mRNA_E-fasciculatus_F_contig16315.4288.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16315.4288.1
Unique NamemRNA_E-fasciculatus_F_contig16315.4288.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16315.4288.1 vs. uniprot
Match: A0A6H5JLI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLI6_9PHAE)

HSP 1 Score: 302 bits (773), Expect = 7.040e-90
Identity = 209/280 (74.64%), Postives = 218/280 (77.86%), Query Frame = 3 
Query:  489 MLLHRRQCEVRVCQARHLVPKGRRRNGDDNKPVLVADAVWALMSIDGEHNTTESCRNIEHPSWQRVAVFDLNLCRAAEGSAREAPAKPPRDSN--------LAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRPSSSSLNPFAVPETETQSLNPFASNFVPPATTPLPXXXXXXXSPNKSKRCMHTCPPAAVVAAPILRASLVLHLRVLHGRLRSKEVLGDVAVDLIPLLRSGGERLATDRLEWREEEGAPPPLLCGDGEDGAITT 1304
            MLLHRRQCEVRVCQARHLVPKGR+RNGDD   VLVADAVWALMSIDG HNTTESCRNIEHPSW+RVAVFDLNLCRAAEG AR AP KPPRDSN          XXXXXXXXXXXX     XXXXXXXXXXXXXXXXXXXXXXXXX      SLNPFAV E ETQ    FASNFVPPA TPL        SP    R   +CPPAA  AA +LRAS+VLHLRVLHGRLRSKEVLGDVAVDL+PLLRSGG+RLATDRLEW EEE   P L  G+G+ G ITT
Sbjct:    1 MLLHRRQCEVRVCQARHLVPKGRKRNGDDKPAVLVADAVWALMSIDGVHNTTESCRNIEHPSWERVAVFDLNLCRAAEGIARGAPVKPPRDSNPTAGAXXXXXXXXXXXXXXXXXFERPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLNPFAVAEAETQXXXXFASNFVPPAATPLSSPPPQAASP----RSKSSCPPAA--AAWVLRASMVLHLRVLHGRLRSKEVLGDVAVDLVPLLRSGGDRLATDRLEWLEEEDGAPLLPLGNGDAGVITT 274
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16315.4288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JLI6_9PHAE7.040e-9074.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16315contigE-fasciculatus_F_contig16315:1472..2778 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-04_001230.1
Exons1
Model size1307
Cds size1188
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928103.0048819-UTR-E-fasciculatus_F_contig16315:1471..15901622928103.0048819-UTR-E-fasciculatus_F_contig16315:1471..1590Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16315 1472..1590 +
1695995820.7422917-UTR-E-fasciculatus_F_contig16315:1471..15901695995820.7422917-UTR-E-fasciculatus_F_contig16315:1471..1590Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16315 1472..1590 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928103.019086-CDS-E-fasciculatus_F_contig16315:1590..27781622928103.019086-CDS-E-fasciculatus_F_contig16315:1590..2778Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16315 1591..2778 +
1695995820.7592437-CDS-E-fasciculatus_F_contig16315:1590..27781695995820.7592437-CDS-E-fasciculatus_F_contig16315:1590..2778Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16315 1591..2778 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16315.4288.1prot_E-fasciculatus_F_contig16315.4288.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16315 1591..2778 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16315.4288.1

>prot_E-fasciculatus_F_contig16315.4288.1 ID=prot_E-fasciculatus_F_contig16315.4288.1|Name=mRNA_E-fasciculatus_F_contig16315.4288.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=396bp
MQRVAHALVEPRTPHLTKRCESRRSLLRQIRSAGGFLGKKSLSPGLRGRS
EGAECTDCRAAGGRAERASCTQLSNPRSPLCNLAAYCYCCAVFRVRSSLP
STTAATTPQRAALPKASCTCPCPMLLHRRQCEVRVCQARHLVPKGRRRNG
DDNKPVLVADAVWALMSIDGEHNTTESCRNIEHPSWQRVAVFDLNLCRAA
EGSAREAPAKPPRDSNLAAAASAASSSSRDSSATFERPSAAAAEAARKNK
AAATPTAAAVKRPSSSSLNPFAVPETETQSLNPFASNFVPPATTPLPPPP
PAAASPNKSKRCMHTCPPAAVVAAPILRASLVLHLRVLHGRLRSKEVLGD
VAVDLIPLLRSGGERLATDRLEWREEEGAPPPLLCGDGEDGAITTP
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mRNA from alignment at E-fasciculatus_F_contig16315:1472..2778+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16315.4288.1 ID=mRNA_E-fasciculatus_F_contig16315.4288.1|Name=mRNA_E-fasciculatus_F_contig16315.4288.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1307bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16315:1472..2778+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCAGCAACGGCGGAAATGAAGTTTTGGCCCTGCCCGTCCTCGACCTGCCG
GAAACCACCAGCTACCCACGCTACTAAGCAAGCTTGCGTGAGAGCCTGGT
GCTGTTGTCTTTGGTTGGGATGCAGAGGGTTGCTCATGCACTTGTGGAAC
CACGAACGCCACACCTGACCAAACGATGTGAGAGCAGGCGTTCCCTCTTG
CGGCAGATAAGATCTGCGGGTGGGTTCCTCGGGAAAAAATCTCTCTCGCC
TGGGCTGCGGGGAAGGAGCGAAGGAGCAGAGTGCACAGACTGCAGAGCTG
CAGGCGGGAGAGCTGAGAGAGCCAGTTGCACACAACTATCAAATCCACGG
AGCCCCCTCTGTAATCTCGCCGCCTACTGCTACTGCTGTGCTGTCTTTCG
CGTTCGTTCATCATTGCCTTCGACAACCGCTGCAACAACACCACAACGTG
CAGCCCTTCCAAAGGCCTCCTGCACCTGCCCATGCCCAATGCTGCTGCAC
CGAAGGCAGTGCGAGGTGCGAGTGTGCCAGGCTCGACATCTGGTTCCAAA
GGGCAGGAGGAGGAATGGAGACGACAATAAGCCCGTGCTGGTAGCAGACG
CCGTCTGGGCGCTGATGAGCATCGACGGCGAACACAACACAACTGAGAGC
TGCCGGAACATCGAACACCCTTCGTGGCAGCGGGTGGCCGTCTTCGACCT
CAACCTCTGTCGTGCTGCTGAGGGGAGTGCAAGGGAAGCCCCAGCAAAGC
CACCAAGGGACTCGAACCTCGCGGCCGCTGCTTCCGCCGCATCCTCTTCC
TCCCGGGATTCAAGTGCAACTTTTGAACGGCCGAGTGCTGCAGCCGCAGA
AGCGGCGAGGAAAAACAAGGCAGCAGCAACACCCACCGCTGCTGCTGTCA
AGCGACCGTCGTCATCATCTCTCAACCCTTTCGCTGTACCCGAGACCGAG
ACTCAGTCACTGAACCCGTTCGCCTCCAACTTCGTGCCGCCAGCAACCAC
GCCGCTGCCGCCGCCACCCCCAGCAGCAGCATCGCCCAACAAATCTAAAC
GTTGTATGCATACTTGTCCGCCAGCGGCGGTAGTAGCAGCACCAATTCTT
CGGGCGTCCTTGGTCTTGCACCTCCGCGTACTGCACGGCCGCCTTAGGTC
AAAAGAAGTCCTGGGCGACGTGGCCGTTGACTTGATACCGCTACTTCGGT
CTGGGGGCGAACGGCTGGCCACAGATCGCTTGGAGTGGCGGGAGGAAGAA
GGCGCGCCGCCGCCGCTGCTGTGCGGTGATGGTGAGGACGGCGCAATTAC
TACTCCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16315:1472..2778+

>mRNA_E-fasciculatus_F_contig16315.4288.1 ID=mRNA_E-fasciculatus_F_contig16315.4288.1|Name=mRNA_E-fasciculatus_F_contig16315.4288.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2376bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16315:1472..2778+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCAGAGGGTTGCTCATGCACTTGTGGAACCACGAACGCCACACCTGAC
CAAACGATGTGAGAGCAGGCGTTCCCTCTTGCGGCAGATAAGATCTGCGG
GTGGGTTCCTCGGGAAAAAATCTCTCTCGCCTGGGCTGCGGGGAAGGAGC
GAAGGAGCAGAGTGCACAGACTGCAGAGCTGCAGGCGGGAGAGCTGAGAG
AGCCAGTTGCACACAACTATCAAATCCACGGAGCCCCCTCTGTAATCTCG
CCGCCTACTGCTACTGCTGTGCTGTCTTTCGCGTTCGTTCATCATTGCCT
TCGACAACCGCTGCAACAACACCACAACGTGCAGCCCTTCCAAAGGCCTC
CTGCACCTGCCCATGCCCAATGCTGCTGCACCGAAGGCAGTGCGAGGTGC
GAGTGTGCCAGGCTCGACATCTGGTTCCAAAGGGCAGGAGGAGGAATGGA
GACGACAATAAGCCCGTGCTGGTAGCAGACGCCGTCTGGGCGCTGATGAG
CATCGACGGCGAACACAACACAACTGAGAGCTGCCGGAACATCGAACACC
CTTCGTGGCAGCGGGTGGCCGTCTTCGACCTCAACCTCTGTCGTGCTGCT
GAGGGGAGTGCAAGGGAAGCCCCAGCAAAGCCACCAAGGGACTCGAACCT
CGCGGCCGCTGCTTCCGCCGCATCCTCTTCCTCCCGGGATTCAAGTGCAA
CTTTTGAACGGCCGAGTGCTGCAGCCGCAGAAGCGGCGAGGAAAAACAAG
GCAGCAGCAACACCCACCGCTGCTGCTGTCAAGCGACCGTCGTCATCATC
TCTCAACCCTTTCGCTGTACCCGAGACCGAGACTCAGTCACTGAACCCGT
TCGCCTCCAACTTCGTGCCGCCAGCAACCACGCCGCTGCCGCCGCCACCC
CCAGCAGCAGCATCGCCCAACAAATCTAAACGTTGTATGCATACTTGTCC
GCCAGCGGCGGTAGTAGCAGCACCAATTCTTCGGGCGTCCTTGGTCTTGC
ACCTCCGCGTACTGCACGGCCGCCTTAGGTCAAAAGAAGTCCTGGGCGAC
GTGGCCGTTGACTTGATACCGCTACTTCGGTCTGGGGGCGAACGGCTGGC
CACAGATCGCTTGGAGTGGCGGGAGGAAGAAGGCGCGCCGCCGCCGCTGC
TGTGCGGTGATGGTGAGGACGGCGCAATTACTACTCCGATGCAGAGGGTT
GCTCATGCACTTGTGGAACCACGAACGCCACACCTGACCAAACGATGTGA
GAGCAGGCGTTCCCTCTTGCGGCAGATAAGATCTGCGGGTGGGTTCCTCG
GGAAAAAATCTCTCTCGCCTGGGCTGCGGGGAAGGAGCGAAGGAGCAGAG
TGCACAGACTGCAGAGCTGCAGGCGGGAGAGCTGAGAGAGCCAGTTGCAC
ACAACTATCAAATCCACGGAGCCCCCTCTGTAATCTCGCCGCCTACTGCT
ACTGCTGTGCTGTCTTTCGCGTTCGTTCATCATTGCCTTCGACAACCGCT
GCAACAACACCACAACGTGCAGCCCTTCCAAAGGCCTCCTGCACCTGCCC
ATGCCCAATGCTGCTGCACCGAAGGCAGTGCGAGGTGCGAGTGTGCCAGG
CTCGACATCTGGTTCCAAAGGGCAGGAGGAGGAATGGAGACGACAATAAG
CCCGTGCTGGTAGCAGACGCCGTCTGGGCGCTGATGAGCATCGACGGCGA
ACACAACACAACTGAGAGCTGCCGGAACATCGAACACCCTTCGTGGCAGC
GGGTGGCCGTCTTCGACCTCAACCTCTGTCGTGCTGCTGAGGGGAGTGCA
AGGGAAGCCCCAGCAAAGCCACCAAGGGACTCGAACCTCGCGGCCGCTGC
TTCCGCCGCATCCTCTTCCTCCCGGGATTCAAGTGCAACTTTTGAACGGC
CGAGTGCTGCAGCCGCAGAAGCGGCGAGGAAAAACAAGGCAGCAGCAACA
CCCACCGCTGCTGCTGTCAAGCGACCGTCGTCATCATCTCTCAACCCTTT
CGCTGTACCCGAGACCGAGACTCAGTCACTGAACCCGTTCGCCTCCAACT
TCGTGCCGCCAGCAACCACGCCGCTGCCGCCGCCACCCCCAGCAGCAGCA
TCGCCCAACAAATCTAAACGTTGTATGCATACTTGTCCGCCAGCGGCGGT
AGTAGCAGCACCAATTCTTCGGGCGTCCTTGGTCTTGCACCTCCGCGTAC
TGCACGGCCGCCTTAGGTCAAAAGAAGTCCTGGGCGACGTGGCCGTTGAC
TTGATACCGCTACTTCGGTCTGGGGGCGAACGGCTGGCCACAGATCGCTT
GGAGTGGCGGGAGGAAGAAGGCGCGCCGCCGCCGCTGCTGTGCGGTGATG
GTGAGGACGGCGCAATTACTACTCCG
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