mRNA_E-fasciculatus_F_contig16304.4282.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16304.4282.1
Unique NamemRNA_E-fasciculatus_F_contig16304.4282.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16304.4282.1 vs. uniprot
Match: D7FK78_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK78_ECTSI)

HSP 1 Score: 403 bits (1036), Expect = 1.540e-136
Identity = 197/224 (87.95%), Postives = 212/224 (94.64%), Query Frame = 1 
Query:    1 RVSSEMREKGWTPTQRANSAIIGAFRRAEDWEGILDTTKAMLEDKQTMTEAGLVVAIKAAANVGNAAFARELLLKHGKSKHRPQEQLYVCVMVALRNVSQHDECLACWRELVLLDGLGDVKLDDRTYNLALTSAVKMQRWDEMEAIFDMMQAKAVEPTLATWRSMVDVWSAEETGDEGRLDRVFGEMERREWRPDRAVRLHAAMAYARCRAWVKALAWFDPAVS 672
            RVSSEMREKGWTPTQRANSA+IGA RRAEDWEGILDTT+AMLE+ QTMTEAGLVVAIKAAAN GNA FARELLL HGK+KHRPQEQLYVCVMVALRN  QH+ECLACWRELVLLDGLGDVKL+ +TYNLALTSAVKM+RWDEMEAI DMMQAKAVE T+ATWRSMVDVWSAEETGDEGRLDR+FGE+ RR+WRPDRAV LHAAMAYARCRAWVKA+AWFDPA++
Sbjct:  158 RVSSEMREKGWTPTQRANSAMIGALRRAEDWEGILDTTRAMLENGQTMTEAGLVVAIKAAANAGNAGFARELLLTHGKNKHRPQEQLYVCVMVALRNACQHEECLACWRELVLLDGLGDVKLNGKTYNLALTSAVKMERWDEMEAILDMMQAKAVESTVATWRSMVDVWSAEETGDEGRLDRIFGEIHRRQWRPDRAVGLHAAMAYARCRAWVKAMAWFDPALA 381
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BLAST of mRNA_E-fasciculatus_F_contig16304.4282.1 vs. uniprot
Match: A0A6H5KCB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCB7_9PHAE)

HSP 1 Score: 387 bits (995), Expect = 2.040e-129
Identity = 190/224 (84.82%), Postives = 206/224 (91.96%), Query Frame = 1 
Query:    1 RVSSEMREKGWTPTQRANSAIIGAFRRAEDWEGILDTTKAMLEDKQTMTEAGLVVAIKAAANVGNAAFARELLLKHGKSKHRPQEQLYVCVMVALRNVSQHDECLACWRELVLLDGLGDVKLDDRTYNLALTSAVKMQRWDEMEAIFDMMQAKAVEPTLATWRSMVDVWSAEETGDEGRLDRVFGEMERREWRPDRAVRLHAAMAYARCRAWVKALAWFDPAVS 672
            RVS EM+EKGWTPT+RANSA+IGA  RAEDWEGILDTT+AMLE  QTMTEAGLVVAIKAA NVGNA FARELLL HGK+KHRPQEQLYV VMVALRN SQH+ECLACWRELVLLDGLGDVKLD RTYNLAL SAVK +RWDEME I DMMQ +AVEPT+ATWRS+VDVW+AEETGDEGRLD++FGEM RREWRPDRAVRLH AMAYARCRAWVKA+AWFDPA++
Sbjct:  237 RVSKEMQEKGWTPTRRANSAMIGALWRAEDWEGILDTTRAMLEAGQTMTEAGLVVAIKAATNVGNAGFARELLLIHGKNKHRPQEQLYVLVMVALRNASQHEECLACWRELVLLDGLGDVKLDGRTYNLALMSAVKTERWDEMETILDMMQVQAVEPTVATWRSIVDVWNAEETGDEGRLDQIFGEMVRREWRPDRAVRLHVAMAYARCRAWVKAMAWFDPALT 460
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16304.4282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FK78_ECTSI1.540e-13687.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KCB7_9PHAE2.040e-12984.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16304contigE-fasciculatus_F_contig16304:396..2518 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score397.1
Seed ortholog evalue5.2e-108
Seed eggNOG ortholog2880.D7FK78
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-17_003070.1
Exons4
Model size672
Cds size657
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16304.4282.1prot_E-fasciculatus_F_contig16304.4282.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16304 411..2518 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928101.9787335-UTR-E-fasciculatus_F_contig16304:395..4101622928101.9787335-UTR-E-fasciculatus_F_contig16304:395..410Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16304 396..410 +
1695995820.3458765-UTR-E-fasciculatus_F_contig16304:395..4101695995820.3458765-UTR-E-fasciculatus_F_contig16304:395..410Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16304 396..410 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928101.9961615-CDS-E-fasciculatus_F_contig16304:410..5031622928101.9961615-CDS-E-fasciculatus_F_contig16304:410..503Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16304 411..503 +
1695995820.361045-CDS-E-fasciculatus_F_contig16304:410..5031695995820.361045-CDS-E-fasciculatus_F_contig16304:410..503Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16304 411..503 +
1622928102.0136402-CDS-E-fasciculatus_F_contig16304:1131..12931622928102.0136402-CDS-E-fasciculatus_F_contig16304:1131..1293Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16304 1132..1293 +
1695995820.3688676-CDS-E-fasciculatus_F_contig16304:1131..12931695995820.3688676-CDS-E-fasciculatus_F_contig16304:1131..1293Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16304 1132..1293 +
1622928102.0327458-CDS-E-fasciculatus_F_contig16304:1882..20651622928102.0327458-CDS-E-fasciculatus_F_contig16304:1882..2065Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16304 1883..2065 +
1695995820.3767424-CDS-E-fasciculatus_F_contig16304:1882..20651695995820.3767424-CDS-E-fasciculatus_F_contig16304:1882..2065Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16304 1883..2065 +
1622928102.048827-CDS-E-fasciculatus_F_contig16304:2299..25181622928102.048827-CDS-E-fasciculatus_F_contig16304:2299..2518Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16304 2300..2518 +
1695995820.3851418-CDS-E-fasciculatus_F_contig16304:2299..25181695995820.3851418-CDS-E-fasciculatus_F_contig16304:2299..2518Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16304 2300..2518 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16304.4282.1

>prot_E-fasciculatus_F_contig16304.4282.1 ID=prot_E-fasciculatus_F_contig16304.4282.1|Name=mRNA_E-fasciculatus_F_contig16304.4282.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=219bp
MREKGWTPTQRANSAIIGAFRRAEDWEGILDTTKAMLEDKQTMTEAGLVV
AIKAAANVGNAAFARELLLKHGKSKHRPQEQLYVCVMVALRNVSQHDECL
ACWRELVLLDGLGDVKLDDRTYNLALTSAVKMQRWDEMEAIFDMMQAKAV
EPTLATWRSMVDVWSAEETGDEGRLDRVFGEMERREWRPDRAVRLHAAMA
YARCRAWVKALAWFDPAVS
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mRNA from alignment at E-fasciculatus_F_contig16304:396..2518+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16304.4282.1 ID=mRNA_E-fasciculatus_F_contig16304.4282.1|Name=mRNA_E-fasciculatus_F_contig16304.4282.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2123bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16304:396..2518+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGGTGTCGTCGGAGATGCGGGAGAAGGGGTGGACGCCAACGCAACGTGC
GAATTCGGCCATAATCGGTGCCTTCCGGCGAGCCGAGGACTGGGAGGGGA
TTTTAGATGTGAGACTTGAGGGTTTTTGAGGAAGAGTTTTATGGGTGCAA
AGCGAGTTTGGTCTCGTTGGGAGGGAGTTCAAGATGCAAGGCTTGGGGTT
TTTGTCTTGTTTTATGCAAGCGAGGTTGGTCTATGTCGGGAAGATGAAAG
TCTTTTGCAGGGGGTGCTGTGGACGACGAAATTGAACTCAGGAGGGGCAA
GCTGGTCTATGCATGCATGTTCCCTCCCCCCTCCCCGTGCCTACTTGTAC
ATCGCCTTGACCGGCGAAAACCCGGCATATGGCTCCGTCCCGGCATGTTA
GGGATGCGAGGTCTATGGTCTAACGACTACGGCATGCACTTGCATGAGGA
CACCCCCCACTGGGGCTGAAACGGCCGGAAGCGATATCGATAGGATAGGA
TAGGTAGGACTTTTACAAGCAACTTTTGGCAAAGCAGGAAGGAACGATTG
GCCGTCGGTGATGGGTCCTGCGGGAAGAAAGCTCCGTCCTCTCGAAGACG
CGAGGCCAATGTTCTGTCTAACCGCCACAAGGCTTGCGAAACGAAACATG
CGTAATCTCCCGCCTACTTCGGTCCCGCCGGGCGTATGAATATTCCCCCA
TTATTTTTTTTTGTGGCTACGTGTGCGCTGGGACAGACGACGAAAGCAAT
GCTGGAGGACAAGCAGACGATGACGGAGGCCGGCCTGGTAGTGGCCATCA
AGGCCGCCGCCAACGTGGGCAACGCCGCCTTCGCCAGGGAGCTCCTGCTG
AAACACGGCAAGAGCAAGCACCGCCCCCAGGAGCAGCTCTACGTCTGCGT
GAGTTTTGAACGCTGCTACGTCGATCCCTCTCAATCTGTTTCCGATCCGT
GTCTCTCTTCTCTCTGTGTGTATGCCGCGGGGCGGGGGGTGAGCCGCCGA
GAGTAGCTTTCGGATTGCTCTTTGTGAGTCTGGGGGTGACGTAGGAAGGC
TTGCACGGCGTGGAAGTTTGCTGCGTTGATTTCCTCCCGGTCTACTACGC
GTGTGTTGTGATTTGAAATTCACGTTGTTCGAGTATCTACTGGCCGTGCT
TGCTGCTGCTGCTGCTGCCGCTATGGTAATCATGCAGCTCCTGTGTGGGG
TAGGTAGCACCCCCCGTTCCTTGTCTGTCTCTGCCGTGCTGCATCGGCCT
TTTCGCCACGAACCTCTTTTTTTCCGTGAGTCAAGAAGATCGCTTTTCTT
TTCTCTCGCAACTGACGCGCTCTGTTGGTCGTCGCCTGCGTGCGTTGGTC
CTCCGCGTACATTCCGTCATTCCGTAGCTCCGTTTACATTTTTGATGTAC
GCAACACAAGAGAGGTGCCGTGTCTGCCTCTTGTCACCGCAAGGCCCTGA
TGTATCTATCTTTTTGTTTTGTCCTTTTTTGTTTTAGGTCATGGTGGCCT
TGAGGAACGTCTCCCAGCACGATGAATGCCTGGCCTGCTGGAGAGAGCTG
GTGCTTCTCGATGGCCTGGGCGATGTTAAGCTCGACGATAGGACGTATAA
CCTTGCGTTGACGTCTGCGGTGAAGATGCAGCGTTGGGACGAGATGGAGG
CTATTTTCGACATGATGCAGGTGCCCAGGACTGCTGTTGGTGTTGTTGTT
GTTGTTGTTGTTGGTGGTGGTGGTGGTGGTCATGGTGTCGTGTGGCGTTG
CAGTAGTGGTGTTTTTGGAGATATTCTTGTTACTGGTGTTGCCGTTCGCT
GATGATGGTGCAGGCGAAAAATATCCAAACAGCTGCCCACCTGCTTCCTC
GCACACTGATCACCAACCCTCGTGACTCTGACCGTCCCTACCCCCCACTT
GCAGGCGAAAGCGGTAGAGCCCACCTTAGCCACGTGGCGGAGCATGGTAG
ACGTGTGGAGTGCGGAGGAGACGGGCGACGAGGGGCGTCTCGATCGGGTC
TTCGGGGAGATGGAGAGGAGAGAGTGGCGGCCGGACAGAGCCGTGCGGCT
GCACGCGGCCATGGCCTACGCGAGGTGTAGAGCGTGGGTCAAGGCTTTGG
CTTGGTTCGATCCCGCGGTGAGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16304:396..2518+

>mRNA_E-fasciculatus_F_contig16304.4282.1 ID=mRNA_E-fasciculatus_F_contig16304.4282.1|Name=mRNA_E-fasciculatus_F_contig16304.4282.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1314bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16304:396..2518+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGGGAGAAGGGGTGGACGCCAACGCAACGTGCGAATTCGGCCATAAT
CGGTGCCTTCCGGCGAGCCGAGGACTGGGAGGGGATTTTAGATATGCGGG
AGAAGGGGTGGACGCCAACGCAACGTGCGAATTCGGCCATAATCGGTGCC
TTCCGGCGAGCCGAGGACTGGGAGGGGATTTTAGATACGACGAAAGCAAT
GCTGGAGGACAAGCAGACGATGACGGAGGCCGGCCTGGTAGTGGCCATCA
AGGCCGCCGCCAACGTGGGCAACGCCGCCTTCGCCAGGGAGCTCCTGCTG
AAACACGGCAAGAGCAAGCACCGCCCCCAGGAGCAGCTCTACGTCTGCAC
GACGAAAGCAATGCTGGAGGACAAGCAGACGATGACGGAGGCCGGCCTGG
TAGTGGCCATCAAGGCCGCCGCCAACGTGGGCAACGCCGCCTTCGCCAGG
GAGCTCCTGCTGAAACACGGCAAGAGCAAGCACCGCCCCCAGGAGCAGCT
CTACGTCTGCGTCATGGTGGCCTTGAGGAACGTCTCCCAGCACGATGAAT
GCCTGGCCTGCTGGAGAGAGCTGGTGCTTCTCGATGGCCTGGGCGATGTT
AAGCTCGACGATAGGACGTATAACCTTGCGTTGACGTCTGCGGTGAAGAT
GCAGCGTTGGGACGAGATGGAGGCTATTTTCGACATGATGCAGGTCATGG
TGGCCTTGAGGAACGTCTCCCAGCACGATGAATGCCTGGCCTGCTGGAGA
GAGCTGGTGCTTCTCGATGGCCTGGGCGATGTTAAGCTCGACGATAGGAC
GTATAACCTTGCGTTGACGTCTGCGGTGAAGATGCAGCGTTGGGACGAGA
TGGAGGCTATTTTCGACATGATGCAGGCGAAAGCGGTAGAGCCCACCTTA
GCCACGTGGCGGAGCATGGTAGACGTGTGGAGTGCGGAGGAGACGGGCGA
CGAGGGGCGTCTCGATCGGGTCTTCGGGGAGATGGAGAGGAGAGAGTGGC
GGCCGGACAGAGCCGTGCGGCTGCACGCGGCCATGGCCTACGCGAGGTGT
AGAGCGTGGGTCAAGGCTTTGGCTTGGTTCGATCCCGCGGTGAGTGCGAA
AGCGGTAGAGCCCACCTTAGCCACGTGGCGGAGCATGGTAGACGTGTGGA
GTGCGGAGGAGACGGGCGACGAGGGGCGTCTCGATCGGGTCTTCGGGGAG
ATGGAGAGGAGAGAGTGGCGGCCGGACAGAGCCGTGCGGCTGCACGCGGC
CATGGCCTACGCGAGGTGTAGAGCGTGGGTCAAGGCTTTGGCTTGGTTCG
ATCCCGCGGTGAGT
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