mRNA_E-fasciculatus_F_contig16291.4276.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16291.4276.1
Unique NamemRNA_E-fasciculatus_F_contig16291.4276.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16291.4276.1 vs. uniprot
Match: D8LMJ6_ECTSI (Suf domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMJ6_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 5.420e-27
Identity = 55/56 (98.21%), Postives = 55/56 (98.21%), Query Frame = 1 
Query:    4 QRNDEENLRVLFERVLHPSAMPAERARLVWERFVQLELCLSSTGGSLVKAQDVERR 171
            QRNDEENLRVLFERVLHPSAMPAERARLVWERFVQLELCLSSTGGSL KAQDVERR
Sbjct:  511 QRNDEENLRVLFERVLHPSAMPAERARLVWERFVQLELCLSSTGGSLAKAQDVERR 566
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BLAST of mRNA_E-fasciculatus_F_contig16291.4276.1 vs. uniprot
Match: A0A835YU98_9STRA (Suf domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU98_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 2.730e-14
Identity = 33/53 (62.26%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:   13 DEENLRVLFERVLHPSAMPAERARLVWERFVQLELCLSSTGGSLVKAQDVERR 171
            DE NLRVL ERVL P+A+P ERA LVW+RFV+LEL  ++TGG++ KA+ +E R
Sbjct:   30 DEANLRVLLERVLSPAALPPERAPLVWDRFVELELWRTATGGNMAKAEAIEER 82
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BLAST of mRNA_E-fasciculatus_F_contig16291.4276.1 vs. uniprot
Match: A0A662XZJ8_9STRA (Suf domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XZJ8_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 8.280e-7
Identity = 27/57 (47.37%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:    1 GQRNDEENLRVLFERVLHPSAMPAERARLVWERFVQLELCLSSTGGSLVKAQDVERR 171
            G  ND+ N+R LFE+VL  S MPAE +R +W+R+V+ E  + S+GG L     VE R
Sbjct:  549 GHLNDDNNMRSLFEKVL--SVMPAEVSRTIWDRYVEFEHTMVSSGGDLATVAKVEAR 603
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16291.4276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LMJ6_ECTSI5.420e-2798.21Suf domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835YU98_9STRA2.730e-1462.26Suf domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A662XZJ8_9STRA8.280e-747.37Suf domain-containing protein n=2 Tax=Nothophytoph... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16291contigE-fasciculatus_F_contig16291:2581..2751 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.1
Seed ortholog evalue8.7e-23
Seed eggNOG ortholog2880.D8LMJ6
KEGG koko:K14408
KEGG Pathwayko03015,map03015
EggNOG free text desc.mRNA processing
EggNOG OGsCOG0696@1,KOG1914@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928099.338508-CDS-E-fasciculatus_F_contig16291:2580..27511622928099.338508-CDS-E-fasciculatus_F_contig16291:2580..2751Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16291 2581..2751 -
1695995819.5730324-CDS-E-fasciculatus_F_contig16291:2580..27511695995819.5730324-CDS-E-fasciculatus_F_contig16291:2580..2751Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16291 2581..2751 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16291.4276.1prot_E-fasciculatus_F_contig16291.4276.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16291 2581..2751 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16291.4276.1

>prot_E-fasciculatus_F_contig16291.4276.1 ID=prot_E-fasciculatus_F_contig16291.4276.1|Name=mRNA_E-fasciculatus_F_contig16291.4276.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=57bp
GQRNDEENLRVLFERVLHPSAMPAERARLVWERFVQLELCLSSTGGSLVK
AQDVERR
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mRNA from alignment at E-fasciculatus_F_contig16291:2581..2751-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16291.4276.1 ID=mRNA_E-fasciculatus_F_contig16291.4276.1|Name=mRNA_E-fasciculatus_F_contig16291.4276.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=171bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16291:2581..2751- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGTCAGCGTAACGACGAGGAGAATCTTCGGGTGCTGTTCGAGCGAGTGCT
GCACCCGTCGGCTATGCCTGCGGAGAGAGCGAGGCTTGTGTGGGAGCGGT
TCGTGCAGCTAGAGCTGTGCTTGTCGAGCACTGGGGGGAGTCTGGTCAAG
GCTCAAGACGTCGAGAGACGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16291:2581..2751-

>mRNA_E-fasciculatus_F_contig16291.4276.1 ID=mRNA_E-fasciculatus_F_contig16291.4276.1|Name=mRNA_E-fasciculatus_F_contig16291.4276.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=342bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16291:2581..2751- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGTCAGCGTAACGACGAGGAGAATCTTCGGGTGCTGTTCGAGCGAGTGCT
GCACCCGTCGGCTATGCCTGCGGAGAGAGCGAGGCTTGTGTGGGAGCGGT
TCGTGCAGCTAGAGCTGTGCTTGTCGAGCACTGGGGGGAGTCTGGTCAAG
GCTCAAGACGTCGAGAGACGCGGTCAGCGTAACGACGAGGAGAATCTTCG
GGTGCTGTTCGAGCGAGTGCTGCACCCGTCGGCTATGCCTGCGGAGAGAG
CGAGGCTTGTGTGGGAGCGGTTCGTGCAGCTAGAGCTGTGCTTGTCGAGC
ACTGGGGGGAGTCTGGTCAAGGCTCAAGACGTCGAGAGACGC
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