mRNA_E-fasciculatus_F_contig16280.4271.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16280.4271.1
Unique NamemRNA_E-fasciculatus_F_contig16280.4271.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16280.4271.1 vs. uniprot
Match: D7FP35_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP35_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 3.430e-36
Identity = 76/123 (61.79%), Postives = 89/123 (72.36%), Query Frame = 1 
Query:    1 RFPLRLVGGLFASIAMACLARLLGTITLRMASTGAAAAHAHLRRLVCGIVASSQQRPFARLQAELMSALPRLWGAVSHLNLRLGRLEENHRLGMNAHGAMCGVTRQLRGTVNMLMAAVPNVEA 369
            RFPL LVGG+F+ +AM  L RLL     RMA T AA AHA+L+R++ GIVAS  +RPFARLQAEL SA+PRLWGAVS +NLRLGR+EE HR  MNA GAMC    +L  TV  L   V N+EA
Sbjct:   59 RFPLLLVGGVFSVLAMVGLVRLLTFTARRMALTVAATAHAYLQRMISGIVASGLRRPFARLQAELTSAIPRLWGAVSTINLRLGRVEELHRCAMNARGAMCRERGRLAETVEWLTETVLNLEA 181
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BLAST of mRNA_E-fasciculatus_F_contig16280.4271.1 vs. uniprot
Match: A0A6H5J6H6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6H6_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 5.310e-27
Identity = 66/108 (61.11%), Postives = 74/108 (68.52%), Query Frame = 1 
Query:   46 MACLARLLGTITLRMASTGAAAAHAHLRRLVCGIVASSQQRPFARLQAELMSALPRLWGAVSHLNLRLGRLEENHRLGMNAHGAMCGVTRQLRGTVNMLMAAVPNVEA 369
            M  L RL      RMA   AA  HA+L+R V GIVAS+ +RPFARLQAEL SALPRLWGAVS+LN RLGR++E HR  MNA GAMC   RQL  TV  L   V N+EA
Sbjct:    1 MVGLVRLFAFTARRMALIVAATWHAYLQRKVSGIVASALRRPFARLQAELTSALPRLWGAVSNLNPRLGRVKELHRCAMNARGAMCRKARQLDETVEWLTETVLNLEA 108
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BLAST of mRNA_E-fasciculatus_F_contig16280.4271.1 vs. uniprot
Match: D7G290_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G290_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 1.130e-11
Identity = 36/60 (60.00%), Postives = 38/60 (63.33%), Query Frame = -1 
Query:  121 HCTVGVHTESVILLQPTQPQVQVRHGSPQPG*CGHELCLEPGEWPLLARGDDSTDQSAEV 300
            H   GV   SV L   TQPQVQVRHGSP P     ELCLEPGEWP LA G DS + S E+
Sbjct:  231 HGAAGVDGASVQLFHLTQPQVQVRHGSPPPRIGRRELCLEPGEWPSLAGGRDSRNHSLEI 290
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16280.4271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FP35_ECTSI3.430e-3661.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J6H6_9PHAE5.310e-2761.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G290_ECTSI1.130e-1160.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16280contigE-fasciculatus_F_contig16280:2375..2743 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-10_002330.1
Exons1
Model size369
Cds size369
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928098.812844-CDS-E-fasciculatus_F_contig16280:2374..27431622928098.812844-CDS-E-fasciculatus_F_contig16280:2374..2743Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16280 2375..2743 +
1695995819.304126-CDS-E-fasciculatus_F_contig16280:2374..27431695995819.304126-CDS-E-fasciculatus_F_contig16280:2374..2743Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16280 2375..2743 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16280.4271.1prot_E-fasciculatus_F_contig16280.4271.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16280 2375..2743 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16280.4271.1

>prot_E-fasciculatus_F_contig16280.4271.1 ID=prot_E-fasciculatus_F_contig16280.4271.1|Name=mRNA_E-fasciculatus_F_contig16280.4271.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=123bp
RFPLRLVGGLFASIAMACLARLLGTITLRMASTGAAAAHAHLRRLVCGIV
ASSQQRPFARLQAELMSALPRLWGAVSHLNLRLGRLEENHRLGMNAHGAM
CGVTRQLRGTVNMLMAAVPNVEA
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mRNA from alignment at E-fasciculatus_F_contig16280:2375..2743+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16280.4271.1 ID=mRNA_E-fasciculatus_F_contig16280.4271.1|Name=mRNA_E-fasciculatus_F_contig16280.4271.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=369bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16280:2375..2743+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGTTCCCACTGCGTCTCGTGGGAGGACTGTTCGCGTCCATCGCGATGGC
CTGCCTCGCCAGGCTGCTCGGGACCATCACCCTGCGCATGGCGTCGACCG
GGGCAGCCGCAGCGCACGCCCACCTCCGCAGATTGGTCTGTGGAATCGTC
GCCTCTAGCCAGCAAAGGCCATTCGCCAGGCTCCAGGCAGAGCTCATGTC
CGCACTACCCAGGCTGTGGGGAGCCGTGTCGCACTTGAACCTGCGGCTGG
GTCGGTTGGAGGAGAATCACAGACTCGGTATGAACGCCCACGGTGCAATG
TGTGGCGTGACAAGGCAGCTGCGTGGAACGGTGAATATGCTGATGGCAGC
AGTCCCGAATGTAGAGGCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16280:2375..2743+

>mRNA_E-fasciculatus_F_contig16280.4271.1 ID=mRNA_E-fasciculatus_F_contig16280.4271.1|Name=mRNA_E-fasciculatus_F_contig16280.4271.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=738bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16280:2375..2743+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGTTCCCACTGCGTCTCGTGGGAGGACTGTTCGCGTCCATCGCGATGGC
CTGCCTCGCCAGGCTGCTCGGGACCATCACCCTGCGCATGGCGTCGACCG
GGGCAGCCGCAGCGCACGCCCACCTCCGCAGATTGGTCTGTGGAATCGTC
GCCTCTAGCCAGCAAAGGCCATTCGCCAGGCTCCAGGCAGAGCTCATGTC
CGCACTACCCAGGCTGTGGGGAGCCGTGTCGCACTTGAACCTGCGGCTGG
GTCGGTTGGAGGAGAATCACAGACTCGGTATGAACGCCCACGGTGCAATG
TGTGGCGTGACAAGGCAGCTGCGTGGAACGGTGAATATGCTGATGGCAGC
AGTCCCGAATGTAGAGGCGAGGTTCCCACTGCGTCTCGTGGGAGGACTGT
TCGCGTCCATCGCGATGGCCTGCCTCGCCAGGCTGCTCGGGACCATCACC
CTGCGCATGGCGTCGACCGGGGCAGCCGCAGCGCACGCCCACCTCCGCAG
ATTGGTCTGTGGAATCGTCGCCTCTAGCCAGCAAAGGCCATTCGCCAGGC
TCCAGGCAGAGCTCATGTCCGCACTACCCAGGCTGTGGGGAGCCGTGTCG
CACTTGAACCTGCGGCTGGGTCGGTTGGAGGAGAATCACAGACTCGGTAT
GAACGCCCACGGTGCAATGTGTGGCGTGACAAGGCAGCTGCGTGGAACGG
TGAATATGCTGATGGCAGCAGTCCCGAATGTAGAGGCG
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