mRNA_E-fasciculatus_F_contig16289.4273.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16289.4273.1
Unique NamemRNA_E-fasciculatus_F_contig16289.4273.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig16289.4273.1 vs. uniprot
Match: D7FK26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK26_ECTSI)

HSP 1 Score: 194 bits (492), Expect = 5.660e-60
Identity = 91/104 (87.50%), Postives = 98/104 (94.23%), Query Frame = 1
Query:    1 KVGFNAGHSSLNWLLYSRPSTKVLAFDLGEHEYMRHALDFLQVVFPGRLEVLIGDSSVSIPAYAVAEEAAGRDPHACNILFVDGDHSEDGAYADLVNFRALASR 312
            +VGFNAGHSSLNWLL+S PSTK+LAFDLGEHEYMRHALDFLQ +FPGRLEVLIGDSSV+IPAY VAE AAGR+P  CNILFVDGDHSEDGAYADLVNFRA+ASR
Sbjct:  184 EVGFNAGHSSLNWLLHSHPSTKILAFDLGEHEYMRHALDFLQAMFPGRLEVLIGDSSVTIPAYVVAEAAAGREPQGCNILFVDGDHSEDGAYADLVNFRAMASR 287          
BLAST of mRNA_E-fasciculatus_F_contig16289.4273.1 vs. uniprot
Match: D7FK45_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK45_ECTSI)

HSP 1 Score: 188 bits (477), Expect = 2.050e-54
Identity = 89/104 (85.58%), Postives = 98/104 (94.23%), Query Frame = 1
Query:    1 KVGFNAGHSSLNWLLYSRPSTKVLAFDLGEHEYMRHALDFLQVVFPGRLEVLIGDSSVSIPAYAVAEEAAGRDPHACNILFVDGDHSEDGAYADLVNFRALASR 312
            +VGFNAGHSSLNWLL SRPSTKVLAFDLGE+EYMRHALDFLQ+VFPGRLEVLIG S+V+IPAYAV EEAAGRD   CN+LFVDGDH+E+GAYADL+NFRALASR
Sbjct:  540 EVGFNAGHSSLNWLLNSRPSTKVLAFDLGEYEYMRHALDFLQMVFPGRLEVLIGHSTVTIPAYAVVEEAAGRDTRTCNVLFVDGDHTEEGAYADLINFRALASR 643          
BLAST of mRNA_E-fasciculatus_F_contig16289.4273.1 vs. uniprot
Match: A0A6H5JH46_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH46_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 4.550e-47
Identity = 82/104 (78.85%), Postives = 91/104 (87.50%), Query Frame = 1
Query:    1 KVGFNAGHSSLNWLLYSRPSTKVLAFDLGEHEYMRHALDFLQVVFPGRLEVLIGDSSVSIPAYAVAEEAAGRDPHACNILFVDGDHSEDGAYADLVNFRALASR 312
            KVGFNAGHSSLNWLL+S PSTK+LAFDLGEH+YM+HALD++QV        LIGDSSV+IPAY VAE+AAGR+P ACNILFVDGDHSE GAYADLVNFR LASR
Sbjct:  732 KVGFNAGHSSLNWLLHSHPSTKILAFDLGEHQYMKHALDYMQV--------LIGDSSVTIPAYVVAEDAAGREPQACNILFVDGDHSEGGAYADLVNFRVLASR 827          
BLAST of mRNA_E-fasciculatus_F_contig16289.4273.1 vs. uniprot
Match: D8LQ26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ26_ECTSI)

HSP 1 Score: 155 bits (393), Expect = 3.020e-42
Identity = 71/104 (68.27%), Postives = 87/104 (83.65%), Query Frame = 1
Query:    1 KVGFNAGHSSLNWLLYSRPSTKVLAFDLGEHEYMRHALDFLQVVFPGRLEVLIGDSSVSIPAYAVAEEAAGRDPHACNILFVDGDHSEDGAYADLVNFRALASR 312
            +VGFNAGHSSLNWLL S PST+VLAFDLG HEY+  A DFLQ VFPGRLE+++GDSS ++PA+  A+ AAGRDP  C+++FVDG+HSE+G YADLVNF A  +R
Sbjct:  582 EVGFNAGHSSLNWLLNSHPSTRVLAFDLGTHEYVGAARDFLQAVFPGRLELVLGDSSETVPAHTAADAAAGRDPRVCDLVFVDGNHSEEGTYADLVNFAAKTNR 685          
BLAST of mRNA_E-fasciculatus_F_contig16289.4273.1 vs. uniprot
Match: A0A6H5K0Q1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Q1_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 2.020e-38
Identity = 66/100 (66.00%), Postives = 82/100 (82.00%), Query Frame = 1
Query:   13 NAGHSSLNWLLYSRPSTKVLAFDLGEHEYMRHALDFLQVVFPGRLEVLIGDSSVSIPAYAVAEEAAGRDPHACNILFVDGDHSEDGAYADLVNFRALASR 312
            + GHSSLNWLL S PST+VLAFDLG H+Y+  A DFLQ VFPGRLE+++GDSS ++PA+  A+ AAGRDP  C+++FVDGDHSE+G YADLVNF A  +R
Sbjct:  681 DGGHSSLNWLLNSHPSTRVLAFDLGMHQYVGAARDFLQAVFPGRLELVLGDSSETVPAHTAADAAAGRDPRVCDLVFVDGDHSEEGTYADLVNFAAKTNR 780          
BLAST of mRNA_E-fasciculatus_F_contig16289.4273.1 vs. uniprot
Match: A0A8J2SDJ9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SDJ9_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.940e-19
Identity = 49/103 (47.57%), Postives = 63/103 (61.17%), Query Frame = 1
Query:    1 KVGFNAGHSSLNWLLYSRPSTKVLAFDLGEHEYMRHALDFLQVVFP-GRLEVLIGDSSVSIPAYAVAEEAAGRDPHACNILFVDGDHSEDGAYADLVNFRALA 306
            +VGFNAGHS+L WL+ + P  +V AFDLG H Y  H   F    F  GR++V  GDS  ++PA+A A  +    P  C+++FVDGDH    A ADL N RA A
Sbjct:  263 EVGFNAGHSTLLWLM-ADPRVRVRAFDLGIHWYSPHVTGFFDAAFDAGRVDVTFGDSQQTLPAFAAAFNST-EPPEFCDLIFVDGDHHYAAALADLRNLRAAA 363          
BLAST of mRNA_E-fasciculatus_F_contig16289.4273.1 vs. uniprot
Match: A0A7S2VQM3_9DINO (Hypothetical protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2VQM3_9DINO)

HSP 1 Score: 84.0 bits (206), Expect = 1.510e-17
Identity = 42/103 (40.78%), Postives = 62/103 (60.19%), Query Frame = 1
Query:    1 KVGFNAGHSSLNWLLYSRPSTKVLAFDLGEHEYMRHALDFLQVVFPGRLEVLIGDSSVSIPAYAVAEEAAGRDPHACNILFVDGDHSEDGAYADLVNFRALAS 309
            +VGFNAGHSS  +L  + P   + +FD+G+  Y R     ++ +FP R E ++G S  ++P +  A     R    C+++ VDGDHS +G +ADL NFR LAS
Sbjct:   61 EVGFNAGHSSAVFL-NANPEASLFSFDIGQFPYTRGNAKLMKELFPDRFEFILGPSEKAVPEFGQA-----RPDVKCDVISVDGDHSTEGTFADLANFRKLAS 157          
BLAST of mRNA_E-fasciculatus_F_contig16289.4273.1 vs. uniprot
Match: A0A7S4E5N2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E5N2_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 2.270e-17
Identity = 46/104 (44.23%), Postives = 61/104 (58.65%), Query Frame = 1
Query:    1 KVGFNAGHSSLNWLLYSRPSTKVLAFDLGEHEYMRHALDFLQVVFPGRLEVLIGDSSVSIPAYAVAEEAAGRDPHACNILFVDGDHSEDGAYADLVNFRALASR 312
            +VGFNAGHS+LNWL  + P T V AFDLG H     A  +L   +PGRL + +GDS  ++P    A+        AC+++F+DG H  D   ADL N   LA+R
Sbjct:   96 EVGFNAGHSALNWLA-ADPRTAVDAFDLGAHPSAAAAFAYLSKKYPGRLRLTLGDSRATLPLVDHAK--------ACDVVFIDGGHDGDVPAADLGNLAPLAAR 190          
BLAST of mRNA_E-fasciculatus_F_contig16289.4273.1 vs. uniprot
Match: A0A511MPT2_9NOCA (Uncharacterized protein n=1 Tax=Nocardia ninae NBRC 108245 TaxID=1210091 RepID=A0A511MPT2_9NOCA)

HSP 1 Score: 81.6 bits (200), Expect = 5.790e-17
Identity = 42/102 (41.18%), Postives = 67/102 (65.69%), Query Frame = 1
Query:    1 KVGFNAGHSSLNWLLYSRPSTKVLAFDLGEHEYMRHALDFLQVVFPGRLEVLIGDSSVSIPAYAVAEEAAGRDPHACNILFVDGDHSEDGAYADLVNFRALA 306
            ++GFNAG SS  +L  + P   V +FDLGEH+Y+  A D++  +FPGR  +++GDS+ ++P +     A+G+ P   +++F+DG HS + A ADL N + LA
Sbjct:   46 EIGFNAGFSSYTFL-EANPDVHVYSFDLGEHDYVHLAKDYIDGMFPGRHTLILGDSTQTVPEFC----ASGQVPR-FDLVFIDGGHSYEVAKADLHNMKGLA 141          
BLAST of mRNA_E-fasciculatus_F_contig16289.4273.1 vs. uniprot
Match: A0A7S2BCF4_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2BCF4_9DINO)

HSP 1 Score: 80.9 bits (198), Expect = 8.310e-17
Identity = 42/103 (40.78%), Postives = 61/103 (59.22%), Query Frame = 1
Query:    1 KVGFNAGHSSLNWLLYSRPSTKVLAFDLGEHEYMRHALDFLQVVFPGRLEVLIGDSSVSIPAYAVAEEAAGRDPHACNILFVDGDHSEDGAYADLVNFRALAS 309
            +VGFNAGHS+  +L  + P  KV +FD+G+  Y R     ++ +FP R E + G S  ++P +        R    C+I+ VDGDHS +G +ADL NFR LA+
Sbjct:    6 EVGFNAGHSAAVFL-NANPEAKVYSFDIGQFPYTRGNAQLMKELFPDRFEYISGPSEKTVPEFH-----RQRPDVKCDIISVDGDHSTEGTFADLANFRELAT 102          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16289.4273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FK26_ECTSI5.660e-6087.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FK45_ECTSI2.050e-5485.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JH46_9PHAE4.550e-4778.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQ26_ECTSI3.020e-4268.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K0Q1_9PHAE2.020e-3866.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8J2SDJ9_9STRA1.940e-1947.57Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2VQM3_9DINO1.510e-1740.78Hypothetical protein n=1 Tax=Brandtodinium nutricu... [more]
A0A7S4E5N2_9STRA2.270e-1744.23Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A511MPT2_9NOCA5.790e-1741.18Uncharacterized protein n=1 Tax=Nocardia ninae NBR... [more]
A0A7S2BCF4_9DINO8.310e-1740.78Hypothetical protein n=1 Tax=Alexandrium andersoni... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16289contigE-fasciculatus_F_contig16289:1969..2524 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score195.7
Seed ortholog evalue1.1e-47
Seed eggNOG ortholog2880.D7FK26
EggNOG free text desc.Methyltransferase domain
EggNOG OGs2E2B0@1,2S9J2@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size315
Cds size315
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928098.9116457-CDS-E-fasciculatus_F_contig16289:1968..21571622928098.9116457-CDS-E-fasciculatus_F_contig16289:1968..2157Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16289 1969..2157 -
1695995819.331691-CDS-E-fasciculatus_F_contig16289:1968..21571695995819.331691-CDS-E-fasciculatus_F_contig16289:1968..2157Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16289 1969..2157 -
1622928098.925716-CDS-E-fasciculatus_F_contig16289:2398..25241622928098.925716-CDS-E-fasciculatus_F_contig16289:2398..2524Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16289 2399..2524 -
1695995819.343021-CDS-E-fasciculatus_F_contig16289:2398..25241695995819.343021-CDS-E-fasciculatus_F_contig16289:2398..2524Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16289 2399..2524 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16289.4273.1prot_E-fasciculatus_F_contig16289.4273.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16289 1969..2524 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16289.4273.1

>prot_E-fasciculatus_F_contig16289.4273.1 ID=prot_E-fasciculatus_F_contig16289.4273.1|Name=mRNA_E-fasciculatus_F_contig16289.4273.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=105bp
KVGFNAGHSSLNWLLYSRPSTKVLAFDLGEHEYMRHALDFLQVVFPGRLE
VLIGDSSVSIPAYAVAEEAAGRDPHACNILFVDGDHSEDGAYADLVNFRA
LASR*
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mRNA from alignment at E-fasciculatus_F_contig16289:1969..2524-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16289.4273.1 ID=mRNA_E-fasciculatus_F_contig16289.4273.1|Name=mRNA_E-fasciculatus_F_contig16289.4273.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=556bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16289:1969..2524- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGGTGGGCTTTAACGCTGGGCACAGCTCTCTCAACTGGCTGCTTTACTC GCGCCCTTCGACGAAGGTCTTGGCCTTTGATCTGGGCGAACACGAATACA TGAGGCACGCCCTCGACTTCCTGCAGGTAAAACGTGGTATTGGTTTAGAA TAATTTTCTTTTACCGTACGCTGGCCTTTCTGTTTCAATTCGTGGAACCC GTGATATCCCGCTTTCTCTTTCTCCATCTCCCCAGCTCCCAGCCCGGTAA CCAACTCCTCTCCTCTGTGATAACCAGCGACGGGAACTAGCGGCAACTCA ATAGAACGAGTGCTTGTGTTTTCATCTTCACTCCCCCTTTATTTTCAACC TCTCGGAACCTATACAGGTGGTGTTTCCCGGTCGGCTTGAGGTACTTATC GGAGATTCTTCGGTATCCATCCCGGCGTATGCGGTTGCAGAGGAGGCAGC TGGCAGAGACCCTCACGCTTGCAACATCCTTTTCGTCGATGGCGATCACA GCGAAGACGGTGCCTACGCCGACCTTGTCAACTTCCGGGCGTTGGCTAGC AGGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16289:1969..2524-

>mRNA_E-fasciculatus_F_contig16289.4273.1 ID=mRNA_E-fasciculatus_F_contig16289.4273.1|Name=mRNA_E-fasciculatus_F_contig16289.4273.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=630bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16289:1969..2524- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGGTGGGCTTTAACGCTGGGCACAGCTCTCTCAACTGGCTGCTTTACTC
GCGCCCTTCGACGAAGGTCTTGGCCTTTGATCTGGGCGAACACGAATACA
TGAGGCACGCCCTCGACTTCCTGCAGAAGGTGGGCTTTAACGCTGGGCAC
AGCTCTCTCAACTGGCTGCTTTACTCGCGCCCTTCGACGAAGGTCTTGGC
CTTTGATCTGGGCGAACACGAATACATGAGGCACGCCCTCGACTTCCTGC
AGGTGGTGTTTCCCGGTCGGCTTGAGGTACTTATCGGAGATTCTTCGGTA
TCCATCCCGGCGTATGCGGTTGCAGAGGAGGCAGCTGGCAGAGACCCTCA
CGCTTGCAACATCCTTTTCGTCGATGGCGATCACAGCGAAGACGGTGCCT
ACGCCGACCTTGTCAACTTCCGGGCGTTGGCTAGCAGGTGAGTGGTGTTT
CCCGGTCGGCTTGAGGTACTTATCGGAGATTCTTCGGTATCCATCCCGGC
GTATGCGGTTGCAGAGGAGGCAGCTGGCAGAGACCCTCACGCTTGCAACA
TCCTTTTCGTCGATGGCGATCACAGCGAAGACGGTGCCTACGCCGACCTT
GTCAACTTCCGGGCGTTGGCTAGCAGGTGA
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