mRNA_E-fasciculatus_F_contig16264.4265.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16264.4265.1
Unique NamemRNA_E-fasciculatus_F_contig16264.4265.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16264.4265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16264contigE-fasciculatus_F_contig16264:1328..1937 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size536
Cds size429
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16264.4265.1prot_E-fasciculatus_F_contig16264.4265.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16264 1435..1937 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928097.0974178-UTR-E-fasciculatus_F_contig16264:1327..14341622928097.0974178-UTR-E-fasciculatus_F_contig16264:1327..1434Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16264 1328..1434 +
1695995818.9835978-UTR-E-fasciculatus_F_contig16264:1327..14341695995818.9835978-UTR-E-fasciculatus_F_contig16264:1327..1434Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16264 1328..1434 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928097.3912082-CDS-E-fasciculatus_F_contig16264:1434..16851622928097.3912082-CDS-E-fasciculatus_F_contig16264:1434..1685Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16264 1435..1685 +
1695995818.9916832-CDS-E-fasciculatus_F_contig16264:1434..16851695995818.9916832-CDS-E-fasciculatus_F_contig16264:1434..1685Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16264 1435..1685 +
1622928097.6245947-CDS-E-fasciculatus_F_contig16264:1759..19371622928097.6245947-CDS-E-fasciculatus_F_contig16264:1759..1937Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16264 1760..1937 +
1695995819.0009751-CDS-E-fasciculatus_F_contig16264:1759..19371695995819.0009751-CDS-E-fasciculatus_F_contig16264:1759..1937Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16264 1760..1937 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16264.4265.1

>prot_E-fasciculatus_F_contig16264.4265.1 ID=prot_E-fasciculatus_F_contig16264.4265.1|Name=mRNA_E-fasciculatus_F_contig16264.4265.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=143bp
MGFEASCWRPAALDDDEAAGGRFSSGTGRWCLRPFKRPSGRELSNCRFLE
GGLASNCSFRAGERPAGFLPLGSLPRSCLRAMGFAAALAACTTGAIFVGS
FRGGGRCGNIITPRVVCRGFLPTLWRQEPVHLPHCQCASVARR
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mRNA from alignment at E-fasciculatus_F_contig16264:1328..1937+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16264.4265.1 ID=mRNA_E-fasciculatus_F_contig16264.4265.1|Name=mRNA_E-fasciculatus_F_contig16264.4265.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=610bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16264:1328..1937+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCGATCTTGACGGCCGCTAGGCACGTCGTACCACCCCGCCCGCTCGGCG
GCGGCGGCGGCAGCGGCGGCGAGACGCCGTTTCGACGTGATCTTCTCCGT
AACCGTCATGGGCTTCGAGGCGAGCTGCTGGCGCCCCGCTGCGCTTGACG
ATGACGAGGCGGCAGGAGGCCGGTTTTCATCCGGAACGGGCCGGTGGTGC
CTTCGTCCGTTCAAACGACCCTCCGGCAGGGAATTGTCCAACTGCCGTTT
CTTGGAGGGCGGCCTCGCCAGCAACTGCTCCTTCAGGGCCGGAGAAAGGC
CGGCAGGTTTCCTGCCGCTCGGCTCCTTGCCGCGCAGCTGCTTGAGGGCC
ATGGGCTTGTACTTCTTTGCTGCGGGCTGGGACCCTGGTTCTCTTGCCCG
TCCTCCTGCCGTTGCTCCTTGTCTACTAATAGTGCTGCCGCTCTCGCGGC
GTGCACAACGGGAGCTATTTTCGTTGGAAGCTTCCGCGGCGGTGGACGTT
GCGGCAACATCATCACGCCTCGCGTTGTCTGCCGAGGTTTTCTTCCCACC
CTTTGGCGTCAGGAACCTGTCCATCTCCCGCACTGCCAGTGTGCTAGCGT
CGCACGCCGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16264:1328..1937+

>mRNA_E-fasciculatus_F_contig16264.4265.1 ID=mRNA_E-fasciculatus_F_contig16264.4265.1|Name=mRNA_E-fasciculatus_F_contig16264.4265.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=858bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16264:1328..1937+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGCTTCGAGGCGAGCTGCTGGCGCCCCGCTGCGCTTGACGATGACGA
GGCGGCAGGAGGCCGGTTTTCATCCGGAACGGGCCGGTGGTGCCTTCGTC
CGTTCAAACGACCCTCCGGCAGGGAATTGTCCAACTGCCGTTTCTTGGAG
GGCGGCCTCGCCAGCAACTGCTCCTTCAGGGCCGGAGAAAGGCCGGCAGG
TTTCCTGCCGCTCGGCTCCTTGCCGCGCAGCTGCTTGAGGGCCATGGGCT
TATGGGCTTCGAGGCGAGCTGCTGGCGCCCCGCTGCGCTTGACGATGACG
AGGCGGCAGGAGGCCGGTTTTCATCCGGAACGGGCCGGTGGTGCCTTCGT
CCGTTCAAACGACCCTCCGGCAGGGAATTGTCCAACTGCCGTTTCTTGGA
GGGCGGCCTCGCCAGCAACTGCTCCTTCAGGGCCGGAGAAAGGCCGGCAG
GTTTCCTGCCGCTCGGCTCCTTGCCGCGCAGCTGCTTGAGGGCCATGGGC
TTTGCTGCCGCTCTCGCGGCGTGCACAACGGGAGCTATTTTCGTTGGAAG
CTTCCGCGGCGGTGGACGTTGCGGCAACATCATCACGCCTCGCGTTGTCT
GCCGAGGTTTTCTTCCCACCCTTTGGCGTCAGGAACCTGTCCATCTCCCG
CACTGCCAGTGTGCTAGCGTCGCACGCCGTTGCTGCCGCTCTCGCGGCGT
GCACAACGGGAGCTATTTTCGTTGGAAGCTTCCGCGGCGGTGGACGTTGC
GGCAACATCATCACGCCTCGCGTTGTCTGCCGAGGTTTTCTTCCCACCCT
TTGGCGTCAGGAACCTGTCCATCTCCCGCACTGCCAGTGTGCTAGCGTCG
CACGCCGT
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