mRNA_E-fasciculatus_F_contig16322.4293.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16322.4293.1
Unique NamemRNA_E-fasciculatus_F_contig16322.4293.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16322.4293.1 vs. uniprot
Match: D7FSL1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSL1_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 6.970e-41
Identity = 75/96 (78.12%), Postives = 86/96 (89.58%), Query Frame = 1 
Query:   49 MGVKDATEAKLKKQETQLVVVEHATKICAVLCNEMYGDLMDVIDEVQEEARQRKFNRQELLKASGSTAKELLDKLGGALTFHAQRKSSAQENMAST 336
            M VKDA EAKLKKQ+TQLVVVEHAT+IC++LCNEM+GDL+DVI EVQ +ARQRKFNRQ+ +K   STAKELLDKLGGALTFHA+RKSSAQ  MA+T
Sbjct:    1 MSVKDAAEAKLKKQKTQLVVVEHATRICSLLCNEMFGDLIDVIGEVQADARQRKFNRQQHVK---STAKELLDKLGGALTFHAERKSSAQGTMAAT 93
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16322.4293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSL1_ECTSI6.970e-4178.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16322contigE-fasciculatus_F_contig16322:169..2280 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-04_000420.1
Exons3
Model size339
Cds size339
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16322.4293.1prot_E-fasciculatus_F_contig16322.4293.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16322 169..2280 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928103.5365167-CDS-E-fasciculatus_F_contig16322:168..3221622928103.5365167-CDS-E-fasciculatus_F_contig16322:168..322Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16322 169..322 +
1695995820.9668293-CDS-E-fasciculatus_F_contig16322:168..3221695995820.9668293-CDS-E-fasciculatus_F_contig16322:168..322Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16322 169..322 +
1622928103.5555477-CDS-E-fasciculatus_F_contig16322:1012..11011622928103.5555477-CDS-E-fasciculatus_F_contig16322:1012..1101Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16322 1013..1101 +
1695995820.978895-CDS-E-fasciculatus_F_contig16322:1012..11011695995820.978895-CDS-E-fasciculatus_F_contig16322:1012..1101Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16322 1013..1101 +
1622928103.5746815-CDS-E-fasciculatus_F_contig16322:2184..22801622928103.5746815-CDS-E-fasciculatus_F_contig16322:2184..2280Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16322 2185..2280 +
1695995820.991499-CDS-E-fasciculatus_F_contig16322:2184..22801695995820.991499-CDS-E-fasciculatus_F_contig16322:2184..2280Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16322 2185..2280 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16322.4293.1

>prot_E-fasciculatus_F_contig16322.4293.1 ID=prot_E-fasciculatus_F_contig16322.4293.1|Name=mRNA_E-fasciculatus_F_contig16322.4293.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=113bp
QGQLGGCDPLAARQRAMGVKDATEAKLKKQETQLVVVEHATKICAVLCNE
MYGDLMDVIDEVQEEARQRKFNRQELLKASGSTAKELLDKLGGALTFHAQ
RKSSAQENMAST*
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mRNA from alignment at E-fasciculatus_F_contig16322:169..2280+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16322.4293.1 ID=mRNA_E-fasciculatus_F_contig16322.4293.1|Name=mRNA_E-fasciculatus_F_contig16322.4293.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2112bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16322:169..2280+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAAGGCCAGCTGGGGGGCTGCGACCCGCTGGCGGCGCGTCAGAGAGCCAT
GGGCGTCAAAGACGCCACCGAGGCTAAGCTCAAGAAGCAGGAGACTCAGC
TGGTCGTTGTCGAGCACGCCACCAAGATTTGCGCGGTGCTTTGCAACGAG
ATGTGTGAGTACAGGCATATCGCTTCTGTTTTCTTTAAAGAAAAATACAA
GTACAAACACCGAAAGACTACCCGTCCGAGAAAAAGCCACAGTCCAAGGG
GATGTGTTGAAGTCTTTACAATGAATGGTAAAAAACCGACTGGGTACTGG
GCTTATTTTGAGTCGTTTTCAAGCCTTTTTTTGTCTTCACTTCAAATCAG
CGCTCGCAGCACTAGACTTGTTGTGCCGTTTACTCCTACCCGTGGTTGCG
GTACCTCTTCCTGTTTTTTTTTCCCCTTTTTTAGTAGAGGCGGGGCGGCA
CCTAACGCGGCAGCGTATCTCAAGAACCATTGGTAGATAAATAGTTTGAC
TGCTGTTCGAAGGATTTTGGTTTTGTTTGTTGTTCGTTTAGTTTTGATAT
CTGGACGTTGTGTACCCTTTTCGGGTAGTTGGGCTGTGACCACGGAGGCG
CCCGCCTTACTTGGACCAGTAGGGATATTAGAAGGTACTGAGCAGAGACC
AACACGACATTTAATGTGAAGACAACAACACTACAACCTCAACAAGAACA
ACAAATAATTTATGCCGAACACCTCCAACTACAGCAGTAGCTTGGCACAA
CAACACCTTTTTTTTTTCTCCACTTTTTTTCTCCACTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTCTTTTGTCGTTTCGTTTCACAACAGACGGCG
ATCTGATGGACGTTATCGACGAAGTTCAGGAAGAAGCTCGCCAAAGGAAA
TTCAACCGGCAAGAGCTATTGAAGGCAAGCGGGGTCCTCAATCGATTGCT
CTCTTTCTCACGACGTCTCAATGTTTGGCCTTTCACGCCAAACCACTCAC
CACTGCTGTGTTCGAAAGAATAGTGTTCGAAAGAATTAAGGGCCATTGGG
ATACAAATGTAGGTGCAGTGAGGGGTCCCCGAACAAGAATAGTGTTCGAA
AGAATAAGGACCATTGGGATAAAAATGTAGGTGCAGTGAGGGGTCCCCGA
ACAAGAATAGTGTTCGAAAGAATAGTGTTCGAAAGAATAAGGACCATTGG
GATACAAATGTAGGTGCAGTGAGGGATCCTCAACCAAGGCGGTAGTGGAT
CAGCTGATAGTGACCGCCATATAGAATGTGTAGAGCAGCTTGATTGTTGA
GTCTGTGCCAGGCAATTTTACCCGCCTTACATAAGGCGGGTAAACTTGAT
TACATATTCCGTCTGTGCCAGCCAATTCCACCCGCCTAATGAGGCGGGTA
TTGATAAGGCTTTCACCCGCCTTATATATACGGCGGGTAAACTTAGTAAC
ATATTCCGTCTGTGGCAGTCAATTTCACCCGCCTAATGAGGCGGGTATTG
ATAAGGCTTTCACCCGCCTCATATATACGGCGGGTAAACTTAGTAACATA
TTCCGTCTGTGGCAGTCAATTTCACCCGCGTTTACATGAGGCGGGTAAAC
TTGATAACATATTCCGTCTGTGCCAGCCAACTTCGCCCGCGTTTACATGA
GGCGGGTAAACTTGATTACATATTCCGTCTGTGCCAGCCAATTCCACCCG
CCTAATGAGGCGGGTGTTTATATGGCTTTCACCCGCGTTTACATGAGGCG
GGAAAACTTGATAACATACTCCGTCTGTGCCAGCCAACTTCACCCGCCTT
GCATAGGGCAACCGCCTTGCATACGGCAACCGCCTTGCATAGGGCAACCG
CCTTGCATAGGGCAACCGCCTTGCATAGGGCAACCGCCTTACCCAGACCC
CTTTGTGGATGTCCCCGAACATGGCGGTTGTGGGGCAGCTGATAGTGACC
GCCTTGTGTGGAGCAGCCGCCATATTTACGGTAAGTCCTCTGCAACTCCC
CGAAACTGCTCCACAGAGCACCGCGAAGGAGCTTCTGGACAAGCTGGGGG
GCGCCTTGACCTTTCACGCCCAGAGGAAGTCGTCAGCCCAGGAGAACATG
GCATCAACGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16322:169..2280+

>mRNA_E-fasciculatus_F_contig16322.4293.1 ID=mRNA_E-fasciculatus_F_contig16322.4293.1|Name=mRNA_E-fasciculatus_F_contig16322.4293.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=678bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16322:169..2280+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAAGGCCAGCTGGGGGGCTGCGACCCGCTGGCGGCGCGTCAGAGAGCCAT
GGGCGTCAAAGACGCCACCGAGGCTAAGCTCAAGAAGCAGGAGACTCAGC
TGGTCGTTGTCGAGCACGCCACCAAGATTTGCGCGGTGCTTTGCAACGAG
ATGTCAAGGCCAGCTGGGGGGCTGCGACCCGCTGGCGGCGCGTCAGAGAG
CCATGGGCGTCAAAGACGCCACCGAGGCTAAGCTCAAGAAGCAGGAGACT
CAGCTGGTCGTTGTCGAGCACGCCACCAAGATTTGCGCGGTGCTTTGCAA
CGAGATGTACGGCGATCTGATGGACGTTATCGACGAAGTTCAGGAAGAAG
CTCGCCAAAGGAAATTCAACCGGCAAGAGCTATTGAAGGCAAGCGGGACG
GCGATCTGATGGACGTTATCGACGAAGTTCAGGAAGAAGCTCGCCAAAGG
AAATTCAACCGGCAAGAGCTATTGAAGGCAAGCGGGAGCACCGCGAAGGA
GCTTCTGGACAAGCTGGGGGGCGCCTTGACCTTTCACGCCCAGAGGAAGT
CGTCAGCCCAGGAGAACATGGCATCAACGTGAAGCACCGCGAAGGAGCTT
CTGGACAAGCTGGGGGGCGCCTTGACCTTTCACGCCCAGAGGAAGTCGTC
AGCCCAGGAGAACATGGCATCAACGTGA
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