mRNA_E-fasciculatus_F_contig163.4278.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig163.4278.1
Unique NamemRNA_E-fasciculatus_F_contig163.4278.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig163.4278.1 vs. uniprot
Match: A0A6H5L6D7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D7_9PHAE)

HSP 1 Score: 320 bits (820), Expect = 4.190e-106
Identity = 157/177 (88.70%), Postives = 164/177 (92.66%), Query Frame = 1 
Query:   37 MVPFIVHASVAFALLLSFPTVEASGKKHKESIEFTVFERQSDDGPRHSPLFALPVPEVEDVEYPSKMVLFNNDLYGSEDDLIDEDQEKLIGYNQGHCMETVASGGFIAECFFTYVFDDGSLTANGPFNFDVEDGVLPSFLAVTGGTGEYDGTLGCVEVSAGPAGDFPSLQFDFKLKK 567
            MV FIV+ASVAFALLL F TVEAS  KH+ S+EFTVFERQSDDGPRHSPLF LPVPE EDVEYPSKMVLFNNDLYGSEDDLIDE Q+ L+GYNQGHC+ETVASGGFIAECFFTYVFDDGSLTANGPFNFD EDGVLPSFLAVTGGTGEYDG LGCVEVSAGPA +FPSLQFDFKLKK
Sbjct:    1 MVRFIVNASVAFALLLGFATVEASRGKHEGSVEFTVFERQSDDGPRHSPLFTLPVPEAEDVEYPSKMVLFNNDLYGSEDDLIDEVQDALLGYNQGHCVETVASGGFIAECFFTYVFDDGSLTANGPFNFDAEDGVLPSFLAVTGGTGEYDGALGCVEVSAGPAEEFPSLQFDFKLKK 177
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BLAST of mRNA_E-fasciculatus_F_contig163.4278.1 vs. uniprot
Match: D8LRY1_ECTSI (Potential Allene oxide cyclase, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRY1_ECTSI)

HSP 1 Score: 223 bits (568), Expect = 5.490e-69
Identity = 106/115 (92.17%), Postives = 110/115 (95.65%), Query Frame = 1 
Query:  235 MVLFNNDLYGSEDDLIDEDQEKLIGYNQGHCMETVASGGFIAECFFTYVFDDGSLTANGPFNFDVEDGVLPSFLAVTGGTGEYDGTLGCVEVSAGPAGDFPSLQFDFKLKKNSRE 579
            MVLFNNDLYGSED LIDEDQE+LIGYNQGHC+ETVASGGFIAECFFTYVFDDGSLTANGPFNFDVEDGVLPSFLAVTGGTGEYDG  GCVEVSAGPA +FPSLQFDFKLK+ SRE
Sbjct:    1 MVLFNNDLYGSEDHLIDEDQEELIGYNQGHCVETVASGGFIAECFFTYVFDDGSLTANGPFNFDVEDGVLPSFLAVTGGTGEYDGAQGCVEVSAGPAEEFPSLQFDFKLKRKSRE 115
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BLAST of mRNA_E-fasciculatus_F_contig163.4278.1 vs. uniprot
Match: UPI0015E71C50 (Allene oxide cyclase n=1 Tax=Hyphomicrobium methylovorum TaxID=84 RepID=UPI0015E71C50)

HSP 1 Score: 59.3 bits (142), Expect = 5.470e-7
Identity = 37/97 (38.14%), Postives = 52/97 (53.61%), Query Frame = 1 
Query:  277 LIDEDQEKLIGYNQGHCMETVASGGFIAECFFTYVFDDGSLTANGPFNFDVEDGVLPSFLAVTGGTGEYDGTLGCVEVSAGPAGDFPSLQFDFKLKK 567
            + D   EK +G N G C+ TV +  +  EC +T    DG ++  GPF +D +D  L    AVTGGTG Y+G  G ++V A  A     + F F+L K
Sbjct:   63 IFDAKNEKQVGTNNGVCIRTVVAEAY--ECNWTTFLADGQISVAGPF-YDAKDATL----AVTGGTGAYEGMHGQLKVHARDA-KATEIDFRFELSK 151
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BLAST of mRNA_E-fasciculatus_F_contig163.4278.1 vs. uniprot
Match: A0A085WNT7_9DELT (Allene-oxide cyclase n=1 Tax=Hyalangium minutum TaxID=394096 RepID=A0A085WNT7_9DELT)

HSP 1 Score: 55.8 bits (133), Expect = 9.440e-6
Identity = 36/108 (33.33%), Postives = 58/108 (53.70%), Query Frame = 1 
Query:  235 MVLFNNDLYGSEDDLIDEDQEKLIGYNQGHCMETVASGGFIAECFFTYVFDDGSLTANGPFNFDVEDGVLPSFLAVTGGTGEYDGTLGCVEVS-AGPAGDFPSLQFDF 555
            ++ F N+LY       DE   + +G NQG+C+  VA   +  EC +T   + G ++  GPF +DV+     S L++TGGTG ++G  G +++    P G     +FDF
Sbjct:   58 VLTFANELY-------DETNTRKVGTNQGYCVRVVAGQAW--ECLWTAFLEGGQISVEGPF-YDVKG----STLSITGGTGNFNGARGQMQLEFRNPQG----TEFDF 147
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig163.4278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L6D7_9PHAE4.190e-10688.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRY1_ECTSI5.490e-6992.17Potential Allene oxide cyclase, partial n=1 Tax=Ec... [more]
UPI0015E71C505.470e-738.14Allene oxide cyclase n=1 Tax=Hyphomicrobium methyl... [more]
A0A085WNT7_9DELT9.440e-633.33Allene-oxide cyclase n=1 Tax=Hyalangium minutum Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig163contigE-fasciculatus_F_contig163:1924..5163 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size1288
Cds size546
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig163.4278.1prot_E-fasciculatus_F_contig163.4278.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig163 1960..4457 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928099.5190349-UTR-E-fasciculatus_F_contig163:1923..19591622928099.5190349-UTR-E-fasciculatus_F_contig163:1923..1959Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig163 1924..1959 +
1695995819.625634-UTR-E-fasciculatus_F_contig163:1923..19591695995819.625634-UTR-E-fasciculatus_F_contig163:1923..1959Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig163 1924..1959 +
1622928099.5819564-UTR-E-fasciculatus_F_contig163:4457..51631622928099.5819564-UTR-E-fasciculatus_F_contig163:4457..5163Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig163 4458..5163 +
1695995819.6745827-UTR-E-fasciculatus_F_contig163:4457..51631695995819.6745827-UTR-E-fasciculatus_F_contig163:4457..5163Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig163 4458..5163 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928099.5366852-CDS-E-fasciculatus_F_contig163:1959..22411622928099.5366852-CDS-E-fasciculatus_F_contig163:1959..2241Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig163 1960..2241 +
1695995819.6348326-CDS-E-fasciculatus_F_contig163:1959..22411695995819.6348326-CDS-E-fasciculatus_F_contig163:1959..2241Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig163 1960..2241 +
1622928099.5502636-CDS-E-fasciculatus_F_contig163:2608..27911622928099.5502636-CDS-E-fasciculatus_F_contig163:2608..2791Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig163 2609..2791 +
1695995819.6478336-CDS-E-fasciculatus_F_contig163:2608..27911695995819.6478336-CDS-E-fasciculatus_F_contig163:2608..2791Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig163 2609..2791 +
1622928099.5672011-CDS-E-fasciculatus_F_contig163:4376..44571622928099.5672011-CDS-E-fasciculatus_F_contig163:4376..4457Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig163 4377..4457 +
1695995819.6569571-CDS-E-fasciculatus_F_contig163:4376..44571695995819.6569571-CDS-E-fasciculatus_F_contig163:4376..4457Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig163 4377..4457 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig163.4278.1

>prot_E-fasciculatus_F_contig163.4278.1 ID=prot_E-fasciculatus_F_contig163.4278.1|Name=mRNA_E-fasciculatus_F_contig163.4278.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=182bp
MVPFIVHASVAFALLLSFPTVEASGKKHKESIEFTVFERQSDDGPRHSPL
FALPVPEVEDVEYPSKMVLFNNDLYGSEDDLIDEDQEKLIGYNQGHCMET
VASGGFIAECFFTYVFDDGSLTANGPFNFDVEDGVLPSFLAVTGGTGEYD
GTLGCVEVSAGPAGDFPSLQFDFKLKKNSRE*
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mRNA from alignment at E-fasciculatus_F_contig163:1924..5163+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig163.4278.1 ID=mRNA_E-fasciculatus_F_contig163.4278.1|Name=mRNA_E-fasciculatus_F_contig163.4278.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3240bp|location=Sequence derived from alignment at E-fasciculatus_F_contig163:1924..5163+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGTGAATTCCACTCGTTTGACCCTCTACGTCAAGGATGGTGCCTTTCAT
CGTTCACGCTTCGGTGGCATTCGCTCTTCTTCTGAGCTTTCCGACGGTGG
AGGCTTCCGGGAAAAAACACAAAGAATCCATCGAATTCACCGTCTTCGAG
AGGCAGAGCGATGACGGTCCTCGTCACAGCCCGCTCTTTGCTCTCCCCGT
GCCCGAGGTGGAAGATGTGGAGTATCCCTCCAAAATGGTGCTCTTCAACA
ATGACCTATACGGTTCTGAAGATGATCTGATCGACGAGGATCAAGAGAAA
CTCATCGGGTACAACCAGGTGCGTCGATACTGTCTGGAGCTAAGCGTTGT
GTACTGTCAACACGAGGACGTACGAACCATTTGATGGACGAGGATCTCGG
ATATTTTGCCACATCATTCCCGAAGTTCGGCACCAGGGATCAGTCATTCA
TCTAGCGGCGATAAGCGAGCGCTCGCATGGAATACGCGATTGTTCGTTAC
GGAAACTACCTCGGAAGACTCGCGCGTGTGTGTGCAGTGCAAGCTTGCGT
ATGGAACTTGTCGGAGATTGAAATGTCAAATCAACACGAAATAGCATGCA
TGCCTACAGCAAGGGTGGAAGTAAGATCAACGCTACCACAACGCCATTTC
CTCTATTAAAACGCTGAGGACTCGTCATGCCGCAGGGTCACTGTATGGAG
ACCGTGGCCTCCGGCGGTTTCATTGCCGAGTGCTTCTTCACGTACGTATT
CGACGACGGCTCGCTCACCGCGAACGGCCCGTTCAACTTCGATGTCGAAG
ATGGGGTTCTCCCCTCTTTTCTGGCCGTCACTGGGGGCACCGGGGAGTAC
GATGGCACCCTGGGATGTGTGAGTACCCAGGGTTACACCCACGCGTTGAT
CGATCGCTATTGAGTGTTTACTACAGAACATCTTTTGAGCAACTCATTGG
TTTACACGTACAGTAGAGTAGCGTCCTTTCTTCGGAATTGGATCAATTAA
TCCCACCTTGACCTGATAGGTTGCCTCCATCACCCTCTCGAAGTGACACC
TGTCGATGTCGATCTCTTGCGAAGAAATGCTTTTGCGCAGTTTGCTCGGA
TGTTGCTGGCCGATGCGCAAACCGATGCCAGCTTTCACACCCGACAATCA
GTGTTCTGTGAGACAGACACTCGTGCGTCGCACCCCAAGGCCAGTGTTTT
CCACCGTCGGCGCACGTCAGATCGACAACTTGCGCGTTATTTAACAATAA
TATCTGATGGACGGCACACATATTATCCTCGTAGCATAGATGTAAACCGA
CCCCGAAATATGTCGGTGCTGTGCTCCAGATACCACTGCGAGAGATGGGG
GTCGTTAGTATCTCTGGAAAATTCGAGAACACGAACATTTTGGAAACAAA
ATTCGCCAATAGATATATGTAGGTTACCGCGGCAGACTCTTGATTGAACG
ATATCTATAGTCTACATACAGTTGTACCCGGTGTGTCAATACATCCATCC
ATGGTCGATTGTATGTATGCAAACAACAATATATATATTGTTGCTTCATG
GCACCAGACAGGATACAAAGAGAGTATGTAGCAGATTGGCAAGCTGACGC
GGGACAGGACTGCCGAACCGTTTCGCGAAACCAAATCCTTAAGCGCGACG
GGGGCCAAAACAAATATTACTTGCATTGCTCCCTTTTTTCAGCTGACGAC
GTGCACGGAGTGACAACTTTACCCAGGTTGGTCCAAATTCTCGCTAAGTA
TGTAAATGTGAAACCATCCATACGTAACACACAACATCATGTCAGCTCTC
AACTACAGTTGGCGCCCGCAGTTAAGAAACGCTTATTTCAGGTCCAGCCT
CGAATTCCTATTGTGGGCTATAAACTCAGCGTTTGTCGTTCAGTTTCTTA
TACCAAGTTTCTTATTTTTTCGTGCAGCCATATCCTGCTGAATTTCTTAA
ATCGGCAATTTCTTATTTCTCTGCTTGTTGCATACTACACAACGCTTCGC
AGCCTGTCTGGTGTGCTGTGCCAAAGCTTTAGCGCCAGCAGAGAACGTGG
CAGAGCCCGCAGGGTGCCGAAGGGGGCGCCGCCCTTGTCGTACAACTAGA
ATAATGCACTATTAGATTATATGGGAGGGGGGGGGTAGGGGGAGAGGGGG
AAAGAGCGAGAGAGCTGTCTGTGATGGGGTTTGTTTCTTATTCTTCACAC
TCCCCCCCCGTAAACCCTCGTTTCTTATGTAGTAGGACAGCGGTCGCCGC
TGTGTTTCTTATTGGGTGACGACCCAGATTCAGCTGTGTTTCTTAACCCT
CTTTTCTTAATTTTTGTGAAAAAGTGAGCCTCAATTTTCTGAACTAAATA
TTTCTTAACTGCGGGCGCCAACTGTATTTAAACTCATGTAAATCAATCCT
TCTGAAGACCAGTGTAATATCACGGCCTACCTTCTTTCCCGTCTTACTTG
CAGGTTGAGGTTTCTGCCGGACCTGCTGGAGATTTCCCGTCCTTGCAGTT
CGACTTCAAGCTCAAGAAAAATTCAAGAGAGTAGGCGGTCGGGCCTTGGT
GTGAGCCCATCGATCATCAAGTGCGATGAAGCTGTTGTTGGGCAGTTGTC
TGACCAGCTTTCATTATGCAAGGAAAAAATGCGTTGCAGAAGGAGTCAAG
CATGTATCACGCACTTAGAAATTACCAGGTAGAAGGAAATTGCCCTTGCG
GCAAGCGCATGGACTCAGCTCAGGGTTTCATGCATACTCACTCGTAGATA
GATATGAGTGGCCGCAGGGCGGAAAGGGGGAGAATAGAGAGCAAGGGTTG
GGTTCAATCTAAAACACTGCGGACTTCTGATCGATGCGTTGTCGGAAATA
TCGAGGGGCGGGGGATTGGCCTTGAAGGAGCAGGTGGCAATGAAGCGGGA
ACGGAGCAGTGGGTTGGAATGGGGATGCCTCAGAATGAGCAACATGGTGA
GCCTTTCTTTCTCGGTGTGGCCGCTAACGGGCAGTATTGAGCAGCAATGC
GGGACAGACGTTTGGGCGCTGAAATATGCGCGCGACATCATTAAACTCAA
CTTAACGTTTCGTGGTGGAAAGTGGATGTCTGGTCGATACGTGGTCGGGA
GTGCCGAGGCGCGAGAGGGGTCCATTCTTGTTTGAGTACGGTGGTTGGAT
TTCGTTGAGGGTGGAACATTTTCTTGAGCAGCAGCAAGTACGCACGCAGC
ATTCAATTACAGTACACTGCTTGAAATAATAATGAGCCAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig163:1924..5163+

>mRNA_E-fasciculatus_F_contig163.4278.1 ID=mRNA_E-fasciculatus_F_contig163.4278.1|Name=mRNA_E-fasciculatus_F_contig163.4278.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1092bp|location=Sequence derived from alignment at E-fasciculatus_F_contig163:1924..5163+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTGCCTTTCATCGTTCACGCTTCGGTGGCATTCGCTCTTCTTCTGAG
CTTTCCGACGGTGGAGGCTTCCGGGAAAAAACACAAAGAATCCATCGAAT
TCACCGTCTTCGAGAGGCAGAGCGATGACGGTCCTCGTCACAGCCCGCTC
TTTGCTCTCCCCGTGCCCGAGGTGGAAGATGTGGAGTATCCCTCCAAAAT
GGTGCTCTTCAACAATGACCTATACGGTTCTGAAGATGATCTGATCGACG
AGGATCAAGAGAAACTCATCGGGTACAACCAGATGGTGCCTTTCATCGTT
CACGCTTCGGTGGCATTCGCTCTTCTTCTGAGCTTTCCGACGGTGGAGGC
TTCCGGGAAAAAACACAAAGAATCCATCGAATTCACCGTCTTCGAGAGGC
AGAGCGATGACGGTCCTCGTCACAGCCCGCTCTTTGCTCTCCCCGTGCCC
GAGGTGGAAGATGTGGAGTATCCCTCCAAAATGGTGCTCTTCAACAATGA
CCTATACGGTTCTGAAGATGATCTGATCGACGAGGATCAAGAGAAACTCA
TCGGGTACAACCAGGGTCACTGTATGGAGACCGTGGCCTCCGGCGGTTTC
ATTGCCGAGTGCTTCTTCACGTACGTATTCGACGACGGCTCGCTCACCGC
GAACGGCCCGTTCAACTTCGATGTCGAAGATGGGGTTCTCCCCTCTTTTC
TGGCCGTCACTGGGGGCACCGGGGAGTACGATGGCACCCTGGGATGTGGT
CACTGTATGGAGACCGTGGCCTCCGGCGGTTTCATTGCCGAGTGCTTCTT
CACGTACGTATTCGACGACGGCTCGCTCACCGCGAACGGCCCGTTCAACT
TCGATGTCGAAGATGGGGTTCTCCCCTCTTTTCTGGCCGTCACTGGGGGC
ACCGGGGAGTACGATGGCACCCTGGGATGTGTTGAGGTTTCTGCCGGACC
TGCTGGAGATTTCCCGTCCTTGCAGTTCGACTTCAAGCTCAAGAAAAATT
CAAGAGAGTAGGTTGAGGTTTCTGCCGGACCTGCTGGAGATTTCCCGTCC
TTGCAGTTCGACTTCAAGCTCAAGAAAAATTCAAGAGAGTAG
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