mRNA_E-fasciculatus_F_contig16324.4295.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16324.4295.1
Unique NamemRNA_E-fasciculatus_F_contig16324.4295.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16324.4295.1 vs. uniprot
Match: A0A6H5K5I4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5I4_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 8.800e-10
Identity = 41/58 (70.69%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:   13 GRVANNHTEPRGGGAVKSLLEAAAAAAVSAAGWNWRTVWNQEEESGHVAAPADVSSGR 186
            GRVAN HT+P G G VKSLLE AAAA VSAAGWNWRT WNQ E      A A VSSGR
Sbjct:  231 GRVANYHTDPGGSGTVKSLLEVAAAA-VSAAGWNWRTFWNQGENGD---ASATVSSGR 284
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16324.4295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K5I4_9PHAE8.800e-1070.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16324contigE-fasciculatus_F_contig16324:1653..2772 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1120
Cds size729
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928103.6388016-UTR-E-fasciculatus_F_contig16324:1652..20431622928103.6388016-UTR-E-fasciculatus_F_contig16324:1652..2043Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16324 1653..2043 +
1695995821.0040174-UTR-E-fasciculatus_F_contig16324:1652..20431695995821.0040174-UTR-E-fasciculatus_F_contig16324:1652..2043Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16324 1653..2043 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928103.6567721-CDS-E-fasciculatus_F_contig16324:2043..27721622928103.6567721-CDS-E-fasciculatus_F_contig16324:2043..2772Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16324 2044..2772 +
1695995821.0150568-CDS-E-fasciculatus_F_contig16324:2043..27721695995821.0150568-CDS-E-fasciculatus_F_contig16324:2043..2772Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16324 2044..2772 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16324.4295.1prot_E-fasciculatus_F_contig16324.4295.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16324 2044..2772 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16324.4295.1

>prot_E-fasciculatus_F_contig16324.4295.1 ID=prot_E-fasciculatus_F_contig16324.4295.1|Name=mRNA_E-fasciculatus_F_contig16324.4295.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=243bp
MISLQPCSGRLGSCDLRLRLRVRNLGSLSSLNRFSGGLEGKKAFSLIELP
RSRLPRCSGRQACLCACRRGGAQARVGKAKARARRCSDSWDKASQRLRFV
TNLRRQEAFVRRRYVSAWFQQEKNTGPMRRGGRRRLGLFLFCAKTIIYRS
FCVSLHDRTTRFDGSRPPYRPSYGTVHVVDLFPAIAGGLCRDIVSVLRSE
EAATVHDSGTGVFGGVIEGQTVHLLRTVECAGAFFVVSFCELP
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mRNA from alignment at E-fasciculatus_F_contig16324:1653..2772+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16324.4295.1 ID=mRNA_E-fasciculatus_F_contig16324.4295.1|Name=mRNA_E-fasciculatus_F_contig16324.4295.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1120bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16324:1653..2772+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGTTGCGGTGGTGGTAGGGTGGCCAATAATCACACGGAGCCCCGTGGTGG
CGGGGCCGTCAAGAGCCTTCTCGAGGCGGCGGCGGCGGCGGCGGTGTCTG
CCGCCGGCTGGAATTGGAGGACGGTTTGGAATCAAGAAGAAGAAAGCGGT
CACGTCGCCGCCCCCGCCGATGTCTCCAGCGGGAGGTAATTGAGGAGGCT
GGGCTGCTGCTGCTTTTGCTATGCGAGAGAGAAAGGGGCAGTTGCAAAAC
GTTCCAAGCGCCCAGGCTATAATTCCTTTCTTTGCGTTGTTTGCCGGGCG
ATATTCTCCGGCAGCGGTTTCGTCTAGAGAGAGAGGTATCCGTGCAGCAG
CGGCATGTTCTGTATGGCAGAGGGCTTGATTGGTAGGGAAGATGATCAGC
CTACAGCCTTGCTCGGGACGTCTGGGGTCATGCGACCTCCGACTCCGTCT
CCGCGTGCGAAACCTGGGTAGCCTCTCTTCTCTAAATCGTTTTTCTGGAG
GACTGGAAGGAAAAAAAGCTTTTTCTCTCATAGAACTCCCCCGCTCAAGG
CTACCCCGCTGTTCCGGAAGGCAGGCGTGTTTGTGCGCGTGTAGAAGAGG
CGGCGCACAAGCGCGTGTGGGTAAAGCTAAAGCTAGGGCCAGACGATGTT
CGGATTCCTGGGACAAAGCATCACAGCGGTTACGGTTTGTGACCAATTTG
CGTCGGCAGGAGGCATTCGTTCGGCGGCGTTATGTTTCAGCTTGGTTCCA
GCAAGAGAAGAACACCGGCCCCATGCGACGTGGTGGTCGACGTAGATTGG
GTTTATTTTTATTTTGTGCTAAGACAATAATTTATCGTTCTTTTTGTGTT
TCGCTACACGATCGAACGACTAGGTTTGACGGCTCCCGTCCTCCTTACCG
TCCTTCTTATGGTACGGTACACGTTGTTGATTTGTTCCCGGCGATAGCTG
GGGGGTTATGTAGAGACATCGTGTCTGTGTTGAGGTCGGAGGAAGCCGCA
ACCGTTCATGACTCCGGCACTGGTGTCTTCGGTGGTGTCATCGAAGGTCA
AACAGTCCACTTGCTCCGCACAGTAGAATGTGCTGGAGCGTTTTTTGTTG
TCTCTTTTTGTGAATTGCCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16324:1653..2772+

>mRNA_E-fasciculatus_F_contig16324.4295.1 ID=mRNA_E-fasciculatus_F_contig16324.4295.1|Name=mRNA_E-fasciculatus_F_contig16324.4295.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1458bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16324:1653..2772+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATCAGCCTACAGCCTTGCTCGGGACGTCTGGGGTCATGCGACCTCCG
ACTCCGTCTCCGCGTGCGAAACCTGGGTAGCCTCTCTTCTCTAAATCGTT
TTTCTGGAGGACTGGAAGGAAAAAAAGCTTTTTCTCTCATAGAACTCCCC
CGCTCAAGGCTACCCCGCTGTTCCGGAAGGCAGGCGTGTTTGTGCGCGTG
TAGAAGAGGCGGCGCACAAGCGCGTGTGGGTAAAGCTAAAGCTAGGGCCA
GACGATGTTCGGATTCCTGGGACAAAGCATCACAGCGGTTACGGTTTGTG
ACCAATTTGCGTCGGCAGGAGGCATTCGTTCGGCGGCGTTATGTTTCAGC
TTGGTTCCAGCAAGAGAAGAACACCGGCCCCATGCGACGTGGTGGTCGAC
GTAGATTGGGTTTATTTTTATTTTGTGCTAAGACAATAATTTATCGTTCT
TTTTGTGTTTCGCTACACGATCGAACGACTAGGTTTGACGGCTCCCGTCC
TCCTTACCGTCCTTCTTATGGTACGGTACACGTTGTTGATTTGTTCCCGG
CGATAGCTGGGGGGTTATGTAGAGACATCGTGTCTGTGTTGAGGTCGGAG
GAAGCCGCAACCGTTCATGACTCCGGCACTGGTGTCTTCGGTGGTGTCAT
CGAAGGTCAAACAGTCCACTTGCTCCGCACAGTAGAATGTGCTGGAGCGT
TTTTTGTTGTCTCTTTTTGTGAATTGCCGATGATCAGCCTACAGCCTTGC
TCGGGACGTCTGGGGTCATGCGACCTCCGACTCCGTCTCCGCGTGCGAAA
CCTGGGTAGCCTCTCTTCTCTAAATCGTTTTTCTGGAGGACTGGAAGGAA
AAAAAGCTTTTTCTCTCATAGAACTCCCCCGCTCAAGGCTACCCCGCTGT
TCCGGAAGGCAGGCGTGTTTGTGCGCGTGTAGAAGAGGCGGCGCACAAGC
GCGTGTGGGTAAAGCTAAAGCTAGGGCCAGACGATGTTCGGATTCCTGGG
ACAAAGCATCACAGCGGTTACGGTTTGTGACCAATTTGCGTCGGCAGGAG
GCATTCGTTCGGCGGCGTTATGTTTCAGCTTGGTTCCAGCAAGAGAAGAA
CACCGGCCCCATGCGACGTGGTGGTCGACGTAGATTGGGTTTATTTTTAT
TTTGTGCTAAGACAATAATTTATCGTTCTTTTTGTGTTTCGCTACACGAT
CGAACGACTAGGTTTGACGGCTCCCGTCCTCCTTACCGTCCTTCTTATGG
TACGGTACACGTTGTTGATTTGTTCCCGGCGATAGCTGGGGGGTTATGTA
GAGACATCGTGTCTGTGTTGAGGTCGGAGGAAGCCGCAACCGTTCATGAC
TCCGGCACTGGTGTCTTCGGTGGTGTCATCGAAGGTCAAACAGTCCACTT
GCTCCGCACAGTAGAATGTGCTGGAGCGTTTTTTGTTGTCTCTTTTTGTG
AATTGCCG
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