mRNA_E-fasciculatus_F_contig16261.4263.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig16261.4263.1 vs. uniprot
Match: D8LDH7_ECTSI (YihA6, YihA/EngB-like GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDH7_ECTSI) HSP 1 Score: 266 bits (681), Expect = 1.230e-85 Identity = 130/135 (96.30%), Postives = 130/135 (96.30%), Query Frame = 1
Query: 31 PKAPRGRAGDPQDDQVSLGKVGRNPFKKEKIVSKFGANDIRKVEFVGSYDDKEEIWPRTNLPEIAFLGRSNVGKSSMLNTLFGEPVAKVSKTPGRTRKINIFKAKNGNDKDVCYFADLPGYGYAKMSKDKQRTIE 435
PKAPRGR GDPQDDQ GK GRNPFKKEKIVSKFGANDIRKVEFVGSYDDKEEIWPRTNLPEIAFLGRSNVGKSSMLNTLFGEPVAKVSKTPGRTRKINIFKAKNGNDKDVCYFADLPGYGYAKMSKDKQRTIE
Sbjct: 222 PKAPRGRVGDPQDDQDGPGKAGRNPFKKEKIVSKFGANDIRKVEFVGSYDDKEEIWPRTNLPEIAFLGRSNVGKSSMLNTLFGEPVAKVSKTPGRTRKINIFKAKNGNDKDVCYFADLPGYGYAKMSKDKQRTIE 356
BLAST of mRNA_E-fasciculatus_F_contig16261.4263.1 vs. uniprot
Match: A0A836CAC1_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAC1_9STRA) HSP 1 Score: 125 bits (313), Expect = 3.090e-33 Identity = 62/99 (62.63%), Postives = 74/99 (74.75%), Query Frame = 1
Query: 157 VEFVGSYDDKEEIWPRTNLPEIAFLGRSNVGKSSMLNTLFGEPVAKV----SKTPGRTRKINIFKAKNG--NDKDVCYFADLPGYGYAKMSKDKQRTIE 435
VEF+GSY + E WP +PE+AFLGRSNVGKSSMLN LFGE AKV SKTPGRT+ INIF A+ G +++C FADLPGYGYAK++K+ R IE
Sbjct: 1 VEFIGSYAEDENAWPSEAVPEVAFLGRSNVGKSSMLNCLFGERAAKVRFVVSKTPGRTQLINIFSARGGAGGARELCRFADLPGYGYAKLAKEDMRAIE 99
BLAST of mRNA_E-fasciculatus_F_contig16261.4263.1 vs. uniprot
Match: A0A6H5JN91_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN91_9PHAE) HSP 1 Score: 112 bits (279), Expect = 3.420e-28 Identity = 53/62 (85.48%), Postives = 55/62 (88.71%), Query Frame = 1
Query: 31 PKAPRGRAGDPQDDQVSLGKVGRNPFKKEKIVSKFGANDIRKVEFVGSYDDKEEIWPRTNLP 216
PKAPRGR GDPQDDQ GK GRNPFKKEKIVSKFGANDIRKVEFVGSYDD+EEIWPR +P
Sbjct: 130 PKAPRGRVGDPQDDQDGPGKAGRNPFKKEKIVSKFGANDIRKVEFVGSYDDQEEIWPRVRVP 191
BLAST of mRNA_E-fasciculatus_F_contig16261.4263.1 vs. uniprot
Match: A0A7R9YE62_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YE62_9STRA) HSP 1 Score: 109 bits (272), Expect = 1.710e-27 Identity = 56/102 (54.90%), Postives = 72/102 (70.59%), Query Frame = 1
Query: 133 FGANDIRKVEFVGSYDDKEEIWPRTNLPEIAFLGRSNVGKSSMLNTLFG--EPVAKVSKTPGRTRKINIFKAKNGNDKDVCYFADLPGYGYAKMSKDKQRTI 432
F ++ + V F+G + P T +PE+AF+GRSNVGKSS LN L G + VA VSKTPGRTR+IN+F+ N K +C FADLPGYGYAK++K +QRTI
Sbjct: 44 FSLDERKDVSFLGGFATD---LPSTEVPEVAFIGRSNVGKSSFLNALEGGNKAVAIVSKTPGRTRQINLFQVANKAGKPLCVFADLPGYGYAKLAKGRQRTI 142
BLAST of mRNA_E-fasciculatus_F_contig16261.4263.1 vs. uniprot
Match: A0A7S0QGH8_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QGH8_9CRYP) HSP 1 Score: 102 bits (253), Expect = 1.230e-24 Identity = 50/89 (56.18%), Postives = 66/89 (74.16%), Query Frame = 1
Query: 157 VEFVGSYDDKEEIWPRTNLPEIAFLGRSNVGKSSMLNTLFGEPVAKVSKTPGRTRKINIFKAKNGNDKDVCYFADLPGYGYAKMSKDKQ 423
V+F+GS+D P T LPE+AF+GRSNVGKSS+LN+L G+ +A SKTPGRT++INIF K+ + V ADLPG+GYA++SK Q
Sbjct: 85 VKFLGSFDASP---PSTKLPEVAFVGRSNVGKSSLLNSLTGQKIAVTSKTPGRTQRINIFAVKDDKNSKVFCIADLPGWGYARVSKGGQ 170
BLAST of mRNA_E-fasciculatus_F_contig16261.4263.1 vs. uniprot
Match: A0A482SYH7_9ARCH (Ribosome biogenesis GTP-binding protein YsxC (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SYH7_9ARCH) HSP 1 Score: 101 bits (251), Expect = 1.490e-23 Identity = 51/102 (50.00%), Postives = 74/102 (72.55%), Query Frame = 1
Query: 133 FGANDIRKVEFVGSYDDKEEIWPRTNLPEIAFLGRSNVGKSSMLNTLFG--EPVAKVSKTPGRTRKINIFKAKNGNDKDVCYFADLPGYGYAKMSKDKQRTI 432
F + ++ EF+GSY + ++I P +PE+AF+GRSNVGKSS+LN + G + +A SK PGRT+ IN+FK K+ + D+C F DLPGYG+AK+ K++QR I
Sbjct: 104 FKLDSKKEFEFIGSYTNADQI-PIYPIPEVAFVGRSNVGKSSLLNCISGASKNIAVESKIPGRTQCINLFKCKDMSG-DICIFTDLPGYGFAKLGKEQQRDI 203
BLAST of mRNA_E-fasciculatus_F_contig16261.4263.1 vs. uniprot
Match: A0A7Y2HA27_9BACT (Probable GTP-binding protein EngB n=1 Tax=Saprospiraceae bacterium TaxID=2202734 RepID=A0A7Y2HA27_9BACT) HSP 1 Score: 98.6 bits (244), Expect = 5.400e-23 Identity = 48/93 (51.61%), Postives = 68/93 (73.12%), Query Frame = 1
Query: 148 IRKVEFVGSYDDKEEIWPRTNLPEIAFLGRSNVGKSSMLNTLFG-EPVAKVSKTPGRTRKINIFKAKNGNDKDVCYFADLPGYGYAKMSKDKQ 423
I++VEF+GS++ + + P+TNLPE AF+GRSNVGKSS++N L G + +A++S TPG+T+ +N F N Y DLPGYGYAK+SK K+
Sbjct: 3 IKEVEFIGSFEHESQC-PKTNLPEYAFIGRSNVGKSSLINALTGRKDIARISSTPGKTQTLNYFLVNNS-----WYLVDLPGYGYAKISKTKR 89
BLAST of mRNA_E-fasciculatus_F_contig16261.4263.1 vs. uniprot
Match: A0A2N9LXU7_9BACT (Probable GTP-binding protein EngB n=1 Tax=Candidatus Sulfotelmatomonas gaucii TaxID=2043161 RepID=A0A2N9LXU7_9BACT) HSP 1 Score: 98.6 bits (244), Expect = 5.400e-23 Identity = 47/78 (60.26%), Postives = 55/78 (70.51%), Query Frame = 1
Query: 196 WPRTNLPEIAFLGRSNVGKSSMLNTLFGEPVAKVSKTPGRTRKINIFKAKNGNDKDVCYFADLPGYGYAKMSKDKQRT 429
+P+ +PE+AFLGRSNVGKSS+LN L GE AKVS TPGRTR IN F + + FADLPGYGYAK+SK T
Sbjct: 18 FPKPGVPEVAFLGRSNVGKSSLLNALVGEKAAKVSSTPGRTRAINFFAIADQRQRHQLIFADLPGYGYAKLSKSISAT 95
BLAST of mRNA_E-fasciculatus_F_contig16261.4263.1 vs. uniprot
Match: A0A2V7JST9_9BACT (Probable GTP-binding protein EngB n=2 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A2V7JST9_9BACT) HSP 1 Score: 98.6 bits (244), Expect = 5.800e-23 Identity = 51/93 (54.84%), Postives = 65/93 (69.89%), Query Frame = 1
Query: 148 IRKVEFVGSYDDKEEIWPRTNLPEIAFLGRSNVGKSSMLNTLFG-EPVAKVSKTPGRTRKINIFKAKNGNDKDVCYFADLPGYGYAKMSKDKQ 423
IR VEF+G +K P + LPEIAF GRSNVGKSS+LNTL + A+VS+TPGRTR+IN F+ NG DLPGYGYA++SK+++
Sbjct: 3 IRNVEFIGGMAEKHGWRPESTLPEIAFAGRSNVGKSSLLNTLVRRKSFARVSRTPGRTREINFFRVNNG-----FVLVDLPGYGYARVSKERR 90
BLAST of mRNA_E-fasciculatus_F_contig16261.4263.1 vs. uniprot
Match: A0A3D4YLB2_9BACT (Probable GTP-binding protein EngB n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A3D4YLB2_9BACT) HSP 1 Score: 97.8 bits (242), Expect = 1.490e-22 Identity = 50/93 (53.76%), Postives = 66/93 (70.97%), Query Frame = 1
Query: 148 IRKVEFVGSYDDKEEIWPRTNLPEIAFLGRSNVGKSSMLNTLFG-EPVAKVSKTPGRTRKINIFKAKNGNDKDVCYFADLPGYGYAKMSKDKQ 423
IR VEF+G ++ P ++LPE+AF GRSNVGKSS+LNTL + A+VS+TPGRTR+IN F+ +G DLPGYGYA++SKDK+
Sbjct: 12 IRNVEFIGGMAERHGWRPESSLPEVAFAGRSNVGKSSLLNTLVRRKSFARVSRTPGRTREINFFRINDG-----FVLVDLPGYGYARVSKDKK 99 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16261.4263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig16261.4263.1 >prot_E-fasciculatus_F_contig16261.4263.1 ID=prot_E-fasciculatus_F_contig16261.4263.1|Name=mRNA_E-fasciculatus_F_contig16261.4263.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=145bp ERARKRAERKPKAPRGRAGDPQDDQVSLGKVGRNPFKKEKIVSKFGANDIback to top mRNA from alignment at E-fasciculatus_F_contig16261:615..2761+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig16261.4263.1 ID=mRNA_E-fasciculatus_F_contig16261.4263.1|Name=mRNA_E-fasciculatus_F_contig16261.4263.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2147bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16261:615..2761+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16261:615..2761+ >mRNA_E-fasciculatus_F_contig16261.4263.1 ID=mRNA_E-fasciculatus_F_contig16261.4263.1|Name=mRNA_E-fasciculatus_F_contig16261.4263.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=870bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16261:615..2761+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |