mRNA_E-fasciculatus_F_contig16301.4281.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16301.4281.1
Unique NamemRNA_E-fasciculatus_F_contig16301.4281.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig16301.4281.1 vs. uniprot
Match: A0A6H5KM36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM36_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 1.290e-38
Identity = 72/74 (97.30%), Postives = 73/74 (98.65%), Query Frame = 1
Query:   10 FAVGYGGMRACGFTEQEARTTSIEVGMQNSALAVVLAQRGLTDPLSAIPGAVSATCHSLIGSALAAFWRTGDRG 231
            FAVGYGGMRACGFTEQEARTTSIEVGMQNSALAVVLAQRGL DPLSAIPGAVSATCHSLIGSALAA+WRTGDRG
Sbjct:  378 FAVGYGGMRACGFTEQEARTTSIEVGMQNSALAVVLAQRGLADPLSAIPGAVSATCHSLIGSALAAYWRTGDRG 451          
BLAST of mRNA_E-fasciculatus_F_contig16301.4281.1 vs. uniprot
Match: D7FZU1_ECTSI (Na+-bile acid cotransporter (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZU1_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 1.620e-35
Identity = 64/67 (95.52%), Postives = 65/67 (97.01%), Query Frame = 1
Query:   31 MRACGFTEQEARTTSIEVGMQNSALAVVLAQRGLTDPLSAIPGAVSATCHSLIGSALAAFWRTGDRG 231
            MRACGF+EQEARTTSIEVGMQNSALAVVLAQRGL DPLSAIPGAVSATCHSLIGSALAAFWRTGD G
Sbjct:    1 MRACGFSEQEARTTSIEVGMQNSALAVVLAQRGLADPLSAIPGAVSATCHSLIGSALAAFWRTGDGG 67          
BLAST of mRNA_E-fasciculatus_F_contig16301.4281.1 vs. uniprot
Match: A0A835YU74_9STRA (Bile acid:sodium symporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU74_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 4.390e-19
Identity = 44/69 (63.77%), Postives = 54/69 (78.26%), Query Frame = 1
Query:   10 FAVGYGGMRACGFTEQEARTTSIEVGMQNSALAVVLAQRGLTDPLSAIPGAVSATCHSLIGSALAAFWR 216
            F +GY   +A G  E+ +RT SIEVGMQNSALAVVLA+    DPL+A+PGA+SAT HS++GS LAAFWR
Sbjct:  248 FTLGYMAAKAAGLGERASRTVSIEVGMQNSALAVVLARSAFPDPLTALPGAISATVHSVLGSCLAAFWR 316          
BLAST of mRNA_E-fasciculatus_F_contig16301.4281.1 vs. uniprot
Match: A0A7S2Y1N2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1N2_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 2.320e-18
Identity = 45/69 (65.22%), Postives = 52/69 (75.36%), Query Frame = 1
Query:   10 FAVGYGGMRACGFTEQEARTTSIEVGMQNSALAVVLAQRGLTDPLSAIPGAVSATCHSLIGSALAAFWR 216
            FA+GY   RA G    EART SIEVGMQNSALA VLA +  +DP+ A+PGAVSATCHS++GS LA  WR
Sbjct:  345 FALGYFAPRAIGAYPAEARTVSIEVGMQNSALAAVLAAKAFSDPMIALPGAVSATCHSIMGSFLATLWR 413          
BLAST of mRNA_E-fasciculatus_F_contig16301.4281.1 vs. uniprot
Match: A0A8J9SJJ5_9CHLO (Probable sodium/metabolite cotransporter BASS1, chloroplas n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9SJJ5_9CHLO)

HSP 1 Score: 86.3 bits (212), Expect = 4.480e-18
Identity = 45/72 (62.50%), Postives = 52/72 (72.22%), Query Frame = 1
Query:   10 FAVGYGGMRACGFTEQEARTTSIEVGMQNSALAVVLAQRGLTDPLSAIPGAVSATCHSLIGSALAAFWRTGD 225
            FA+GYG  +  G  E++ART SIEVGMQNSAL  VLA     DPL+AIP A+SAT HSL+GS LA FWR  D
Sbjct:  323 FALGYGVSKLLGVKERQARTNSIEVGMQNSALGAVLATLHFADPLTAIPAAISATMHSLLGSTLAGFWRLVD 394          
BLAST of mRNA_E-fasciculatus_F_contig16301.4281.1 vs. uniprot
Match: L1JAR9_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JAR9_GUITC)

HSP 1 Score: 85.5 bits (210), Expect = 4.960e-18
Identity = 43/73 (58.90%), Postives = 53/73 (72.60%), Query Frame = 1
Query:   10 FAVGYGGMRACGFTEQEARTTSIEVGMQNSALAVVLAQRGLTDPLSAIPGAVSATCHSLIGSALAAFWRTGDR 228
            F +GY   R  G+ E  +RT SIE GMQNSAL VVLA R   DPL+A+P A+SATCHS++GS+ AA+WR G R
Sbjct:  230 FLLGYFVPRILGYPEPISRTVSIETGMQNSALGVVLATRNFADPLTALPCAISATCHSVLGSSFAAYWRLGGR 302          
BLAST of mRNA_E-fasciculatus_F_contig16301.4281.1 vs. uniprot
Match: W7U603_9STRA (Sodium bile acid symporter family protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U603_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 5.700e-18
Identity = 48/78 (61.54%), Postives = 55/78 (70.51%), Query Frame = 1
Query:    1 SFRFAVGYGGMRACGFTEQEARTTSIEVGMQNSALAVVLAQRGLTDPLSAIPGAVSATCHSLIGSALAAFW-RTGDRG 231
            SF F  G+   RA GF+ Q A+T SIE GMQNSALAVVLA+  L  PLS +PGAVSA CHS++GS  A  W R GDRG
Sbjct:  331 SFGFFFGFWMARALGFSRQVAKTVSIETGMQNSALAVVLARSSLPHPLSGLPGAVSAVCHSVLGSLAAWVWSREGDRG 408          
BLAST of mRNA_E-fasciculatus_F_contig16301.4281.1 vs. uniprot
Match: I0Z137_COCSC (BASS family transporter: sodium ion/bile acid n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z137_COCSC)

HSP 1 Score: 84.3 bits (207), Expect = 1.460e-17
Identity = 44/72 (61.11%), Postives = 52/72 (72.22%), Query Frame = 1
Query:   10 FAVGYGGMRACGFTEQEARTTSIEVGMQNSALAVVLAQRGLTDPLSAIPGAVSATCHSLIGSALAAFWRTGD 225
            FA+GYG  +  G  E++ART SIEVGMQNSAL  VLA     DPL+A+P A+SAT HSL+GS LA FWR  D
Sbjct:  262 FALGYGVSKLLGVKERQARTNSIEVGMQNSALGAVLATLHFADPLTAVPCAISATMHSLLGSTLAGFWRLID 333          
BLAST of mRNA_E-fasciculatus_F_contig16301.4281.1 vs. uniprot
Match: C1FFP0_MICCC (Bile Acid:Na+ symporter family n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FFP0_MICCC)

HSP 1 Score: 82.8 bits (203), Expect = 2.040e-17
Identity = 46/74 (62.16%), Postives = 51/74 (68.92%), Query Frame = 1
Query:   10 FAVGYGGMRACGFTEQEARTTSIEVGMQNSALAVVLAQRGLTDPLSAIPGAVSATCHSLIGSALAAFWRTGDRG 231
            FA+GYG   A GF E + RT SIEVGMQNSAL VVLA     DPL A+P A+SAT HS +GSALA  WR  D G
Sbjct:  190 FALGYGVACAFGFPEPDRRTVSIEVGMQNSALGVVLATAHFADPLVAVPCAISATVHSCLGSALAGTWRALDDG 263          
BLAST of mRNA_E-fasciculatus_F_contig16301.4281.1 vs. uniprot
Match: A0A8F9TXS2_9BACT (Bile acid:sodium symporter family protein n=1 Tax=Oleiharenicola sp. KSB-15 TaxID=2862869 RepID=A0A8F9TXS2_9BACT)

HSP 1 Score: 83.2 bits (204), Expect = 2.500e-17
Identity = 44/74 (59.46%), Postives = 54/74 (72.97%), Query Frame = 1
Query:   10 FAVGYGGMRACGFTEQEARTTSIEVGMQNSALAVVLAQRGLTDPLSAIPGAVSATCHSLIGSALAAFWRTGDRG 231
            FA+GY   R  G+  + ART SIEVGMQNS L VVLA+R   DPL+A+P A+S+  HS+IGSALA +WR  DRG
Sbjct:  235 FALGYLSARVFGYPPRIARTVSIEVGMQNSGLGVVLARRHFIDPLTAVPCAISSVFHSVIGSALAGWWRWRDRG 308          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16301.4281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KM36_9PHAE1.290e-3897.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZU1_ECTSI1.620e-3595.52Na+-bile acid cotransporter (ISS) n=1 Tax=Ectocarp... [more]
A0A835YU74_9STRA4.390e-1963.77Bile acid:sodium symporter n=1 Tax=Tribonema minus... [more]
A0A7S2Y1N2_9STRA2.320e-1865.22Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A8J9SJJ5_9CHLO4.480e-1862.50Probable sodium/metabolite cotransporter BASS1, ch... [more]
L1JAR9_GUITC4.960e-1858.90Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
W7U603_9STRA5.700e-1861.54Sodium bile acid symporter family protein n=2 Tax=... [more]
I0Z137_COCSC1.460e-1761.11BASS family transporter: sodium ion/bile acid n=1 ... [more]
C1FFP0_MICCC2.040e-1762.16Bile Acid:Na+ symporter family n=1 Tax=Micromonas ... [more]
A0A8F9TXS2_9BACT2.500e-1759.46Bile acid:sodium symporter family protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16301contigE-fasciculatus_F_contig16301:1658..2750 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.3
Seed ortholog evalue5.3e-27
Seed eggNOG ortholog2880.D7FZU1
KEGG koko:K03453
KEGG TC2.A.28
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464
EggNOG free text desc.bile acid:sodium symporter activity
EggNOG OGsCOG0385@1,KOG2718@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Exons2
Model size231
Cds size201
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16301.4281.1prot_E-fasciculatus_F_contig16301.4281.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16301 1658..2720 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928101.8928869-CDS-E-fasciculatus_F_contig16301:1657..18071622928101.8928869-CDS-E-fasciculatus_F_contig16301:1657..1807Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16301 1658..1807 -
1695995820.3086224-CDS-E-fasciculatus_F_contig16301:1657..18071695995820.3086224-CDS-E-fasciculatus_F_contig16301:1657..1807Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16301 1658..1807 -
1622928101.908854-CDS-E-fasciculatus_F_contig16301:2669..27201622928101.908854-CDS-E-fasciculatus_F_contig16301:2669..2720Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16301 2670..2720 -
1695995820.3229208-CDS-E-fasciculatus_F_contig16301:2669..27201695995820.3229208-CDS-E-fasciculatus_F_contig16301:2669..2720Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16301 2670..2720 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928101.9259121-UTR-E-fasciculatus_F_contig16301:2720..27501622928101.9259121-UTR-E-fasciculatus_F_contig16301:2720..2750Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16301 2721..2750 -
1695995820.3343205-UTR-E-fasciculatus_F_contig16301:2720..27501695995820.3343205-UTR-E-fasciculatus_F_contig16301:2720..2750Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16301 2721..2750 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16301.4281.1

>prot_E-fasciculatus_F_contig16301.4281.1 ID=prot_E-fasciculatus_F_contig16301.4281.1|Name=mRNA_E-fasciculatus_F_contig16301.4281.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=67bp
MRACGFTEQEARTTSIEVGMQNSALAVVLAQRGLTDPLSAIPGAVSATCH
SLIGSALAAFWRTGDRG
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mRNA from alignment at E-fasciculatus_F_contig16301:1658..2750-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16301.4281.1 ID=mRNA_E-fasciculatus_F_contig16301.4281.1|Name=mRNA_E-fasciculatus_F_contig16301.4281.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1093bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16301:1658..2750- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCGTTCAGATTCGCGGTGGGATACGGAGGCATGCGGGCTTGCGGTTTCAC CGAGCAAGAGGCTCGTACAACAAGTATCGAGGTGAGTTCAGAAGGACAAG CTTTGTGGTTTGATTGGCCGATCGATCCATCGAGAGGAGGGTCGACGTTG CTTTTTGTATATCTTGGCCCGATGCTCTATAGAAATTAGCAAGGAGTTGC GGCTCAAAAAGTCTAAACAAAACACCCCCTTGTCGCAATAGGACATGAAT GAAATCAATTCTCGCATCACAGTCGTCGTCTTTACTCGTTCTATGCTTTG CCCATGGTTCCGATTGTCGATTCGCATACGTTTTTTTTTTTTTTTCCCCT CCAAAATGTGCTATTTTCGAAACAGATACTCGGCTACTCCTGCTGTAGTC GAAGAAATATGAAAGTTCGAACGTTGTTGTTCTTGAGTTAGGTTTGCAAC CGCTATGCAAGACGGGGGTCTAATCGTTACGCAACTGGGTATCGAGGTCG GTGCTGAAGTAAATCAAGAATCTAACAGCACACGAACACCCAGGACGCTG CTACTCCAACTCCTGCCCCCCCCCCTCCTGTCGGCAGAACCCTTTGACGA GAATGCAATGTTAACGTTTTTTATCCCGCAATAACCCAAACTGGCGTCTT TTCATTGGTCAGCCGGTTAGCAGCTCCGAGTTGAACGCAACCAAAGAAAC ACTCACAGAAGACACATATTAACGTGCTCAACTCGAGACAGAGAGATATA GGTAGAGAGAGAGAGAGAGAGAGACAGACAGAGAGAGACAGAGACAGAGA CAGAGAGACAGAGAGAGAGACAGAGAGGCAGAGAGAGAGACACACACACA CACACACACCACGCGAAAGGTGTAGTGAGTAACAGGCAAAGTCCTCTCCT CCCGGAATGCATGCATGCATGCGTCCAACAACACATACATCAGGTTGGGA TGCAAAATTCTGCCCTGGCGGTCGTCCTGGCGCAGAGGGGCCTCACCGAC CCCCTGTCGGCAATCCCGGGAGCGGTCTCGGCGACGTGCCACTCCCTCAT AGGCAGCGCCCTGGCAGCCTTCTGGCGCACCGGGGATAGAGGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16301:1658..2750-

>mRNA_E-fasciculatus_F_contig16301.4281.1 ID=mRNA_E-fasciculatus_F_contig16301.4281.1|Name=mRNA_E-fasciculatus_F_contig16301.4281.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=402bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16301:1658..2750- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGGGCTTGCGGTTTCACCGAGCAAGAGGCTCGTACAACAAGTATCGA
GATGCGGGCTTGCGGTTTCACCGAGCAAGAGGCTCGTACAACAAGTATCG
AGGTTGGGATGCAAAATTCTGCCCTGGCGGTCGTCCTGGCGCAGAGGGGC
CTCACCGACCCCCTGTCGGCAATCCCGGGAGCGGTCTCGGCGACGTGCCA
CTCCCTCATAGGCAGCGCCCTGGCAGCCTTCTGGCGCACCGGGGATAGAG
GGGTTGGGATGCAAAATTCTGCCCTGGCGGTCGTCCTGGCGCAGAGGGGC
CTCACCGACCCCCTGTCGGCAATCCCGGGAGCGGTCTCGGCGACGTGCCA
CTCCCTCATAGGCAGCGCCCTGGCAGCCTTCTGGCGCACCGGGGATAGAG
GG
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