mRNA_E-fasciculatus_F_contig1632.4290.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1632.4290.1
Unique NamemRNA_E-fasciculatus_F_contig1632.4290.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1632.4290.1 vs. uniprot
Match: D8LAX0_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAX0_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 8.780e-26
Identity = 77/98 (78.57%), Postives = 80/98 (81.63%), Query Frame = 1 
Query:   10 VEVGGGGRAGSVGRGGMRLKVGMAAAXXXXXXXXXXXXXXXXXXXXXXNMYGIFTEDGDLVEYESLVATLKERGKGREELERIVSALLEEQALLDEQE 303
            VE GG GRAGS GR GMRLKVGMAAA           XXXXXXXX   N+YGIFT+DGDLVEYESLVATLKERGKGREELERIVSALL+EQALLDEQE
Sbjct:  691 VEAGG-GRAGSAGRSGMRLKVGMAAAAEMEGAEEDYDXXXXXXXXM--NLYGIFTDDGDLVEYESLVATLKERGKGREELERIVSALLDEQALLDEQE 785
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BLAST of mRNA_E-fasciculatus_F_contig1632.4290.1 vs. uniprot
Match: A0A6H5JPP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPP0_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 2.840e-17
Identity = 44/50 (88.00%), Postives = 49/50 (98.00%), Query Frame = 1 
Query:  154 NMYGIFTEDGDLVEYESLVATLKERGKGREELERIVSALLEEQALLDEQE 303
            N+YGIFT+DGDLV+YESLVATLK RGKGRE+LERIVSALL+EQALLDEQE
Sbjct:  908 NLYGIFTDDGDLVDYESLVATLKARGKGREKLERIVSALLDEQALLDEQE 957
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1632.4290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LAX0_ECTSI8.780e-2678.57TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JPP0_9PHAE2.840e-1788.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1632contigE-fasciculatus_F_contig1632:2737..3041 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size306
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928103.175973-CDS-E-fasciculatus_F_contig1632:2736..30391622928103.175973-CDS-E-fasciculatus_F_contig1632:2736..3039Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1632 2737..3039 +
1695995820.7854283-CDS-E-fasciculatus_F_contig1632:2736..30391695995820.7854283-CDS-E-fasciculatus_F_contig1632:2736..3039Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1632 2737..3039 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1632.4290.1prot_E-fasciculatus_F_contig1632.4290.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1632 2737..3039 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1632.4290.1

>prot_E-fasciculatus_F_contig1632.4290.1 ID=prot_E-fasciculatus_F_contig1632.4290.1|Name=mRNA_E-fasciculatus_F_contig1632.4290.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=101bp
GAGVEVGGGGRAGSVGRGGMRLKVGMAAAAEMEGEEEDYDDDDDDEDDDD
DNMYGIFTEDGDLVEYESLVATLKERGKGREELERIVSALLEEQALLDEQ
E
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mRNA from alignment at E-fasciculatus_F_contig1632:2737..3041+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1632.4290.1 ID=mRNA_E-fasciculatus_F_contig1632.4290.1|Name=mRNA_E-fasciculatus_F_contig1632.4290.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=305bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1632:2737..3041+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGGCGGGCGTAGAAGTAGGGGGGGGGGGTAGAGCGGGCAGTGTAGGCCG
TGGCGGGATGCGGCTAAAGGTGGGCATGGCCGCGGCTGCGGAAATGGAAG
GGGAAGAGGAAGACTACGACGACGATGACGACGACGAAGACGACGACGAC
GACAACATGTACGGCATATTCACGGAAGACGGCGACCTCGTGGAGTATGA
GAGCTTGGTGGCGACGCTGAAAGAGCGGGGCAAGGGGCGGGAGGAGCTAG
AGCGAATCGTGAGCGCGCTCCTGGAGGAGCAGGCGCTCCTGGATGAGCAG
GAGGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1632:2737..3041+

>mRNA_E-fasciculatus_F_contig1632.4290.1 ID=mRNA_E-fasciculatus_F_contig1632.4290.1|Name=mRNA_E-fasciculatus_F_contig1632.4290.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=606bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1632:2737..3041+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGGCGGGCGTAGAAGTAGGGGGGGGGGGTAGAGCGGGCAGTGTAGGCCG
TGGCGGGATGCGGCTAAAGGTGGGCATGGCCGCGGCTGCGGAAATGGAAG
GGGAAGAGGAAGACTACGACGACGATGACGACGACGAAGACGACGACGAC
GACAACATGTACGGCATATTCACGGAAGACGGCGACCTCGTGGAGTATGA
GAGCTTGGTGGCGACGCTGAAAGAGCGGGGCAAGGGGCGGGAGGAGCTAG
AGCGAATCGTGAGCGCGCTCCTGGAGGAGCAGGCGCTCCTGGATGAGCAG
GAGGGGGCGGGCGTAGAAGTAGGGGGGGGGGGTAGAGCGGGCAGTGTAGG
CCGTGGCGGGATGCGGCTAAAGGTGGGCATGGCCGCGGCTGCGGAAATGG
AAGGGGAAGAGGAAGACTACGACGACGATGACGACGACGAAGACGACGAC
GACGACAACATGTACGGCATATTCACGGAAGACGGCGACCTCGTGGAGTA
TGAGAGCTTGGTGGCGACGCTGAAAGAGCGGGGCAAGGGGCGGGAGGAGC
TAGAGCGAATCGTGAGCGCGCTCCTGGAGGAGCAGGCGCTCCTGGATGAG
CAGGAG
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