mRNA_E-fasciculatus_F_contig16321.4292.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16321.4292.1
Unique NamemRNA_E-fasciculatus_F_contig16321.4292.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16321.4292.1 vs. uniprot
Match: D8LJ34_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ34_ECTSI)

HSP 1 Score: 282 bits (721), Expect = 2.650e-87
Identity = 143/144 (99.31%), Postives = 143/144 (99.31%), Query Frame = 2 
Query:    2 REKLPSGQVGQAQPGVPLTLALVYEAGTEVHSQEILQVQSDTQLVTNEHGRANLKFKITEVSQRHQSQRFCVKICPDVRLAPEFGNVAPVVTVPVMVLSKRKNRRLKAEKMAQSAAGGYVPSSSGMGNMAGLMWATAGANGHLP 433
            REKLPSGQVGQAQPGVPLTLALVYEAGTEVHSQEILQVQSDTQLVTNEHGRANLKFKITEVSQRHQSQRFCVKICPDVRLAPEF NVAPVVTVPVMVLSKRKNRRLKAEKMAQSAAGGYVPSSSGMGNMAGLMWATAGANGHLP
Sbjct:  189 REKLPSGQVGQAQPGVPLTLALVYEAGTEVHSQEILQVQSDTQLVTNEHGRANLKFKITEVSQRHQSQRFCVKICPDVRLAPEFSNVAPVVTVPVMVLSKRKNRRLKAEKMAQSAAGGYVPSSSGMGNMAGLMWATAGANGHLP 332
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BLAST of mRNA_E-fasciculatus_F_contig16321.4292.1 vs. uniprot
Match: A0A7S4D5X0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D5X0_HETAK)

HSP 1 Score: 73.9 bits (180), Expect = 1.330e-12
Identity = 47/114 (41.23%), Postives = 62/114 (54.39%), Query Frame = 2 
Query:   14 PSGQVGQAQPGVPLTLALVYEAGTEVHSQEILQVQSDTQLVTNEHGRANLKFKITEVSQRHQSQRFCVKIC---PDVRLAPE----FGNVAPVVTVPVMVLSKRKNRRLKAEKM 334
            P+ +   A   VPL +AL+YE G  V  Q ILQ+  D++L       A L+F++ EVSQRHQ QRF +++    P    AP     F  VAPV + P  VLSKRK R    E +
Sbjct:  184 PAARARPAAQEVPLFVALLYEDGKAVGQQGILQLARDSRLAVGPGAPATLRFRVGEVSQRHQGQRFRIRVQATPPRPGAAPPGAAVFSRVAPVDSAPFTVLSKRKKRHRVGEPL 297
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BLAST of mRNA_E-fasciculatus_F_contig16321.4292.1 vs. uniprot
Match: A0A836CL24_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL24_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 7.980e-11
Identity = 36/88 (40.91%), Postives = 52/88 (59.09%), Query Frame = 2 
Query:   74 EAGTEVHSQEILQVQS--DTQLVTNEHGRANLKFKITEVSQRHQSQRFCVKICPDVRLAPEFGNVAPVVTVPVMVLSKRKNRRLKAEK 331
            E G + H QEIL         L T+ +G   ++F+I EVS+ H+SQRF V I  D     +   + P+ T P+MVLSKRK+R+ +AE+
Sbjct:  569 EGGRQAHIQEILTTVPVLSQHLETDNNGEVTVRFRIEEVSKNHRSQRFVVMITADTARMRDLPQIEPIKTAPIMVLSKRKDRKRRAEQ 656
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BLAST of mRNA_E-fasciculatus_F_contig16321.4292.1 vs. uniprot
Match: A0A6T8NBN5_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8NBN5_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 9.450e-6
Identity = 35/92 (38.04%), Postives = 54/92 (58.70%), Query Frame = 2 
Query:   47 VPLTLALVYEAGT--EVHSQEILQ-VQSDTQLVTNEHGRANLKFKITEVSQRHQSQRFCVKICPDVRLAPEFGNVAPVVTVPVMVLSKRKNR 313
            VPL L L Y+     +V +Q +L+ + S    +  + G+AN++F+I +VS+ HQ Q F V+IC D   + ++ +VAP  T  V V SKR  R
Sbjct:  166 VPLKLNLKYDGPQMLQVVNQSLLRTLGSPAHYIDPDTGKANIRFRIEDVSKNHQGQSFIVEICAD---STKYPHVAPGYTRSVSVRSKRNKR 254
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BLAST of mRNA_E-fasciculatus_F_contig16321.4292.1 vs. uniprot
Match: A0A485K4M4_9STRA (Aste57867_1135 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K4M4_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 1.290e-5
Identity = 38/102 (37.25%), Postives = 57/102 (55.88%), Query Frame = 2 
Query:   47 VPLTLALVYEAGTEVHSQEILQVQSDTQL-VTNEHGRANLKFKITEVSQRHQSQRFCVKICPD-VRLAPEFGNVAPVVTVPVMVLSKRKNRRLKAEKMAQSA 346
            +PL + L+YE+G  V  QEIL+V  D    V+   G A + F++ +VS+R   QRF V+I  D + L+          T+P+ VLSKRK+  +  +K   SA
Sbjct:  452 MPLRMTLLYESGKLVEEQEILRVVGDASTSVSMRGGTATVHFRLEKVSRRKDGQRFKVQIDVDSLHLSAS--------TIPICVLSKRKDVAVAPDKAKLSA 545
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16321.4292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LJ34_ECTSI2.650e-8799.31Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S4D5X0_HETAK1.330e-1241.23Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A836CL24_9STRA7.980e-1140.91Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6T8NBN5_9STRA9.450e-638.04Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A485K4M4_9STRA1.290e-537.25Aste57867_1135 protein n=1 Tax=Aphanomyces stellat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16321contigE-fasciculatus_F_contig16321:312..2580 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size438
Cds size435
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16321.4292.1prot_E-fasciculatus_F_contig16321.4292.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16321 312..2579 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928103.4326534-CDS-E-fasciculatus_F_contig16321:311..4771622928103.4326534-CDS-E-fasciculatus_F_contig16321:311..477Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16321 312..477 +
1695995820.9103358-CDS-E-fasciculatus_F_contig16321:311..4771695995820.9103358-CDS-E-fasciculatus_F_contig16321:311..477Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16321 312..477 +
1622928103.4449303-CDS-E-fasciculatus_F_contig16321:1031..11281622928103.4449303-CDS-E-fasciculatus_F_contig16321:1031..1128Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16321 1032..1128 +
1695995820.923834-CDS-E-fasciculatus_F_contig16321:1031..11281695995820.923834-CDS-E-fasciculatus_F_contig16321:1031..1128Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16321 1032..1128 +
1622928103.4626815-CDS-E-fasciculatus_F_contig16321:1660..17411622928103.4626815-CDS-E-fasciculatus_F_contig16321:1660..1741Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16321 1661..1741 +
1695995820.9349468-CDS-E-fasciculatus_F_contig16321:1660..17411695995820.9349468-CDS-E-fasciculatus_F_contig16321:1660..1741Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16321 1661..1741 +
1622928103.4769807-CDS-E-fasciculatus_F_contig16321:2488..25791622928103.4769807-CDS-E-fasciculatus_F_contig16321:2488..2579Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16321 2489..2579 +
1695995820.9478576-CDS-E-fasciculatus_F_contig16321:2488..25791695995820.9478576-CDS-E-fasciculatus_F_contig16321:2488..2579Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16321 2489..2579 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16321.4292.1

>prot_E-fasciculatus_F_contig16321.4292.1 ID=prot_E-fasciculatus_F_contig16321.4292.1|Name=mRNA_E-fasciculatus_F_contig16321.4292.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=145bp
EREAAVGAGGPSAARRAPHAGPRVRGRHRGALPGDPAGAVGHPARHQRAR
SRQPQVQDHRGQPKAPEPKVLRQDLSGRATGPRVRQRRSRGHRTRHGPQQ
AEESQAQGRENGTKRGWRVCSKQQRHGQHGGPDVGHCRSQRPSAP
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mRNA from alignment at E-fasciculatus_F_contig16321:312..2580+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16321.4292.1 ID=mRNA_E-fasciculatus_F_contig16321.4292.1|Name=mRNA_E-fasciculatus_F_contig16321.4292.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2269bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16321:312..2580+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGAGAGAAGCTGCCGTCGGGGCAGGTGGGCCAAGCGCAGCCCGGCGTGC
CCCTCACGCTGGCCCTCGTGTACGAGGCCGGCACCGAGGTGCACTCCCAG
GAGATCCTGCAGGTGCAGTCGGACACCCAGCTCGTCACCAACGAGCACGG
TCGCGCCAACCTCAAGGTGCGACGAGAAGGTGTCTTGATTGATAGAAAAC
GCGGCAGAGGGGTGGGAGGGGTTCGTCGTTATAGTCTTATTTGGGAGGAC
GTCCACGTCCACGTGTGTGCTTTTGTTTGCCCTTGTTATTAACATCGACC
GCGCTAACCGGCTGGCCAATGAAAAGACTTGAGTCCCAGTGCGGTCGAAA
GCACGTGTGTGTATTTGTGTGTCAGTAGGCCACTTTATTCTCTTTCTGGA
CGCTCCCGGAATGATCGCTGGTACGTATGCCACCAACTGTTTCGCGAGCT
CCCGCACGCGTATTTGAAACAGCCGAAGTGTTTTTTCGACTCTTGGGCGT
TTTTTTTGTTTATGCTGCTATTGTGGTTACTTCATGTCCTCTCTGGTTTC
AAGATTCTGGAGTACGTTTTTTGTCAGAATCGACCCGGGTTCGTGACGTC
CTTCCCCGCCGATGAGGCCGCCGCCGTCTCCCCATCTTTACTCTCGCACT
TCACTTCTTCTGATTGCTCTTCTATTTTTTTTTTAATTGCATGCCGTGCT
TGGCGTTTGGATAACCGCAGTTCAAGATCACCGAGGTCAGCCAAAGGCAC
CAGAGCCAAAGGTTCTGCGTCAAGATCTGTCCGGACGTGCGACTGGCCCC
CGAGTTCGGCAACGTCGGTGAGAGAGGAGAAACCGTTGGATTGTTCTTGG
GTCAATAGCCGAGGTGGTCTTTGTCGCCGTTTTTTTTTTTAATTGTTTCA
GGGGGGGTTGGCGTTGAGCACGACTGTAGTGATGCGCTTTGGCTGACTAG
TTCCCACAACGGATTGCTCTCGGATTGCAAGGGGGGCAGTTCAAGGTAGT
ACGAGATCGTGGACAGCACGAACGCATTGAGAAGAAAACACAGCAACCTA
ACCCTAACCGTAAAGCAACAGCACTTGCAGCACACGGCTCGTGGCACACA
CCAGACGTCGCGGCAGGGTGGCTCCTCGAAACCGCCCTAGGAACGGTGCT
TGCATCGGGCAAACCCACACATGCGTCGAACAAAAAAAAACAAAGGGTGG
CTAGATTTCACGGAGAAAATGAAGGAATATCATCACTACCTTCTCGACGC
CTGCTGTACCACAACAAGAACTACCGGAAGTGTAACCGACATGACATGAC
CCACCGTCTTTGCTTCCCCTTGCGCGCGTTGCGATGATGATGGACACAGC
TCCCGTGGTCACCGTACCCGTCATGGTCCTCAGCAAGCGGAAGAATCGCA
GGCTCAAGGCCGAGAAAATGGCACAAAGCGGTGAGTTGGGGCTAGGGCTA
GGGCTAGGCTCAAGAAGTCAGGGTAAAAAGCCCGGAGTGGTACCTGCCGT
GTGTACCCTTTTTTGGCGGGGGTGGTCGTGGGTGTTTTGTTCCGACCACG
CATGATAAAAACAGTGAGGGTTTGTGCTTCATTACAGCAGTGACAAGCGT
GTGTTTTTTTTTCAACAAAGCGTAGAAGCCGTTGTGCCGTAAAGTGAGCA
GACAGGTTGTCGAAGGCTTGGAACTTGAGGTGTCTGAGCGAATCGTCGAG
GTTAATCAATGTGTCCGGGTTGTTGCTGCGTTGAGATCACACAAGCTGTG
AGTGATCGTTTGCCTTTGTCACCGCTGTACCCGCACAAACAAGTCTTCCT
TGTTTTTTTGTGAGGGGGGTGGTGGAGGGGTTACGAGGCAAGGTGTCAAT
GGCTTGTACAGAATTCAAGGTCGTGCGGCCTTGTGCTTGAGAGCACCGAA
GTCTGGTGCTGCGGTCTGCCTGCCTTTCCCCAGGGGAACCTGAAACACGA
TTTGTTTCGTTCGGTTGGGCTCGCTGCCGTGCCTTGCTTTTTCTTTGCTG
GACAAAAAGCTGCTGGTGCCGCCGCAGCAAGACCAACCCCCCGCAGACTG
AGATGTTTTTCAGACCAAACCTTACCACAGCACGGAAAGGGGAAACGTAA
CCGTCCTTTGCCCGCGCCCACCCCGCCACCGTTTGTTTGCTGTGCGCCGC
TGATTGCCACACGACGACCCTTTGCAGCGGCTGGCGGGTATGTTCCAAGC
AGCAGCGGCATGGGCAACATGGCGGGCCTGATGTGGGCCACTGCCGGAGC
CAACGGCCATCTGCCCCCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16321:312..2580+

>mRNA_E-fasciculatus_F_contig16321.4292.1 ID=mRNA_E-fasciculatus_F_contig16321.4292.1|Name=mRNA_E-fasciculatus_F_contig16321.4292.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=870bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16321:312..2580+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGAGAGAAGCTGCCGTCGGGGCAGGTGGGCCAAGCGCAGCCCGGCGTGC
CCCTCACGCTGGCCCTCGTGTACGAGGCCGGCACCGAGGTGCACTCCCAG
GAGATCCTGCAGGTGCAGTCGGACACCCAGCTCGTCACCAACGAGCACGG
TCGCGCCAACCTCAAGGAGAGAGAAGCTGCCGTCGGGGCAGGTGGGCCAA
GCGCAGCCCGGCGTGCCCCTCACGCTGGCCCTCGTGTACGAGGCCGGCAC
CGAGGTGCACTCCCAGGAGATCCTGCAGGTGCAGTCGGACACCCAGCTCG
TCACCAACGAGCACGGTCGCGCCAACCTCAAGTTCAAGATCACCGAGGTC
AGCCAAAGGCACCAGAGCCAAAGGTTCTGCGTCAAGATCTGTCCGGACGT
GCGACTGGCCCCCGAGTTCGGCAACGTCGTTCAAGATCACCGAGGTCAGC
CAAAGGCACCAGAGCCAAAGGTTCTGCGTCAAGATCTGTCCGGACGTGCG
ACTGGCCCCCGAGTTCGGCAACGTCGCTCCCGTGGTCACCGTACCCGTCA
TGGTCCTCAGCAAGCGGAAGAATCGCAGGCTCAAGGCCGAGAAAATGGCA
CAAAGCGCTCCCGTGGTCACCGTACCCGTCATGGTCCTCAGCAAGCGGAA
GAATCGCAGGCTCAAGGCCGAGAAAATGGCACAAAGCGCGGCTGGCGGGT
ATGTTCCAAGCAGCAGCGGCATGGGCAACATGGCGGGCCTGATGTGGGCC
ACTGCCGGAGCCAACGGCCATCTGCCCCCCGGCTGGCGGGTATGTTCCAA
GCAGCAGCGGCATGGGCAACATGGCGGGCCTGATGTGGGCCACTGCCGGA
GCCAACGGCCATCTGCCCCC
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