mRNA_E-fasciculatus_F_contig16284.4272.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16284.4272.1
Unique NamemRNA_E-fasciculatus_F_contig16284.4272.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig16284.4272.1 vs. uniprot
Match: D7G837_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G837_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 8.550e-24
Identity = 60/126 (47.62%), Postives = 66/126 (52.38%), Query Frame = 1
Query:  112 EKRDNLAKASAGFEEGGVPQAGSVDGPPRQGPPPSYEQMMTQPD--------------------------VDADXXXXXXXXXXXXXXXXXXXXXLGPVAKCRERSKSIWIHFPHVELLFILYAFQ 411
            +KRDNL +A AGFEE GV QA S DGPP Q PPPSYEQ+  +P                             AD                     LGPVAKCR+RSKS+WIHFPHVELLFILYAFQ
Sbjct:   23 QKRDNLREARAGFEESGVHQAASADGPPPQEPPPSYEQVAIEPGGQXXXXXXXXXXXXXXXXXXXXXXXXXXADNVNVGAEGTRSAGGEEAGDDGLGPVAKCRDRSKSLWIHFPHVELLFILYAFQ 148          
BLAST of mRNA_E-fasciculatus_F_contig16284.4272.1 vs. uniprot
Match: D8LN89_ECTSI (Liver stage antigen 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN89_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 1.960e-11
Identity = 47/139 (33.81%), Postives = 73/139 (52.52%), Query Frame = 1
Query:   13 FLGNLVLFLCLGFLILVVHLLLVSATEAWWL-QREKRDNLAKASAGFEEGGVPQ---AGSVDGPPRQGPPPSYEQ--MMTQPDVDADXXXXXXXXXXXXXXXXXXXXXLGPVAKCRERSKSIWIHFPHVELLFILYAFQ 411
            F+GNLVLFL + F+I ++H+ + S  EA+WL +R    ++A+A    +  GVP    +  +  P     P S  Q  + T      D                     L  +A+CRERS+S+W+HFPHVEL+++L+AF+
Sbjct: 2286 FVGNLVLFLIILFIIFLIHITVASGIEAYWLAKRGAEKHVARA----QRRGVPVRELSARLSNPWAPFDPNSESQRSLRTAKTSGDDEGEADDTDAEEGMPETVGRSKLSKIAECRERSQSVWLHFPHVELMYLLFAFE 2420          
BLAST of mRNA_E-fasciculatus_F_contig16284.4272.1 vs. uniprot
Match: A0A6H5KCW7_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCW7_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.620e-10
Identity = 29/31 (93.55%), Postives = 31/31 (100.00%), Query Frame = 1
Query:  319 LGPVAKCRERSKSIWIHFPHVELLFILYAFQ 411
            LGPVAKCR+RSKS+WIHFPHVELLFILYAFQ
Sbjct:  673 LGPVAKCRDRSKSLWIHFPHVELLFILYAFQ 703          
BLAST of mRNA_E-fasciculatus_F_contig16284.4272.1 vs. uniprot
Match: A0A6H5JTJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTJ3_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.070e-9
Identity = 43/135 (31.85%), Postives = 66/135 (48.89%), Query Frame = 1
Query:   13 FLGNLVLFLCLGFLILVVHLLLVSATEAWWLQREK-RDNLAKASAG-FEEGGVPQAGSVDGPPRQGPPPSYEQMMTQPDVDADXXXXXXXXXXXXXXXXXXXXXLGPVAKCRERSKSIWIHFPHVELLFILYAFQ 411
            F+GNL LF     +I  VH+LL SA EA+WL +++ R+ + +A  G     G   A S     R    P   +    P  D+                      +G V++CRE S+S W+H+PH+EL+F+ +AF+
Sbjct:  196 FMGNLALFAGFFVIIFSVHILLASAVEAYWLAKQRARNEIPRALGGDLSTSGSSTAWSGT---RAIQSPQLMEHQALPSWDSTGRNDSTNVQEAARTNTRAGSSIGQVSECRELSQSAWLHYPHLELVFLFFAFE 327          
BLAST of mRNA_E-fasciculatus_F_contig16284.4272.1 vs. uniprot
Match: D7G1L9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L9_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 3.380e-9
Identity = 48/149 (32.21%), Postives = 71/149 (47.65%), Query Frame = 1
Query:   13 FLGNLVLFLCLGFLILVVHLLLVSATEAWWLQREKR-DNLAKASAGFEEGGVPQAG--------------SVDGPPRQGPPPSYEQMMTQPDVDADXXXXXXXXXXXXXXXXXXXXXL-GPVAKCRERSKSIWIHFPHVELLFILYAFQ 411
            FLGN+ LF  L   I+V+H++LVSA EA+WL +E+  + L KA    +  G+P  G              +   P       S +  M++    AD                     L   +A CR RS S+W++FPH+ELLF+L+AF+
Sbjct:  132 FLGNIGLFTSLLLGIVVIHIVLVSAVEAYWLSKERAMEELTKA----QRRGIPIRGLGARRASRVAHSPDAESDPDELAASASNDGAMSREHAAADSVDVGVDFEEDGIPIRSRPKGLRAMLADCRYRSSSVWLYFPHIELLFLLFAFE 276          
BLAST of mRNA_E-fasciculatus_F_contig16284.4272.1 vs. uniprot
Match: A0A6H5J9C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9C2_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 4.850e-7
Identity = 42/148 (28.38%), Postives = 65/148 (43.92%), Query Frame = 1
Query:   13 FLGNLVLFLCLGFLILVVHLLLVSATEAWWLQREKRDNLAKASA--GFEEGGVPQA-------------GSVDGPPRQGPPPSYEQMMTQPDVDADXXXXXXXXXXXXXXXXXXXXXLGPVAKCRERSKSIWIHFPHVELLFILYAFQ 411
            F+GNL LF  L  +I   H+L+ S  EA+W+ +++   +   S   G     +P A             GS  G    G   S ++M  Q     D                     +G V+ CRE S+S W+H+PH+EL+F+ +AF+
Sbjct:  233 FMGNLALFSGLLVIIFTSHVLVASVVEAYWVAKQRARKVISRSLRRGLSLSEIPIALSGTWSQQPTMDDGSSAGSQSSGIMQSPQRMERQAVSPYDGGDSKSDEEEGGPRNTRPGNSIGQVSDCRELSQSPWLHYPHLELIFLFFAFE 380          
BLAST of mRNA_E-fasciculatus_F_contig16284.4272.1 vs. uniprot
Match: D7G5F3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5F3_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 5.940e-7
Identity = 47/152 (30.92%), Postives = 75/152 (49.34%), Query Frame = 1
Query:   13 FLGNLVLFLCLGFLILV--VHLLLVSATEAWWLQREK-RDNLAKASAGFEE---------GGVPQAGSVDGPPRQGPPPS----YEQMMTQPDV---DADXXXXXXXXXXXXXXXXXXXXXLGPVAKCRERSKSIWIHFPHVELLFILYAFQ 411
            F+GNL LF   GFL+ +  +H+L+ SA EA+WL +++ R+ + +A  G            G  PQ  ++D     G   S      Q+M    V   D+                      +G V++CRE S+S W+H+PH+EL+F+L+AF+
Sbjct:   64 FMGNLALFA--GFLLTIFSLHILVASAIEAYWLAKQRARNEVPRALRGDVSTSEFPTALLGTRPQQKNLDDGWSAGRQTSGTIQSPQLMEHQAVSSWDSTGGGDSTNEQKRGRTNTRAGSSIGQVSQCRELSQSAWLHYPHLELVFLLFAFE 213          
BLAST of mRNA_E-fasciculatus_F_contig16284.4272.1 vs. uniprot
Match: D7FWS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWS4_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 1.320e-6
Identity = 45/146 (30.82%), Postives = 63/146 (43.15%), Query Frame = 1
Query:   13 FLGNLVLFLCLGFLILVVHLLLVSATEAWWLQREK-RDNLAKASAGFEEGGVPQAGSVDGP------PRQGPPPSYEQMMTQPDV------DADXXXXXXXXXXXXXXXXXXXXXLGPVAKCRERSKSIWIHFPHVELLFILYAFQ 411
            F+GNL L + +   I  +H+  VS  EA WL +++ R+NL  A       G  QA    G       P    P  + +   QP        + +                     L PVA CRE S S W+HFPHVEL+F+ +AF+
Sbjct: 1264 FVGNLALVIGILLAIFFMHVAAVSGVEALWLTKKRARENLDAARRRGAPIGELQARLRGGRIICRTNPDLADPSPFARQAPQPSGTPSTLHEEESDMSDEEEGGRGLVPMRSENRLSPVATCREHSTSAWLHFPHVELVFLFFAFE 1409          
BLAST of mRNA_E-fasciculatus_F_contig16284.4272.1 vs. uniprot
Match: A0A6H5JD90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD90_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 1.340e-6
Identity = 47/147 (31.97%), Postives = 66/147 (44.90%), Query Frame = 1
Query:   13 FLGNLVLFLCLGFLILVVHLLLVSATEAWWLQREK-RDNLAKAS----------AGFEEGGV---PQAGSVDGPPRQGPPPSYEQMMTQPDVDADXXXXXXXXXXXXXXXXXXXXXLGPVAKCRERSKSIWIHFPHVELLFILYAFQ 411
            F+GNL L L +   I  +H+ +VS  EA WL +++ R+NL  A           A F  G +      G  D  P     PS  +  +Q   + +                     L PVA CRE S S W+HFPHVEL+F+ +AF+
Sbjct: 1493 FVGNLALVLGILLAIFFLHVAVVSGAEALWLTKKRARENLDGARRRNTPISELLARFRGGRIIRQTNPGLTDPSPFASRNPSLVRDGSQRTDEEEGGRELVPMCSENR--------LSPVAMCREHSTSAWLHFPHVELVFLFFAFE 1631          
BLAST of mRNA_E-fasciculatus_F_contig16284.4272.1 vs. uniprot
Match: D8LLG6_ECTSI (Mucin-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLG6_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 1.820e-6
Identity = 47/147 (31.97%), Postives = 66/147 (44.90%), Query Frame = 1
Query:   13 FLGNLVLFLCLGFLILVVHLLLVSATEAWWLQREK-RDNLAKAS----------AGFEEGGV---PQAGSVDGPPRQGPPPSYEQMMTQPDVDADXXXXXXXXXXXXXXXXXXXXXLGPVAKCRERSKSIWIHFPHVELLFILYAFQ 411
            F+GNL L L +   I  +H+ +VS  EA WL +++ R+NL  A           A F  G +      G  D  P     PS  +  +Q   + +                     L PVA CRE S S W+HFPHVEL+F+ +AF+
Sbjct: 1452 FVGNLALVLGILLAIFFLHVAVVSGAEALWLTKKRARENLDGARRRNTPISELLARFRGGRMIRRTNPGLTDPSPFGSRNPSLVRDRSQRTDEEEGGRGLVPMCSENQ--------LSPVATCREHSTSAWLHFPHVELVFLFFAFE 1590          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16284.4272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7G837_ECTSI8.550e-2447.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LN89_ECTSI1.960e-1133.81Liver stage antigen 3 n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5KCW7_9PHAE1.620e-1093.55VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JTJ3_9PHAE1.070e-931.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1L9_ECTSI3.380e-932.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J9C2_9PHAE4.850e-728.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5F3_ECTSI5.940e-730.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FWS4_ECTSI1.320e-630.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JD90_9PHAE1.340e-631.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLG6_ECTSI1.820e-631.97Mucin-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16284contigE-fasciculatus_F_contig16284:1309..2780 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size413
Cds size411
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928098.8611236-CDS-E-fasciculatus_F_contig16284:1308..14221622928098.8611236-CDS-E-fasciculatus_F_contig16284:1308..1422Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16284 1309..1422 +
1695995819.3127074-CDS-E-fasciculatus_F_contig16284:1308..14221695995819.3127074-CDS-E-fasciculatus_F_contig16284:1308..1422Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16284 1309..1422 +
1622928098.874163-CDS-E-fasciculatus_F_contig16284:2481..27781622928098.874163-CDS-E-fasciculatus_F_contig16284:2481..2778Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16284 2482..2778 +
1695995819.3219242-CDS-E-fasciculatus_F_contig16284:2481..27781695995819.3219242-CDS-E-fasciculatus_F_contig16284:2481..2778Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16284 2482..2778 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16284.4272.1prot_E-fasciculatus_F_contig16284.4272.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16284 1309..2778 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16284.4272.1

>prot_E-fasciculatus_F_contig16284.4272.1 ID=prot_E-fasciculatus_F_contig16284.4272.1|Name=mRNA_E-fasciculatus_F_contig16284.4272.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=137bp
DEEGFLGNLVLFLCLGFLILVVHLLLVSATEAWWLQREKRDNLAKASAGF
EEGGVPQAGSVDGPPRQGPPPSYEQMMTQPDVDADDVNVEEGGTRSAGRE
GAGDDGLGPVAKCRERSKSIWIHFPHVELLFILYAFQ
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mRNA from alignment at E-fasciculatus_F_contig16284:1309..2780+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16284.4272.1 ID=mRNA_E-fasciculatus_F_contig16284.4272.1|Name=mRNA_E-fasciculatus_F_contig16284.4272.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1472bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16284:1309..2780+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GACGAGGAAGGCTTCCTCGGGAACCTGGTGTTGTTTTTGTGCTTGGGCTT CCTAATCCTGGTGGTTCATCTGCTGCTCGTGTCCGCGACCGAGGCGTGGT GGCTACAGAGAGAGGTACGTTTTGGACCTTGTTGACGATGAGAGAGTCAA ATGCTCGGCTATTTTTTTCGTGTTTAAAAGTGAGACGGTTTTGTCAACTG CCGTGCTTCGATCGATCGATGTAGCTGGTGAAAAATTTGTCACGGTCACA CGTGGTGTAGCTCTTCCACCGAAATATTTCCTTTAGCATTGTTGTACATC AAGAACTAAATGTGAATCCGATGTCCTTGGACCGACAGGCTACTTTGTTT AAATTTGAGCGGTCCCGTCAACAATATCGGGAGGTTGCAATGTCGCCACA TCATACAGTAACCAGTGTGCATCATGCCGGCTCCTGGCCTTGTGGGCCTG GAGTTCTATCGAGATGGTGGTTGGGTTGAGTAGCTCGCTGAGTTGGCAGA CTCCCGTACAATCGAAAGATAGAACAACCAGTTGCAACTTTCACACGGGG GCCGCTCACTCACGCCTACCACATAAACCACCACAGGTTATCATGCCGGG TGCGTAAATGACGACTTCGAGTGCGCGAGATTCCTGCACACTAACGTAAA TGGTGTAAAAAGATGTAATATAAATATACTCGGGACGTTGAAGTGCTGTC GGTACGCGGCATATTTCACCGGAGCTCCACCGCTACATGTATGGCACAGG CGTTGGGTGTGTGTGAGCGTAATGGTTAAGAGGTGTGTCGTGATGGGCTG GCCGCGATCAACGCCTGCAAAGTCGTCTGGTAGTCTTGTTGAACCTGTCT TTCCAAGGTACCTGAGGCATTGGACTGCTTGTGATCGGGAAAATGGTGTG AGATACTAAGGGTTGGACGGTGTGTGTCGTTCAACAGGCACACACGGTCT GACGTCTTCGACGTCTTTGAGCACCACAAGTACGTAGAGCTCCTACAATC CAGCTTCAATTTTGCTGAGTATCGCCCGTTTTGAGTTGTGCTGGCACGAC GGGTGCACATAAAAAATGGGAAATAGAAACAGTTTCGTTTTTGTTCATAT GCATATGGTGTCATCTTCTAGGGCATCCTCGTTTAACCTAATAGGACCTT CTCACTTCCACGTCGGCTGCCAGAAACGCGACAACCTAGCGAAGGCAAGT GCTGGCTTTGAAGAAGGCGGCGTTCCGCAAGCCGGCTCGGTGGATGGGCC GCCCCGTCAAGGACCGCCTCCGAGCTACGAGCAGATGATGACGCAGCCGG ACGTTGATGCTGACGACGTCAACGTTGAGGAAGGAGGCACACGTTCTGCC GGGAGAGAAGGAGCTGGAGATGATGGACTGGGGCCGGTAGCCAAGTGCCG GGAGCGGTCTAAATCAATATGGATTCACTTCCCTCACGTTGAGCTGTTGT TCATCCTCTACGCGTTCCAGGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16284:1309..2780+

>mRNA_E-fasciculatus_F_contig16284.4272.1 ID=mRNA_E-fasciculatus_F_contig16284.4272.1|Name=mRNA_E-fasciculatus_F_contig16284.4272.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=822bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16284:1309..2780+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GACGAGGAAGGCTTCCTCGGGAACCTGGTGTTGTTTTTGTGCTTGGGCTT
CCTAATCCTGGTGGTTCATCTGCTGCTCGTGTCCGCGACCGAGGCGTGGT
GGCTACAGAGAGAGGACGAGGAAGGCTTCCTCGGGAACCTGGTGTTGTTT
TTGTGCTTGGGCTTCCTAATCCTGGTGGTTCATCTGCTGCTCGTGTCCGC
GACCGAGGCGTGGTGGCTACAGAGAGAGAAACGCGACAACCTAGCGAAGG
CAAGTGCTGGCTTTGAAGAAGGCGGCGTTCCGCAAGCCGGCTCGGTGGAT
GGGCCGCCCCGTCAAGGACCGCCTCCGAGCTACGAGCAGATGATGACGCA
GCCGGACGTTGATGCTGACGACGTCAACGTTGAGGAAGGAGGCACACGTT
CTGCCGGGAGAGAAGGAGCTGGAGATGATGGACTGGGGCCGGTAGCCAAG
TGCCGGGAGCGGTCTAAATCAATATGGATTCACTTCCCTCACGTTGAGCT
GTTGTTCATCCTCTACGCGTTCCAGAAACGCGACAACCTAGCGAAGGCAA
GTGCTGGCTTTGAAGAAGGCGGCGTTCCGCAAGCCGGCTCGGTGGATGGG
CCGCCCCGTCAAGGACCGCCTCCGAGCTACGAGCAGATGATGACGCAGCC
GGACGTTGATGCTGACGACGTCAACGTTGAGGAAGGAGGCACACGTTCTG
CCGGGAGAGAAGGAGCTGGAGATGATGGACTGGGGCCGGTAGCCAAGTGC
CGGGAGCGGTCTAAATCAATATGGATTCACTTCCCTCACGTTGAGCTGTT
GTTCATCCTCTACGCGTTCCAG
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