mRNA_E-fasciculatus_F_contig1627.4267.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1627.4267.1
Unique NamemRNA_E-fasciculatus_F_contig1627.4267.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1627.4267.1 vs. uniprot
Match: A0A6H5KWX1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWX1_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 7.340e-32
Identity = 75/86 (87.21%), Postives = 76/86 (88.37%), Query Frame = 1 
Query:    1 RGSVIFAVGFFFVFTGHPIIGLAIEVFGFLNLFGNMLPMVWAMASNMPFVKEIVGSGSSKGKKGRSGGNSSXXXXXXSRPAPSRDD 258
            RGSVIFAVGFFFVFTGHPIIGLAIEVFGFLNLFGNMLPMVWAMASNMPFVKEI+GSGSSKGK         XXXXXXSR APSRDD
Sbjct:  331 RGSVIFAVGFFFVFTGHPIIGLAIEVFGFLNLFGNMLPMVWAMASNMPFVKEIMGSGSSKGKXXXXXXX--XXXXXXSRAAPSRDD 414
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BLAST of mRNA_E-fasciculatus_F_contig1627.4267.1 vs. uniprot
Match: D7FQZ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQZ5_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 2.640e-31
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 1 
Query:    1 RGSVIFAVGFFFVFTGHPIIGLAIEVFGFLNLFGNMLPMVWAMASNMPFVKEIVGSGSSKGK 186
            RGSVIFAVGFFFVFTGHPIIGLAIEVFGFLNLFGNMLPMVWAMASNMPF+KEI+GSGSSKGK
Sbjct:  277 RGSVIFAVGFFFVFTGHPIIGLAIEVFGFLNLFGNMLPMVWAMASNMPFIKEIMGSGSSKGK 338
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BLAST of mRNA_E-fasciculatus_F_contig1627.4267.1 vs. uniprot
Match: A0A6V1NTD6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NTD6_HETAK)

HSP 1 Score: 80.9 bits (198), Expect = 7.350e-16
Identity = 38/63 (60.32%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:    1 RGSVIFAVGFFFVFTGHPIIGLAIEVFGFLNLFGNMLPMVWAMASNMPFVKEIVGSG--SSKG 183
            R +  FAVG FFV  G P+IG+  E+FGFLNLFGNM P+VW+M  NMPFV+++VG+   SSKG
Sbjct:  187 RATGTFAVGVFFVLIGKPVIGMIFEIFGFLNLFGNMFPLVWSMTKNMPFVRDLVGNSPRSSKG 249
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BLAST of mRNA_E-fasciculatus_F_contig1627.4267.1 vs. uniprot
Match: A0A835Z8R7_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8R7_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 2.410e-15
Identity = 35/54 (64.81%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:    1 RGSVIFAVGFFFVFTGHPIIGLAIEVFGFLNLFGNMLPMVWAMASNMPFVKEIV 162
            RG++IFA+GFF VFTGHPI+G+A EVFGFLNLFGNMLP++  MA  +P V +++
Sbjct:  588 RGTIIFALGFFLVFTGHPILGIAAEVFGFLNLFGNMLPLLTMMARQLPVVGDLI 641
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BLAST of mRNA_E-fasciculatus_F_contig1627.4267.1 vs. uniprot
Match: A0A7S2XZL7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZL7_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 6.340e-14
Identity = 30/55 (54.55%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:    1 RGSVIFAVGFFFVFTGHPIIGLAIEVFGFLNLFGNMLPMVWAMASNMPFVKEIVG 165
            RG V F +G   VF GHP++G+ +E FG LNLFGNM P+VW+M   MPF++++VG
Sbjct:  191 RGGVTFCLGVVLVFMGHPVLGMLLEFFGILNLFGNMFPIVWSMVKKMPFIRDLVG 245
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BLAST of mRNA_E-fasciculatus_F_contig1627.4267.1 vs. uniprot
Match: F0YIZ2_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIZ2_AURAN)

HSP 1 Score: 69.7 bits (169), Expect = 4.790e-13
Identity = 28/50 (56.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 RGSVIFAVGFFFVFTGHPIIGLAIEVFGFLNLFGNMLPMVWAMASNMPFV 150
            RGS+ FA GF  + +GHP++G+ +E+FGFLNLFGN+ P+  AM  N+PFV
Sbjct:   59 RGSLCFACGFMLILSGHPLLGIVVEIFGFLNLFGNLFPLFTAMFKNLPFV 108
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BLAST of mRNA_E-fasciculatus_F_contig1627.4267.1 vs. uniprot
Match: A0A7S1XYC5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XYC5_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.540e-12
Identity = 31/65 (47.69%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:    1 RGSVIFAVGFFFVFTGHPIIGLAIEVFGFLNLFGNMLPMVWAMASNMPFVKEIV-GSGSSKGKKG 192
            RG+ +F++GF  +  G P +G+ +E+FG +NLFGNM PMVWA+   MP VKE+   SG   G +G
Sbjct:  102 RGTTVFSLGFLLMLNGRPFVGMILELFGIINLFGNMFPMVWAVVQRMPIVKELFRDSGGKAGGRG 166
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BLAST of mRNA_E-fasciculatus_F_contig1627.4267.1 vs. uniprot
Match: A0A7S2G941_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G941_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.300e-11
Identity = 30/67 (44.78%), Postives = 42/67 (62.69%), Query Frame = 1 
Query:    1 RGSVIFAVGFFFVFTGHPIIGLAIEVFGFLNLFGNMLPMVWAMASNMPFVKEIVGSGSSKGKKGRSG 201
            RGS   A GFF +  G PI G+ +E+FG LNLFGNM P++W+M   +PFV  ++   S +  +  SG
Sbjct:  152 RGSATLAAGFFLILIGWPIFGMLVEIFGLLNLFGNMFPLLWSMLKRLPFVSALLSESSPQDDRQPSG 218
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BLAST of mRNA_E-fasciculatus_F_contig1627.4267.1 vs. uniprot
Match: A0A7S1UWW3_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UWW3_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 4.050e-11
Identity = 30/61 (49.18%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:    1 RGSVIFAVGFFFVFTGHPIIGLAIEVFGFLNLFGNMLPMVWAMASNMPFVKEIVGSGSSKG 183
            R +     G F VF G P+ G+A+EVFG LNLFGNM P++ A+   MPFVK + G G  +G
Sbjct:  152 RATACLCAGIFLVFIGWPVFGIALEVFGLLNLFGNMFPVLMAVLKQMPFVKSVFGGGRGRG 212
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BLAST of mRNA_E-fasciculatus_F_contig1627.4267.1 vs. uniprot
Match: A0A7S4NBY5_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NBY5_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.170e-10
Identity = 33/67 (49.25%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:    1 RGSVIFAVGFFFVFTGHPIIGLAIEVFGFLNLFGNMLPMVWAMASNMPFVKEIVGSGSSKGKKGRSG 201
            R +   A G F VF G P++G+A+EVFG LNLFGNM P+  A+A N+P +  ++G+G+  G K RSG
Sbjct:  336 RATGCLAAGMFLVFVGWPVVGIALEVFGLLNLFGNMFPVAMALARNVPVLGSLLGNGN--GGKSRSG 400
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1627.4267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWX1_9PHAE7.340e-3287.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQZ5_ECTSI2.640e-3196.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6V1NTD6_HETAK7.350e-1660.32Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835Z8R7_9STRA2.410e-1564.81Mitochondrial carrier domain-containing protein n=... [more]
A0A7S2XZL7_9STRA6.340e-1454.55Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
F0YIZ2_AURAN4.790e-1356.00Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S1XYC5_9STRA1.540e-1247.69Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S2G941_9STRA1.300e-1144.78Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1UWW3_9STRA4.050e-1149.18Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S4NBY5_9STRA1.170e-1049.25Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1627contigE-fasciculatus_F_contig1627:15857..17070 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.0
Seed ortholog evalue4.7e-26
Seed eggNOG ortholog2880.D7FQZ5
KEGG rclassRC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944
KEGG koko:K00799
KEGG TC1.A.12.2.2,1.A.12.3.2
KEGG ReactionR03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905
KEGG Pathwayko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418
EggNOG free text desc.vesicle-mediated transport
EggNOG OGsCOG0284@1,KOG1743@2759
EC2.5.1.18
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000
Hectar predicted targeting categorysignal peptide
Exons3
Model size363
Cds size363
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1627.4267.1prot_E-fasciculatus_F_contig1627.4267.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1627 15857..17070 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928097.8059983-CDS-E-fasciculatus_F_contig1627:15856..160521622928097.8059983-CDS-E-fasciculatus_F_contig1627:15856..16052Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1627 15857..16052 -
1695995819.0345762-CDS-E-fasciculatus_F_contig1627:15856..160521695995819.0345762-CDS-E-fasciculatus_F_contig1627:15856..16052Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1627 15857..16052 -
1622928097.81656-CDS-E-fasciculatus_F_contig1627:16327..163931622928097.81656-CDS-E-fasciculatus_F_contig1627:16327..16393Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1627 16328..16393 -
1695995819.0535755-CDS-E-fasciculatus_F_contig1627:16327..163931695995819.0535755-CDS-E-fasciculatus_F_contig1627:16327..16393Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1627 16328..16393 -
1622928098.3393703-CDS-E-fasciculatus_F_contig1627:16969..170701622928098.3393703-CDS-E-fasciculatus_F_contig1627:16969..17070Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1627 16970..17070 -
1695995819.0628707-CDS-E-fasciculatus_F_contig1627:16969..170701695995819.0628707-CDS-E-fasciculatus_F_contig1627:16969..17070Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1627 16970..17070 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1627.4267.1

>prot_E-fasciculatus_F_contig1627.4267.1 ID=prot_E-fasciculatus_F_contig1627.4267.1|Name=mRNA_E-fasciculatus_F_contig1627.4267.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=121bp
RGSVIFAVGFFFVFTGHPIIGLAIEVFGFLNLFGNMLPMVWAMASNMPFV
KEIVGSGSSKGKKGRSGGNSSSRQKRSSRPAPSRDDYDYDRRGGYGYDDD
DWDNGGGGGGGGGGWGGYGE*
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mRNA from alignment at E-fasciculatus_F_contig1627:15857..17070-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1627.4267.1 ID=mRNA_E-fasciculatus_F_contig1627.4267.1|Name=mRNA_E-fasciculatus_F_contig1627.4267.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1214bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1627:15857..17070- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGGGATCCGTCATTTTTGCCGTCGGTTTCTTCTTCGTTTTCACGGGGCA
CCCCATCATCGGCCTCGCCATCGAGGTCTTCGGGTTCCTGAACCTCTTCG
GGTGAGAAGGGAAAAAACAGAGAAGGAAAACAAAAAGAACATGAACAAGA
GGGATAAAGAGAGGAGGAATACAAACGAGAACGACCACAAAGAGAAAAAA
ACAAAAAGGCGAAAAAAGAAGAAATAATAAGGCCCTCGGTGCCTCGCCGC
TGCTGCATCGTGATGCCGCTGCACGGCCGGGTCTCAGATTGACCGCCCCC
TGTGGGTGTGTCGGCCGATTGCTTCCGGTGGGGTGTGTATCGATCCGTGC
CATGGAAGAAGACCACGCCTCTTGTGCGTCGTCTATGTTGCTGTCGAATG
TTTCGGGCTCCGAATGCTTGGGGCTCCTTGGCTTGTTTTCGAGTAGGACA
AATTGGCGAGCAAACACCAGCTCGTATTGTAGCATTTTTCGCCACCACTC
TGTTCCTGGTGGTTCAAGAGGAAATTGCGCGTCTTACCCTGGAGTTCATT
GGATGAGGTTCCGCTGCCTGATTGGGTATTTTCAAGCCTTCATTTTCTTG
ACGGTCGACTACCCCCCCCCCCCAACCCCCACCCCCTCTCCTTGCTCGTG
GATTTTTTTTTTTCGTGGCGTGTTCAGAAACATGTTGCCAATGGTCTGGG
CTATGGCGAGCAACATGCCCTTCGTAAAGGAAATCGTCGGCAGGTAAATT
TGATCCAACAACTGGTATTTTTTTTTTTCTTGACTGTAGTTGTGTGTGGT
CGTTGGTTGTGCATACTAAAGTCGCGAAAATCATGGAGGAAATAATTGCT
TGCGCGCCCAATCCGTCAGTTGTAAAATACGCACAAGGGACCCCAGCAGC
AGGCCGCCAGAACCGTGCAAAATCTTCACGTTCTTCCCCCTCCGGAAGGG
CTGAAACACTGTTCTCCGTGTGCCCGCCCGTTTCCTTTCGAAACGAATGC
AACGAATGCACCAATCAGCGGGTCCTCCAAGGGAAAGAAAGGACGGAGCG
GGGGCAACAGCAGCAGCAGACAGAAGCGATCCTCCCGCCCGGCGCCTTCT
CGCGACGACTACGACTACGACCGACGGGGCGGGTACGGCTACGATGACGA
CGACTGGGACAACGGAGGCGGAGGCGGCGGCGGCGGCGGCGGGTGGGGGG
GCTACGGAGAATAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1627:15857..17070-

>mRNA_E-fasciculatus_F_contig1627.4267.1 ID=mRNA_E-fasciculatus_F_contig1627.4267.1|Name=mRNA_E-fasciculatus_F_contig1627.4267.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=726bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1627:15857..17070- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGGGATCCGTCATTTTTGCCGTCGGTTTCTTCTTCGTTTTCACGGGGCA
CCCCATCATCGGCCTCGCCATCGAGGTCTTCGGGTTCCTGAACCTCTTCG
GAGGGGATCCGTCATTTTTGCCGTCGGTTTCTTCTTCGTTTTCACGGGGC
ACCCCATCATCGGCCTCGCCATCGAGGTCTTCGGGTTCCTGAACCTCTTC
GGAAACATGTTGCCAATGGTCTGGGCTATGGCGAGCAACATGCCCTTCGT
AAAGGAAATCGTCGGCAGAAACATGTTGCCAATGGTCTGGGCTATGGCGA
GCAACATGCCCTTCGTAAAGGAAATCGTCGGCAGCGGGTCCTCCAAGGGA
AAGAAAGGACGGAGCGGGGGCAACAGCAGCAGCAGACAGAAGCGATCCTC
CCGCCCGGCGCCTTCTCGCGACGACTACGACTACGACCGACGGGGCGGGT
ACGGCTACGATGACGACGACTGGGACAACGGAGGCGGAGGCGGCGGCGGC
GGCGGCGGGTGGGGGGGCTACGGAGAATAACGGGTCCTCCAAGGGAAAGA
AAGGACGGAGCGGGGGCAACAGCAGCAGCAGACAGAAGCGATCCTCCCGC
CCGGCGCCTTCTCGCGACGACTACGACTACGACCGACGGGGCGGGTACGG
CTACGATGACGACGACTGGGACAACGGAGGCGGAGGCGGCGGCGGCGGCG
GCGGGTGGGGGGGCTACGGAGAATAA
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