:399..5111622928103.7844093-CDS-E-fasciculatus_F_contig16325:399..511Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16325 400..511 +
1695995821.0553596-CDS-E-fasciculatus_F_contig16325:399..5111695995821.0553596-CDS-E-fasciculatus_F_contig16325:399..511Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16325 400..511 +
1622928103.8032553-CDS-E-fasciculatus_F_contig16325:1218..13801622928103.8032553-CDS-E-fasciculatus_F_contig16325:1218..1380Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16325 1219..1380 +
1695995821.0635083-CDS-E-fasciculatus_F_contig16325:1218..13801695995821.0635083-CDS-E-fasciculatus_F_contig16325:1218..1380Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16325 1219..1380 +
1622928103.8353782-CDS-E-fasciculatus_F_contig16325:1927..21131622928103.8353782-CDS-E-fasciculatus_F_contig16325:1927..2113Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16325 1928..2113 +
1695995821.0716956-CDS-E-fasciculatus_F_contig16325:1927..21131695995821.0716956-CDS-E-fasciculatus_F_contig16325:1927..2113Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16325 1928..2113 +
1622928103.853927-CDS-E-fasciculatus_F_contig16325:2370..27421622928103.853927-CDS-E-fasciculatus_F_contig16325:2370..2742Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16325 2371..2742 +
1695995821.0800126-CDS-E-fasciculatus_F_contig16325:2370..27421695995821.0800126-CDS-E-fasciculatus_F_contig16325:2370..2742Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16325 2371..2742 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16325.4296.1

>prot_E-fasciculatus_F_contig16325.4296.1 ID=prot_E-fasciculatus_F_contig16325.4296.1|Name=mRNA_E-fasciculatus_F_contig16325.4296.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=321bp
KGYVFEAHRTEKTFKRITKVNERTKGPSNVTERSTAKLAATGFRRNVLDG
RTMIEQLSELERRSDPVAVELAGVWTSSYAVVERGMKAAAKEERQRKVEE
ERERKREAKAQEAVAKKADLEEKKVERIYKKLEEKVLREQAREKERLSRA
LRRLFEAEVSKRRTFARQTLQTRADAEGIAAILRDDACEGLECRTEEQQA
AEDRDHDILQAALASARGTAPRGGGGGGSSGKRSSSSPALPKAEAGASSA
SGGGGARLGGQVVLEELGLSQQQVANLLQLWDFLYCFREPLSEAGFTPAR
PLSLKRLAQALDAVDDMCRG*
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mRNA from alignment at E-fasciculatus_F_contig16325:31..2742+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16325.4296.1 ID=mRNA_E-fasciculatus_F_contig16325.4296.1|Name=mRNA_E-fasciculatus_F_contig16325.4296.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2712bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16325:31..2742+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGGGCTACGTCTTCGAGGCCCACCGCACGGAGAAGACGTTCAAGAGGAT
CACCAAGGTCAACGAGCGCACTAAGGGGCCGAGCAACGTCACTGAGAGGT
CCACGGCAAAGCTCGCAGCCACCGGATTCAGGTAATTCAGCACAAAAAAT
ATGTGGACACGTACTAAGAGAGAGAGAGGCCTTAGCGGCACCGTTAGTAT
TGATGTGCGGGGCGAAGACACAGGCTATCTACCCTCGCCAGAGGAAGAGC
TGTTCATGCCTTATTTTAAGCATGGCGATACCAAACACGATCGGGATGGG
GAACTACGAAGAGAGAGTGGCACATAAACGCAGTCTTGTGTACATCCATA
TTTTTCCTCTTGTGATCAGGAGGAACGTACTAGACGGGAGGACGATGATC
GAACAGCTCTCGGAGCTGGAGAGGCGCTCGGACCCCGTGGCCGTCGAGCT
CGCCGGCGTGTGGACTTCCAGCTACGCGGTGGTGAGCGAGATTTTATTTG
TTTTTGTTTTCGTTTTCCCCCTGAGTTCCCGTCGCTACTTCGCATCCAGT
TGGCCTACACTTTGTTGCTTTGCTTCGGCCCGGTGCCAGCCTACCTTGGT
CGACAACAACAATGTCTACCACCATGCGTTTGTCGATCGATGATGCAAAT
CACGCGGTCGAATTTTTTGCTGTCTCGTCCGTGTTTGCTGTCGTTTTTTT
GAGTCATTTTTACCAATGACGGGGTCAATATTTTGCTGCGCGTTTCTTCG
ATGATTGATTCACATAACGGGGTCGATTTTGCTGTGGTTTTTCGATCATT
TTTACAAATGACGTGGCCGATTTTTGCTGTCGTTTTATTTTTTATCATTG
ATGCAAACATCGTGTTCGATTGTTGCTGTCGTTGTTTCCGATACTTGACA
CACAGAACGTGGTGGTCGATGTTTGTCTTTGTCTCCGATAATTGACGCAC
ATAATGTGGTGGTCGATTTTACTGCCGTTTTTTCGATCATTGACACATGA
CATTGCGGTCGATTTTTGCTGTGTCGATTTTGCTGTCGCTTTTTTCGATC
ATTGATACAAGTAACGTGGTCGATTTTACTGTCGTATTTTTCGATCATTA
ACACAGAAAACATGTTCAATTTTTTGCTGACATCAAAATTGATACAAATA
ACGTGGTCGGTTCTGCGTTCTTTTTTTTTTCCGGCCAGGTTGAGAGGGGG
ATGAAGGCCGCGGCGAAAGAGGAGCGTCAGAGGAAGGTGGAGGAGGAGCG
CGAGAGGAAGAGGGAGGCCAAGGCTCAAGAGGCGGTGGCGAAGAAGGCGG
ACCTCGAGGAGAAGAAGGTCGAGAGGATCTACAAGAAGCTCGAGGAGAAG
GTGACGGTTGGACTGCCTGCTTCGTCTGTTATTGTTGTTGTTGTTATTGG
TGTTGTTGTTGCTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGCTG
TTGCTGTTGGTGTTGTTGTCGTTGTTGTTGTGGTCGATATTGTTTATACA
CAGCTACTTGTTCCAGTACCTTTTGTCCGTCTTGACCAAGGCAAAGCAAG
AGTTCCTTTGGTCAAAAACATGTTTGCAACATCAAGATGTACGAGAACTC
CCTACCACTATCGACCTTTTTACGGATATCGACGCGCCAACTCAGACAAG
CGCTCTTTCGATGAAATTTATCCCATTTTCTCGAGAAGCTTAATTTGAGT
GGAAAATTGAAATTGGCTTAATTTGAGTGGAAAATTGAAATTGGATATGC
AATAATCAGCATTTCCAGAGAACAAAATCTTCGAAGCTCCGTACATCTGA
CCAGGGAATCGACATAACATACACTTTGATGCACGATTTTTTTTTGTTGC
TCCTCGTGGCTCTGTCCAATCAAACCTTTTCCCCGAAAAAAAAAAAGGTT
CTGCGAGAGCAAGCGCGCGAGAAAGAGCGTCTGTCGCGGGCCCTTCGAAG
ACTGTTCGAGGCCGAGGTATCCAAGAGAAGAACCTTCGCGCGTCAGACCC
TGCAGACGAGGGCCGACGCGGAAGGGATAGCCGCCATCCTGAGGGACGAC
GCCTGCGAAGGTCTGGAGTGTCGGACAGAAGAGGTGAGAAAAAAAAAATG
CGCGCGATCCTTCTCTGCCTGCCTATCTCTCTGTCTCTCTCTCTCGCTCT
CTCTCTCTCTCTCTCTTTCTCTCTCTCTCTTTCTGCAGTGCCCTCCGCGG
GTTGTGTTGGCCTCTCTTTTTTTTTTCTTTTTCCGTTAACCTTCCCACTC
CATTTGATGATGATGCACCGCGCCTGCCCGCCCGCCTGCCTGCCCGCCTG
CCCGCCTGCCTGCCTGCATGCCTACCTACTTGTCTGCCAGCAACAAGCCG
CCGAGGACCGAGATCACGACATCCTACAGGCCGCCCTAGCCAGTGCTCGC
GGAACAGCACCACGGGGCGGCGGCGGCGGCGGCAGCTCTGGCAAGCGCTC
TAGCAGCAGCCCTGCGTTGCCCAAAGCGGAGGCCGGCGCTTCATCCGCAT
CCGGCGGCGGCGGGGCGAGGCTCGGGGGGCAGGTGGTGCTGGAGGAGCTG
GGGCTGTCTCAGCAGCAGGTCGCGAACCTTCTCCAGCTGTGGGATTTCTT
GTACTGCTTCCGGGAGCCGCTGTCGGAGGCCGGGTTCACCCCCGCCCGCC
CCCTGTCTCTAAAGCGCCTCGCTCAGGCTCTGGACGCCGTGGACGACATG
TGCCGCGGGTAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16325:31..2742+

>mRNA_E-fasciculatus_F_contig16325.4296.1 ID=mRNA_E-fasciculatus_F_contig16325.4296.1|Name=mRNA_E-fasciculatus_F_contig16325.4296.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1926bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16325:31..2742+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGGGCTACGTCTTCGAGGCCCACCGCACGGAGAAGACGTTCAAGAGGAT
CACCAAGGTCAACGAGCGCACTAAGGGGCCGAGCAACGTCACTGAGAGGT
CCACGGCAAAGCTCGCAGCCACCGGATTCAGAAGGGCTACGTCTTCGAGG
CCCACCGCACGGAGAAGACGTTCAAGAGGATCACCAAGGTCAACGAGCGC
ACTAAGGGGCCGAGCAACGTCACTGAGAGGTCCACGGCAAAGCTCGCAGC
CACCGGATTCAGGAGGAACGTACTAGACGGGAGGACGATGATCGAACAGC
TCTCGGAGCTGGAGAGGCGCTCGGACCCCGTGGCCGTCGAGCTCGCCGGC
GTGTGGACTTCCAGCTACGCGGTGGAGGAACGTACTAGACGGGAGGACGA
TGATCGAACAGCTCTCGGAGCTGGAGAGGCGCTCGGACCCCGTGGCCGTC
GAGCTCGCCGGCGTGTGGACTTCCAGCTACGCGGTGGTTGAGAGGGGGAT
GAAGGCCGCGGCGAAAGAGGAGCGTCAGAGGAAGGTGGAGGAGGAGCGCG
AGAGGAAGAGGGAGGCCAAGGCTCAAGAGGCGGTGGCGAAGAAGGCGGAC
CTCGAGGAGAAGAAGGTCGAGAGGATCTACAAGAAGCTCGAGGAGAAGGT
TGAGAGGGGGATGAAGGCCGCGGCGAAAGAGGAGCGTCAGAGGAAGGTGG
AGGAGGAGCGCGAGAGGAAGAGGGAGGCCAAGGCTCAAGAGGCGGTGGCG
AAGAAGGCGGACCTCGAGGAGAAGAAGGTCGAGAGGATCTACAAGAAGCT
CGAGGAGAAGGTTCTGCGAGAGCAAGCGCGCGAGAAAGAGCGTCTGTCGC
GGGCCCTTCGAAGACTGTTCGAGGCCGAGGTATCCAAGAGAAGAACCTTC
GCGCGTCAGACCCTGCAGACGAGGGCCGACGCGGAAGGGATAGCCGCCAT
CCTGAGGGACGACGCCTGCGAAGGTCTGGAGTGTCGGACAGAAGAGGTTC
TGCGAGAGCAAGCGCGCGAGAAAGAGCGTCTGTCGCGGGCCCTTCGAAGA
CTGTTCGAGGCCGAGGTATCCAAGAGAAGAACCTTCGCGCGTCAGACCCT
GCAGACGAGGGCCGACGCGGAAGGGATAGCCGCCATCCTGAGGGACGACG
CCTGCGAAGGTCTGGAGTGTCGGACAGAAGAGCAACAAGCCGCCGAGGAC
CGAGATCACGACATCCTACAGGCCGCCCTAGCCAGTGCTCGCGGAACAGC
ACCACGGGGCGGCGGCGGCGGCGGCAGCTCTGGCAAGCGCTCTAGCAGCA
GCCCTGCGTTGCCCAAAGCGGAGGCCGGCGCTTCATCCGCATCCGGCGGC
GGCGGGGCGAGGCTCGGGGGGCAGGTGGTGCTGGAGGAGCTGGGGCTGTC
TCAGCAGCAGGTCGCGAACCTTCTCCAGCTGTGGGATTTCTTGTACTGCT
TCCGGGAGCCGCTGTCGGAGGCCGGGTTCACCCCCGCCCGCCCCCTGTCT
CTAAAGCGCCTCGCTCAGGCTCTGGACGCCGTGGACGACATGTGCCGCGG
GTAACAACAAGCCGCCGAGGACCGAGATCACGACATCCTACAGGCCGCCC
TAGCCAGTGCTCGCGGAACAGCACCACGGGGCGGCGGCGGCGGCGGCAGC
TCTGGCAAGCGCTCTAGCAGCAGCCCTGCGTTGCCCAAAGCGGAGGCCGG
CGCTTCATCCGCATCCGGCGGCGGCGGGGCGAGGCTCGGGGGGCAGGTGG
TGCTGGAGGAGCTGGGGCTGTCTCAGCAGCAGGTCGCGAACCTTCTCCAG
CTGTGGGATTTCTTGTACTGCTTCCGGGAGCCGCTGTCGGAGGCCGGGTT
CACCCCCGCCCGCCCCCTGTCTCTAAAGCGCCTCGCTCAGGCTCTGGACG
CCGTGGACGACATGTGCCGCGGGTAA
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