mRNA_E-fasciculatus_F_contig16309.4284.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16309.4284.1
Unique NamemRNA_E-fasciculatus_F_contig16309.4284.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16309.4284.1 vs. uniprot
Match: D7G729_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G729_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 3.070e-50
Identity = 97/110 (88.18%), Postives = 100/110 (90.91%), Query Frame = 1 
Query:   94 LLRLPFLFLLLSAAQAFVGGPNMLIGRGNAVYTKGWGSRIARHTSAARQTTSQRGLSASTAPPSMSLMLLAEDAAKAAPDLPISPEQQESIISVLSVMSSVLLLIIISGA 423
            +LRL  L LLLSAAQAFVGGPN+LIGRGNAVYTKGWGSRIARHTSAARQ TSQRGLSAS APPSMSLMLLAEDAAKAAPD+PISPEQQESII     MSSVLLLIIISGA
Sbjct:    1 MLRLTILLLLLSAAQAFVGGPNVLIGRGNAVYTKGWGSRIARHTSAARQATSQRGLSASMAPPSMSLMLLAEDAAKAAPDMPISPEQQESIIXXXXXMSSVLLLIIISGA 110
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16309.4284.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G729_ECTSI3.070e-5088.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16309contigE-fasciculatus_F_contig16309:16..839 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_011250.1
Exons2
Model size423
Cds size423
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928102.4174116-CDS-E-fasciculatus_F_contig16309:15..2511622928102.4174116-CDS-E-fasciculatus_F_contig16309:15..251Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16309 16..251 -
1695995820.4422762-CDS-E-fasciculatus_F_contig16309:15..2511695995820.4422762-CDS-E-fasciculatus_F_contig16309:15..251Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16309 16..251 -
1622928102.4295058-CDS-E-fasciculatus_F_contig16309:652..8391622928102.4295058-CDS-E-fasciculatus_F_contig16309:652..839Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16309 653..839 -
1695995820.451512-CDS-E-fasciculatus_F_contig16309:652..8391695995820.451512-CDS-E-fasciculatus_F_contig16309:652..839Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16309 653..839 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16309.4284.1prot_E-fasciculatus_F_contig16309.4284.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16309 16..839 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16309.4284.1

>prot_E-fasciculatus_F_contig16309.4284.1 ID=prot_E-fasciculatus_F_contig16309.4284.1|Name=mRNA_E-fasciculatus_F_contig16309.4284.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=141bp
VPPVGVLHAVRCITPTLAPHLLLLLFAAATMLLRLPFLFLLLSAAQAFVG
GPNMLIGRGNAVYTKGWGSRIARHTSAARQTTSQRGLSASTAPPSMSLML
LAEDAAKAAPDLPISPEQQESIISVLSVMSSVLLLIIISGA
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mRNA from alignment at E-fasciculatus_F_contig16309:16..839-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16309.4284.1 ID=mRNA_E-fasciculatus_F_contig16309.4284.1|Name=mRNA_E-fasciculatus_F_contig16309.4284.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=824bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16309:16..839- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGCCCCCGGTCGGCGTGCTGCACGCTGTGCGATGCATCACACCAACACT
AGCACCTCACCTACTGCTTCTTCTCTTCGCAGCCGCCACCATGCTGCTCC
GGCTTCCCTTTCTTTTCCTGCTGCTGAGCGCAGCGCAGGCCTTTGTGGGT
GGCCCCAACATGCTGATCGGGCGGGGGAACGCTGTATGTGAGTGTTCCCG
CGGCTGCAACCGCGCGCCTACAGGCCTACAATATGTAGTGGGTGCTCATG
TAGGTGCTCATGTTCGCAACCCCGCTGCCACGACCTCCTATTCCAATTTT
CGCCTACACATGCTAGAGATCTCTCGCATGTGTAACACTCGCTGTCCCTT
GTCTGCTGTGGGCACATCTTCGCGATTCGGATGTTAGTCTAGCATCCGAC
AGCGCTCTTTGCACGACTGTAAGGAGGATATTGATTTTGAACGTCAAGCG
AGTTGGATGAGCTCGAGATGTTGCATGCTACAGCAGTAGTTACACGAAGC
TGACCAGCACACCACACTCTACACACGTGCACGGTACACCTCCCCCCTTG
AATTCCTCTCGAACCCCTTGTGCTCTTGGCACGTTCAGATACCAAGGGGT
GGGGGTCCAGGATAGCTCGACACACCAGCGCCGCGCGGCAAACGACGTCC
CAGCGCGGGCTTTCGGCATCGACGGCCCCTCCCTCGATGAGCTTGATGCT
GCTCGCAGAGGACGCCGCGAAAGCAGCACCAGACCTGCCAATATCGCCGG
AGCAGCAGGAGTCTATCATCTCGGTGCTGAGCGTGATGTCCTCAGTGCTA
CTTCTCATCATTATCTCGGGGGCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16309:16..839-

>mRNA_E-fasciculatus_F_contig16309.4284.1 ID=mRNA_E-fasciculatus_F_contig16309.4284.1|Name=mRNA_E-fasciculatus_F_contig16309.4284.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=846bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16309:16..839- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGCCCCCGGTCGGCGTGCTGCACGCTGTGCGATGCATCACACCAACACT
AGCACCTCACCTACTGCTTCTTCTCTTCGCAGCCGCCACCATGCTGCTCC
GGCTTCCCTTTCTTTTCCTGCTGCTGAGCGCAGCGCAGGCCTTTGTGGGT
GGCCCCAACATGCTGATCGGGCGGGGGAACGCTGTATGTGCCCCCGGTCG
GCGTGCTGCACGCTGTGCGATGCATCACACCAACACTAGCACCTCACCTA
CTGCTTCTTCTCTTCGCAGCCGCCACCATGCTGCTCCGGCTTCCCTTTCT
TTTCCTGCTGCTGAGCGCAGCGCAGGCCTTTGTGGGTGGCCCCAACATGC
TGATCGGGCGGGGGAACGCTGTATATACCAAGGGGTGGGGGTCCAGGATA
GCTCGACACACCAGCGCCGCGCGGCAAACGACGTCCCAGCGCGGGCTTTC
GGCATCGACGGCCCCTCCCTCGATGAGCTTGATGCTGCTCGCAGAGGACG
CCGCGAAAGCAGCACCAGACCTGCCAATATCGCCGGAGCAGCAGGAGTCT
ATCATCTCGGTGCTGAGCGTGATGTCCTCAGTGCTACTTCTCATCATTAT
CTCGGGGGCCATACCAAGGGGTGGGGGTCCAGGATAGCTCGACACACCAG
CGCCGCGCGGCAAACGACGTCCCAGCGCGGGCTTTCGGCATCGACGGCCC
CTCCCTCGATGAGCTTGATGCTGCTCGCAGAGGACGCCGCGAAAGCAGCA
CCAGACCTGCCAATATCGCCGGAGCAGCAGGAGTCTATCATCTCGGTGCT
GAGCGTGATGTCCTCAGTGCTACTTCTCATCATTATCTCGGGGGCC
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