mRNA_E-fasciculatus_F_contig16293.4277.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16293.4277.1
Unique NamemRNA_E-fasciculatus_F_contig16293.4277.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16293.4277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16293contigE-fasciculatus_F_contig16293:5..2390 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-07_002050.1
Exons2
Model size327
Cds size246
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16293.4277.1prot_E-fasciculatus_F_contig16293.4277.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16293 5..2309 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928099.3895285-CDS-E-fasciculatus_F_contig16293:4..2051622928099.3895285-CDS-E-fasciculatus_F_contig16293:4..205Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16293 5..205 -
1695995819.58921-CDS-E-fasciculatus_F_contig16293:4..2051695995819.58921-CDS-E-fasciculatus_F_contig16293:4..205Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16293 5..205 -
1622928099.4261642-CDS-E-fasciculatus_F_contig16293:2264..23091622928099.4261642-CDS-E-fasciculatus_F_contig16293:2264..2309Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16293 2265..2309 -
1695995819.6026673-CDS-E-fasciculatus_F_contig16293:2264..23091695995819.6026673-CDS-E-fasciculatus_F_contig16293:2264..2309Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16293 2265..2309 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928099.4499602-UTR-E-fasciculatus_F_contig16293:2309..23901622928099.4499602-UTR-E-fasciculatus_F_contig16293:2309..2390Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16293 2310..2390 -
1695995819.613599-UTR-E-fasciculatus_F_contig16293:2309..23901695995819.613599-UTR-E-fasciculatus_F_contig16293:2309..2390Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16293 2310..2390 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16293.4277.1

>prot_E-fasciculatus_F_contig16293.4277.1 ID=prot_E-fasciculatus_F_contig16293.4277.1|Name=mRNA_E-fasciculatus_F_contig16293.4277.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=82bp
MSAPHGGGAVPPDAPHAGGGVLTDAGAAPVPGNPPKLADKLADPLGTFSA
AAAAAAAATAAAATAASTAFHAAPPSSVGPAG
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mRNA from alignment at E-fasciculatus_F_contig16293:5..2390-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16293.4277.1 ID=mRNA_E-fasciculatus_F_contig16293.4277.1|Name=mRNA_E-fasciculatus_F_contig16293.4277.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2386bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16293:5..2390- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGAGAGCATCAGGAGACGGAAAGAGAGAGAGAGAGAGAGACGGAGCACCG
AGATCTTTGCGAGAAATAGACCAACGATAACATGTCGGCCCCGCATGGCG
GAGGCGCCGTCCCACCAGACGCACCGGTGAGCTAGCCCTGCTTGTGATCG
AAAGCTCCAAAAAGTTTGAGCCCTTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCGGGGCTATTGAAAGAAAAATGCCCGCCGCGTCCGGCATGTTT
TACCGTGCGCGGTGTGGCCTTGCTGCTGCTATGCATACGGGCTGCGTCGT
GTGAGTAACAAACAGCAGCCGTCATTTACGTCACCTCACGGCACACGCCC
CAATCCCAGGATTCAGCGGAGATGCCGCGCTTCTGTGATGAGGGCGAACG
TAGTCTCATCTAAAGGATTTTCACGTGGCAGTCAGCCCGGTCGACGCAAA
TCACCACCTTTTTCACCGGAGAAAAATCTTCGGCTGTTGATTGCCTCCCG
CCTAGCGCTCATGTGTTGCGGGTTTTGGCTCTTGTACAACAGCCTTGGTT
GCAAACATGACAACCCTGCTGTTGGTCTGCTGGTTGCCAAGGAACGCCGG
ATGGGTCTACCAGCAGTTAATGATTGCCTGATTATTCGTAGCCTGCATTA
GGTTCTTCAGACGTGTTCCCTTCACGGTGGAGACAACGGGACGTATGTAA
TACTCCGAAGGTGCTGTAATGTTGTACTCTGATTGCCGCTCATCGCAACT
AACTTGTTTCCCACCATTAACCTCTCCCAAATGGTCTATAGACTACGAGC
AGAGCCTGTACAATACCGCGAAACTAAATCTCTGCGGAGGACCGTAGAGC
CGGGTGCTTGATTTAAGCGGAAGGGCTAGAAATCTGCGCGCTGATGTCGG
CGCTTATCTATCACGACTTGACGCACGATGTCGCTATTCTGTCATCATGT
TGGCCCACCGCAATATGTGCGATAATCAACGCCAAGAGGTAAACACACAG
CGGTAGCCTTTAATGGACTGCGGTGTTTGTAGCGGCCATGAATTAAGAGT
TAAAAGCGCAGCAGCAGGGGTGCTAAACTGCTAACTGTAGGAGGTGGCGG
TGTAAGTACTGTCGAATGAATCCCCCGCCGGTAGAGAGCCCGACAGCAGT
AGTCTATGCCCATTAAAACCTTGTACAGTAGGCGTTTTTTTCCCGCTGGG
AGGCTTCGCGTCATGTCATTGGTCAGCTACTATTATTATAGCTGGTGTCC
ACGCTCAACGCCAACCACAGAAACACACGGCGTTTTCGCGTTTTCTCGCT
GAGAGGTGGGCGTAGATTCCGTTGGGTCATCTGATTACCAACCTGTGGTG
ATGCAAGTACACAGCAGTCCAGACTTCCAGACCGTCTCTTTGGGCGTACG
GATCCGATTGGGTTTTGGTATTGTATCACAGACAGCCCGGTGGAGCAGAA
TGGGCAGGGGATACATCCCTGACATGCAGGCGTTTGTCCTCGCCCGCATA
CAAAACGCCGGATATCTCTCGCCTGTGTGAGAGGTTTTGTTCAACGGGGG
AAAAGGCTAAACCCTTTGACACAACGCGACTCCCTTTCACGCCTTTGAAA
AACCGAACAGCGATGTACCGGAACAGCAGTAGTATGCCGAAGGCGTGTGG
TCCAAGCGCGGCCCTTCCCAGCTGAGTGTCCGACGCGAAAGCACGTCCCA
CGCTTTGTCTCAGGGTGTATAGCTGTATCTCTTTGTTGTCGTACAGTTTG
GTAATTCGCTGCGCATAGAGTCGGTTAGAACCGACAAAGGGGTACATTAC
AGGCAGGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTAGA
GTACAACAGCGCGTTCGCCAGCGTTTTCCGGAGCTTGTTGCACCAGGGCA
TGTATTATGAATTACACCCCACACAAATCATATATGATTGTCGTCGTCTG
TGACCTTTACACACCCCTCTGTAGGGGGAGGAGTCTTCTGGAAGAGAGCG
ACGCGTTTCTACTTCTCCTGTGGGTCCTCCGCAACCAGCCCCGCTGGCCG
CGCTCTCCCCGTGCGCAATACCAAATACTAAGAAGTAGCTTGATTCGGCT
AATCCCACGTTTTGATCGTCGACGCCCTTAAACGCGTCTGTCTGTCTGTC
TGTCTGTTTGTTTGTTTGTCTCTCCCCCCTCCCAGCACGCCGGAGGCGGT
GTTCTTACTGACGCAGGAGCCGCCCCCGTCCCCGGCAACCCGCCCAAGCT
AGCAGACAAGCTAGCAGACCCCCTCGGAACCTTCAGCGCCGCCGCAGCAG
CAGCAGCCGCCGCAACCGCTGCCGCCGCCACCGCCGCCTCTACCGCCTTC
CACGCCGCCCCACCGTCCTCCGTGGGCCCCGCGGGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16293:5..2390-

>mRNA_E-fasciculatus_F_contig16293.4277.1 ID=mRNA_E-fasciculatus_F_contig16293.4277.1|Name=mRNA_E-fasciculatus_F_contig16293.4277.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=492bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16293:5..2390- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCGGCCCCGCATGGCGGAGGCGCCGTCCCACCAGACGCACCGATGTC
GGCCCCGCATGGCGGAGGCGCCGTCCCACCAGACGCACCGCACGCCGGAG
GCGGTGTTCTTACTGACGCAGGAGCCGCCCCCGTCCCCGGCAACCCGCCC
AAGCTAGCAGACAAGCTAGCAGACCCCCTCGGAACCTTCAGCGCCGCCGC
AGCAGCAGCAGCCGCCGCAACCGCTGCCGCCGCCACCGCCGCCTCTACCG
CCTTCCACGCCGCCCCACCGTCCTCCGTGGGCCCCGCGGGGCACGCCGGA
GGCGGTGTTCTTACTGACGCAGGAGCCGCCCCCGTCCCCGGCAACCCGCC
CAAGCTAGCAGACAAGCTAGCAGACCCCCTCGGAACCTTCAGCGCCGCCG
CAGCAGCAGCAGCCGCCGCAACCGCTGCCGCCGCCACCGCCGCCTCTACC
GCCTTCCACGCCGCCCCACCGTCCTCCGTGGGCCCCGCGGGG
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