mRNA_E-fasciculatus_F_contig16316.4289.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16316.4289.1
Unique NamemRNA_E-fasciculatus_F_contig16316.4289.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16316.4289.1 vs. uniprot
Match: D7FZP6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZP6_ECTSI)

HSP 1 Score: 197 bits (502), Expect = 1.020e-59
Identity = 105/150 (70.00%), Postives = 123/150 (82.00%), Query Frame = -2 
Query:  450 PMAAA-DSRVSIFEYIRELAAGTATLLQEVPAVGIACKTYLAFEDLVQTATCNKHELSVLSELCALVLKRYVERCAAEQREDRGLHEELVN---HIKSAEDVAGLCNGKGLKRLKQLALCRRICNDITSVRKNVLDFCTVNNLILSSEIH 887
            PMAA  DS V +F YIRE  AG ATLLQE+PAVGIACKTYLAFEDLVQTAT NK EL+VL EL  L+L+RYV+R A  + + R L EE+++   H+KSAE VAGLCNG+GLKRLKQLALCRRICN+I SVRK VL FCT+NNL+L+SE+H
Sbjct:   13 PMAAPEDSGVRVFTYIREFTAGAATLLQEIPAVGIACKTYLAFEDLVQTATSNKLELAVLGELVDLILQRYVKRWAEREHQGR-LREEVISLEKHLKSAEGVAGLCNGRGLKRLKQLALCRRICNEIESVRKKVLHFCTINNLVLTSELH 161
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BLAST of mRNA_E-fasciculatus_F_contig16316.4289.1 vs. uniprot
Match: A0A6H5KXU5_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXU5_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 9.030e-53
Identity = 103/146 (70.55%), Postives = 117/146 (80.14%), Query Frame = -2 
Query:  453 AAADSRVSIFEYIRELAAGTATLLQEVPAVGIACKTYLAFEDLVQTATCNKHELSVLSELCALVLKRYVERCAAEQREDRGLHEELV---NHIKSAEDVAGLCNGKGLKRLKQLALCRRICNDITSVRKNVLDFCTVNNLILSSEI 881
            A+ D  V +  YIRE  AG ATLLQE PAVGIACK YLAFEDLVQTAT NK ELSVL EL  LVL+RYV+RCA     ++G+ +EL+   NHIKSAE VAGLCNGKGLKRLKQL LCRRICN+I SVRKNVL FCT+NNL+L+SE+
Sbjct:    3 ASQDFGVRVLTYIREFTAGAATLLQETPAVGIACKAYLAFEDLVQTATSNKLELSVLGELIDLVLQRYVKRCA---EREQGVRQELLSLENHIKSAESVAGLCNGKGLKRLKQLTLCRRICNEIESVRKNVLHFCTINNLVLTSEL 145
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BLAST of mRNA_E-fasciculatus_F_contig16316.4289.1 vs. uniprot
Match: D8LRZ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRZ9_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 3.740e-28
Identity = 67/166 (40.36%), Postives = 96/166 (57.83%), Query Frame = -2 
Query:  438 PPMAAADSRVSIFEYIRELAAGTAT---------------LLQEVPAVGIACKTYLAFEDLVQTATCNKHELSVLSELCALVLKRYVERCAAEQREDRGLHEELVNHIKSAEDVAGLCNGKGLKRLKQLALCRRICNDITSVRKNVLDFCTVNNLILSSEIHVSVL 890
            P  +  +S VS F Y+RE+ +G AT               L++E P VGI CKT+LAFE L +TA  NK +L+ L ELC +V+   +++ +      +G  E L  H+  AE+VA LCN  G  RLK+  L RRIC DI SV  +V++FC  NN+ +S++ H  V+
Sbjct:    9 PVPSQINSEVSFFAYLREVLSGAATSSEEVPVAVALEAAHLVEEFPVVGIVCKTFLAFEQLAETARSNKDDLATLRELCCVVVTEVLDKRSDRSGLSKGF-EALEKHVNKAEEVAQLCNSGG--RLKRQVLARRICEDIVSVMNDVVEFCAANNVPISNDTHAKVV 171
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BLAST of mRNA_E-fasciculatus_F_contig16316.4289.1 vs. uniprot
Match: A0A6H5KQS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQS9_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 7.040e-26
Identity = 70/170 (41.18%), Postives = 96/170 (56.47%), Query Frame = -2 
Query:  420 DSRVSIFEYIRELAAGTAT---------------LLQEVPAVGIACKTYLAFEDLVQTATCNKHELSVLSELCALVLKRYVERCAAEQREDR-GLH---EELVNHIKSAEDVAGLCNGKGLKRLKQLALCRRICNDITSVRKNVLDFCTVNNLILSSEIHVSVLMRVRAL 872
            ++  S F Y+RE+  G AT               LL+E P VG  CKT+LAFE LV+TA  NK +L+ L ELC +V+   +++     R DR GL    E L  H+  AE+VA LCN  G  R+K+  L RRIC DI SV  NV++FC  NN+ +S++ +  V+    AL
Sbjct:   15 NNEASFFTYLREVLLGAATFSEEVPAANASEAAHLLEEFPVVGTVCKTFLAFEQLVETARSNKDDLATLRELCCVVVAGVLDK-----RSDRSGLSKRFEALEKHVNKAEEVAQLCNSSG--RVKRKVLARRICEDIVSVMNNVVEFCAANNVAISNDTNAKVVKLGMAL 177
[Close]
BLAST of mRNA_E-fasciculatus_F_contig16316.4289.1 vs. uniprot
Match: D7G0G6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0G6_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 3.910e-18
Identity = 58/155 (37.42%), Postives = 87/155 (56.13%), Query Frame = -2 
Query:  441 PPMAAADSRVSIFEYIRELAAGTATLLQEVPA-----VGIACKTYLAFEDLVQTATCNKHELSVLSELCALVLKRYVERCAAEQREDRGLHEELVNHIKSAEDVAGLCNGKGLKRLKQLALCRRICNDITSVRKNVLDFCTVNNLILSSEIHVSV 890
            P  A  D+ V    Y++E+ AG A LLQE+PA     +G  CKT+LAFE L +TA  N+  LS+L +LC  V+   ++         +    +L   +  A +VA LCNG  ++RL      R+I NDI  +R +VL +C V NL+L+ +IH ++
Sbjct:   21 PSKAIVDALV----YVQEVVAGAAMLLQEMPAEVVPILGTVCKTFLAFEQLAETAKSNREALSMLQDLCKSVVNGVLDSRKERPSILKEGFAQLQEQVDKAVEVAKLCNGSCMRRL---LWARKIRNDIAGIRADVLAYCAVINLVLADDIHANL 168
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16316.4289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FZP6_ECTSI1.020e-5970.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KXU5_9PHAE9.030e-5370.55NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LRZ9_ECTSI3.740e-2840.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQS9_9PHAE7.040e-2641.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0G6_ECTSI3.910e-1837.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16316contigE-fasciculatus_F_contig16316:4..954 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size951
Cds size567
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928103.0968304-UTR-E-fasciculatus_F_contig16316:3..3871622928103.0968304-UTR-E-fasciculatus_F_contig16316:3..387Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16316 4..387 +
1695995820.769083-UTR-E-fasciculatus_F_contig16316:3..3871695995820.769083-UTR-E-fasciculatus_F_contig16316:3..387Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16316 4..387 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928103.109415-CDS-E-fasciculatus_F_contig16316:387..9541622928103.109415-CDS-E-fasciculatus_F_contig16316:387..954Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16316 388..954 +
1695995820.7770402-CDS-E-fasciculatus_F_contig16316:387..9541695995820.7770402-CDS-E-fasciculatus_F_contig16316:387..954Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16316 388..954 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16316.4289.1prot_E-fasciculatus_F_contig16316.4289.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16316 388..954 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16316.4289.1

>prot_E-fasciculatus_F_contig16316.4289.1 ID=prot_E-fasciculatus_F_contig16316.4289.1|Name=mRNA_E-fasciculatus_F_contig16316.4289.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=189bp
MTDHLCIRFRWVKARTRINTLTCISLLRMRLFTVQKSRTFFRTEVISLHI
LRHRASCLSRFSPFPLHRPATSSALLMWFTSSSCKPRSSLCSAAHRSTYR
FRTSAHNSERTDNSCLLQVAVCTRSSNARYVLQAMPTAGTSCSSVAVPAA
SSRIYSKMLTRESAAAIGGPWKSEEKISLRWLAMSGVEK
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mRNA from alignment at E-fasciculatus_F_contig16316:4..954+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16316.4289.1 ID=mRNA_E-fasciculatus_F_contig16316.4289.1|Name=mRNA_E-fasciculatus_F_contig16316.4289.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=951bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16316:4..954+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCGAATCTGACACTCTAACTGATATTGGGTTACCCCCCACCTTCCTCTGA
GTTATTATCCTGCAGCAGTCAGTCGTGTTTTGGGGCTCCGTTCCTATCTA
CTGCCGTATCTGTTCGCGCATTGGCACATGTTAAAAGTCGAGTTCTTGTT
CAATGCCACGTCGGAACTGAGCGCCTGTCGTTATGGACAAGGCAGGCTAA
AGTTCTAAAGGTAGCGCGTTCTGTACAACAAATGAAAATGAGGCACGTAC
GTCATCATCAAAACTAACTGCTGTGTTGCCGTCGGCAACAACAACAGAAT
TTGGTCCATGAAAAAATAAAAAGAAGAGGGCGCCCGCTCCCACCCACCCC
GCCTCCGAGAGCGCCAACATCGATCGTCCAACCCATGACTGATCATCTAT
GTATTCGTTTCCGGTGGGTCAAGGCACGCACTCGCATCAACACACTCACA
TGTATCTCACTGCTAAGAATGAGGTTGTTCACAGTGCAGAAATCGAGGAC
GTTTTTTCGAACCGAGGTAATATCATTGCATATCCTCCGGCACAGGGCCA
GCTGCTTGAGCCGTTTCAGCCCCTTTCCGTTGCACAGACCGGCGACGTCC
TCAGCGCTCTTGATGTGGTTCACGAGCTCTTCATGCAAACCTCGGTCTTC
CCTTTGCTCTGCGGCGCACCGTTCCACGTATCGTTTCAGAACGAGCGCAC
ACAACTCGGAGAGAACGGACAATTCATGCTTGTTACAAGTGGCCGTTTGC
ACTAGATCCTCGAATGCCAGATACGTCTTGCAGGCGATGCCCACTGCCGG
TACCTCCTGCAGCAGCGTAGCGGTTCCAGCCGCGAGCTCCCGGATATACT
CGAAGATGCTCACCCGAGAGTCGGCAGCTGCCATCGGCGGCCCGTGGAAA
AGTGAGGAAAAGATTTCTTTACGCTGGTTGGCGATGTCGGGCGTCGAAAA
A
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16316:4..954+

>mRNA_E-fasciculatus_F_contig16316.4289.1 ID=mRNA_E-fasciculatus_F_contig16316.4289.1|Name=mRNA_E-fasciculatus_F_contig16316.4289.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1134bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16316:4..954+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGACTGATCATCTATGTATTCGTTTCCGGTGGGTCAAGGCACGCACTCG
CATCAACACACTCACATGTATCTCACTGCTAAGAATGAGGTTGTTCACAG
TGCAGAAATCGAGGACGTTTTTTCGAACCGAGGTAATATCATTGCATATC
CTCCGGCACAGGGCCAGCTGCTTGAGCCGTTTCAGCCCCTTTCCGTTGCA
CAGACCGGCGACGTCCTCAGCGCTCTTGATGTGGTTCACGAGCTCTTCAT
GCAAACCTCGGTCTTCCCTTTGCTCTGCGGCGCACCGTTCCACGTATCGT
TTCAGAACGAGCGCACACAACTCGGAGAGAACGGACAATTCATGCTTGTT
ACAAGTGGCCGTTTGCACTAGATCCTCGAATGCCAGATACGTCTTGCAGG
CGATGCCCACTGCCGGTACCTCCTGCAGCAGCGTAGCGGTTCCAGCCGCG
AGCTCCCGGATATACTCGAAGATGCTCACCCGAGAGTCGGCAGCTGCCAT
CGGCGGCCCGTGGAAAAGTGAGGAAAAGATTTCTTTACGCTGGTTGGCGA
TGTCGGGCGTCGAAAAAATGACTGATCATCTATGTATTCGTTTCCGGTGG
GTCAAGGCACGCACTCGCATCAACACACTCACATGTATCTCACTGCTAAG
AATGAGGTTGTTCACAGTGCAGAAATCGAGGACGTTTTTTCGAACCGAGG
TAATATCATTGCATATCCTCCGGCACAGGGCCAGCTGCTTGAGCCGTTTC
AGCCCCTTTCCGTTGCACAGACCGGCGACGTCCTCAGCGCTCTTGATGTG
GTTCACGAGCTCTTCATGCAAACCTCGGTCTTCCCTTTGCTCTGCGGCGC
ACCGTTCCACGTATCGTTTCAGAACGAGCGCACACAACTCGGAGAGAACG
GACAATTCATGCTTGTTACAAGTGGCCGTTTGCACTAGATCCTCGAATGC
CAGATACGTCTTGCAGGCGATGCCCACTGCCGGTACCTCCTGCAGCAGCG
TAGCGGTTCCAGCCGCGAGCTCCCGGATATACTCGAAGATGCTCACCCGA
GAGTCGGCAGCTGCCATCGGCGGCCCGTGGAAAAGTGAGGAAAAGATTTC
TTTACGCTGGTTGGCGATGTCGGGCGTCGAAAAA
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