mRNA_E-fasciculatus_F_contig16301.4281.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig16301.4281.1 vs. uniprot
Match: A0A6H5KM36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM36_9PHAE) HSP 1 Score: 142 bits (358), Expect = 1.290e-38 Identity = 72/74 (97.30%), Postives = 73/74 (98.65%), Query Frame = 1
Query: 10 FAVGYGGMRACGFTEQEARTTSIEVGMQNSALAVVLAQRGLTDPLSAIPGAVSATCHSLIGSALAAFWRTGDRG 231
FAVGYGGMRACGFTEQEARTTSIEVGMQNSALAVVLAQRGL DPLSAIPGAVSATCHSLIGSALAA+WRTGDRG
Sbjct: 378 FAVGYGGMRACGFTEQEARTTSIEVGMQNSALAVVLAQRGLADPLSAIPGAVSATCHSLIGSALAAYWRTGDRG 451
BLAST of mRNA_E-fasciculatus_F_contig16301.4281.1 vs. uniprot
Match: D7FZU1_ECTSI (Na+-bile acid cotransporter (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZU1_ECTSI) HSP 1 Score: 124 bits (312), Expect = 1.620e-35 Identity = 64/67 (95.52%), Postives = 65/67 (97.01%), Query Frame = 1
Query: 31 MRACGFTEQEARTTSIEVGMQNSALAVVLAQRGLTDPLSAIPGAVSATCHSLIGSALAAFWRTGDRG 231
MRACGF+EQEARTTSIEVGMQNSALAVVLAQRGL DPLSAIPGAVSATCHSLIGSALAAFWRTGD G
Sbjct: 1 MRACGFSEQEARTTSIEVGMQNSALAVVLAQRGLADPLSAIPGAVSATCHSLIGSALAAFWRTGDGG 67
BLAST of mRNA_E-fasciculatus_F_contig16301.4281.1 vs. uniprot
Match: A0A835YU74_9STRA (Bile acid:sodium symporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU74_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 4.390e-19 Identity = 44/69 (63.77%), Postives = 54/69 (78.26%), Query Frame = 1
Query: 10 FAVGYGGMRACGFTEQEARTTSIEVGMQNSALAVVLAQRGLTDPLSAIPGAVSATCHSLIGSALAAFWR 216
F +GY +A G E+ +RT SIEVGMQNSALAVVLA+ DPL+A+PGA+SAT HS++GS LAAFWR
Sbjct: 248 FTLGYMAAKAAGLGERASRTVSIEVGMQNSALAVVLARSAFPDPLTALPGAISATVHSVLGSCLAAFWR 316
BLAST of mRNA_E-fasciculatus_F_contig16301.4281.1 vs. uniprot
Match: A0A7S2Y1N2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1N2_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 2.320e-18 Identity = 45/69 (65.22%), Postives = 52/69 (75.36%), Query Frame = 1
Query: 10 FAVGYGGMRACGFTEQEARTTSIEVGMQNSALAVVLAQRGLTDPLSAIPGAVSATCHSLIGSALAAFWR 216
FA+GY RA G EART SIEVGMQNSALA VLA + +DP+ A+PGAVSATCHS++GS LA WR
Sbjct: 345 FALGYFAPRAIGAYPAEARTVSIEVGMQNSALAAVLAAKAFSDPMIALPGAVSATCHSIMGSFLATLWR 413
BLAST of mRNA_E-fasciculatus_F_contig16301.4281.1 vs. uniprot
Match: A0A8J9SJJ5_9CHLO (Probable sodium/metabolite cotransporter BASS1, chloroplas n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9SJJ5_9CHLO) HSP 1 Score: 86.3 bits (212), Expect = 4.480e-18 Identity = 45/72 (62.50%), Postives = 52/72 (72.22%), Query Frame = 1
Query: 10 FAVGYGGMRACGFTEQEARTTSIEVGMQNSALAVVLAQRGLTDPLSAIPGAVSATCHSLIGSALAAFWRTGD 225
FA+GYG + G E++ART SIEVGMQNSAL VLA DPL+AIP A+SAT HSL+GS LA FWR D
Sbjct: 323 FALGYGVSKLLGVKERQARTNSIEVGMQNSALGAVLATLHFADPLTAIPAAISATMHSLLGSTLAGFWRLVD 394
BLAST of mRNA_E-fasciculatus_F_contig16301.4281.1 vs. uniprot
Match: L1JAR9_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JAR9_GUITC) HSP 1 Score: 85.5 bits (210), Expect = 4.960e-18 Identity = 43/73 (58.90%), Postives = 53/73 (72.60%), Query Frame = 1
Query: 10 FAVGYGGMRACGFTEQEARTTSIEVGMQNSALAVVLAQRGLTDPLSAIPGAVSATCHSLIGSALAAFWRTGDR 228
F +GY R G+ E +RT SIE GMQNSAL VVLA R DPL+A+P A+SATCHS++GS+ AA+WR G R
Sbjct: 230 FLLGYFVPRILGYPEPISRTVSIETGMQNSALGVVLATRNFADPLTALPCAISATCHSVLGSSFAAYWRLGGR 302
BLAST of mRNA_E-fasciculatus_F_contig16301.4281.1 vs. uniprot
Match: W7U603_9STRA (Sodium bile acid symporter family protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U603_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 5.700e-18 Identity = 48/78 (61.54%), Postives = 55/78 (70.51%), Query Frame = 1
Query: 1 SFRFAVGYGGMRACGFTEQEARTTSIEVGMQNSALAVVLAQRGLTDPLSAIPGAVSATCHSLIGSALAAFW-RTGDRG 231
SF F G+ RA GF+ Q A+T SIE GMQNSALAVVLA+ L PLS +PGAVSA CHS++GS A W R GDRG
Sbjct: 331 SFGFFFGFWMARALGFSRQVAKTVSIETGMQNSALAVVLARSSLPHPLSGLPGAVSAVCHSVLGSLAAWVWSREGDRG 408
BLAST of mRNA_E-fasciculatus_F_contig16301.4281.1 vs. uniprot
Match: I0Z137_COCSC (BASS family transporter: sodium ion/bile acid n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z137_COCSC) HSP 1 Score: 84.3 bits (207), Expect = 1.460e-17 Identity = 44/72 (61.11%), Postives = 52/72 (72.22%), Query Frame = 1
Query: 10 FAVGYGGMRACGFTEQEARTTSIEVGMQNSALAVVLAQRGLTDPLSAIPGAVSATCHSLIGSALAAFWRTGD 225
FA+GYG + G E++ART SIEVGMQNSAL VLA DPL+A+P A+SAT HSL+GS LA FWR D
Sbjct: 262 FALGYGVSKLLGVKERQARTNSIEVGMQNSALGAVLATLHFADPLTAVPCAISATMHSLLGSTLAGFWRLID 333
BLAST of mRNA_E-fasciculatus_F_contig16301.4281.1 vs. uniprot
Match: C1FFP0_MICCC (Bile Acid:Na+ symporter family n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FFP0_MICCC) HSP 1 Score: 82.8 bits (203), Expect = 2.040e-17 Identity = 46/74 (62.16%), Postives = 51/74 (68.92%), Query Frame = 1
Query: 10 FAVGYGGMRACGFTEQEARTTSIEVGMQNSALAVVLAQRGLTDPLSAIPGAVSATCHSLIGSALAAFWRTGDRG 231
FA+GYG A GF E + RT SIEVGMQNSAL VVLA DPL A+P A+SAT HS +GSALA WR D G
Sbjct: 190 FALGYGVACAFGFPEPDRRTVSIEVGMQNSALGVVLATAHFADPLVAVPCAISATVHSCLGSALAGTWRALDDG 263
BLAST of mRNA_E-fasciculatus_F_contig16301.4281.1 vs. uniprot
Match: A0A8F9TXS2_9BACT (Bile acid:sodium symporter family protein n=1 Tax=Oleiharenicola sp. KSB-15 TaxID=2862869 RepID=A0A8F9TXS2_9BACT) HSP 1 Score: 83.2 bits (204), Expect = 2.500e-17 Identity = 44/74 (59.46%), Postives = 54/74 (72.97%), Query Frame = 1
Query: 10 FAVGYGGMRACGFTEQEARTTSIEVGMQNSALAVVLAQRGLTDPLSAIPGAVSATCHSLIGSALAAFWRTGDRG 231
FA+GY R G+ + ART SIEVGMQNS L VVLA+R DPL+A+P A+S+ HS+IGSALA +WR DRG
Sbjct: 235 FALGYLSARVFGYPPRIARTVSIEVGMQNSGLGVVLARRHFIDPLTAVPCAISSVFHSVIGSALAGWWRWRDRG 308 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16301.4281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig16301.4281.1 >prot_E-fasciculatus_F_contig16301.4281.1 ID=prot_E-fasciculatus_F_contig16301.4281.1|Name=mRNA_E-fasciculatus_F_contig16301.4281.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=67bp MRACGFTEQEARTTSIEVGMQNSALAVVLAQRGLTDPLSAIPGAVSATCHback to top mRNA from alignment at E-fasciculatus_F_contig16301:1658..2750- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig16301.4281.1 ID=mRNA_E-fasciculatus_F_contig16301.4281.1|Name=mRNA_E-fasciculatus_F_contig16301.4281.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1093bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16301:1658..2750- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16301:1658..2750- >mRNA_E-fasciculatus_F_contig16301.4281.1 ID=mRNA_E-fasciculatus_F_contig16301.4281.1|Name=mRNA_E-fasciculatus_F_contig16301.4281.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=402bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16301:1658..2750- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |